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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 247 1az9 ) ( 247 1az9 ) 1.0000 1.0000 0.0000 ( 0 71 91) 0 1.0000 1.0000 14 14
( 247 1az9 ) ( 345 1bco ) 0.2857 0.3636 4.7882 ( 0 3 6) 0 0.4996 0.6349 14 11
( 247 1az9 ) ( 463 1bu6_O) 0.5000 0.3889 3.5961 ( 0 10 21) 0 0.5000 0.3889 14 18
( 247 1az9 ) ( 464 1bu6_O) 0.6408 0.5286 7.5310 ( 1 25 36) 0 0.6408 0.5286 14 17
( 247 1az9 ) ( 471 1bup_A) 0.3571 0.3125 6.8995 ( 0 7 10) 0 0.4267 0.3741 14 16
( 247 1az9 ) ( 472 1bup_A) 0.4963 0.5754 4.5746 ( 1 12 21) 0 0.4963 0.5754 14 12
( 247 1az9 ) ( 592 1chm_A) 0.8570 0.9996 3.1969 ( 0 50 66) 0 0.8570 0.9996 14 12
( 247 1az9 ) ( 703 1cxq_A) 0.4285 0.5999 4.4883 ( 0 9 15) 0 0.4285 0.5999 14 10
( 247 1az9 ) ( 713 1cza_N) 0.2857 0.4000 4.1838 ( 0 5 6) 0 0.3513 0.4718 14 10
( 247 1az9 ) ( 714 1cza_N) 0.3158 0.3158 7.3993 ( 1 4 10) 0 0.3158 0.3158 14 14
( 247 1az9 ) ( 934 1dt9_A) 0.3571 0.5555 4.7296 ( 0 6 10) 0 0.5711 0.8864 14 9
( 247 1az9 ) ( 1021 1e3m_A) 0.4886 0.6956 5.6383 ( 1 9 21) 0 0.6405 0.9793 14 9
( 247 1az9 ) ( 1033 1e4f_T) 0.2857 0.2857 5.5640 ( 0 4 6) 0 0.5452 0.5452 14 14
( 247 1az9 ) ( 1034 1e4f_T) 0.4999 0.5383 5.3501 ( 0 11 21) 0 0.5501 0.5854 14 13
( 247 1az9 ) ( 1191 1eke_A) 0.3571 0.3571 5.7096 ( 0 6 10) 0 0.4788 0.4788 14 14
( 247 1az9 ) ( 1223 1eo1_A) 0.3571 0.6246 5.6818 ( 0 7 10) 0 0.5713 0.9980 14 8
( 247 1az9 ) ( 1289 1ewq_A) 0.5000 0.7000 2.3499 ( 0 10 21) 0 0.5714 0.7998 14 10
( 247 1az9 ) ( 1305 1exq_A) 0.3571 0.5554 5.0550 ( 0 6 10) 0 0.4389 0.5555 14 9
( 247 1az9 ) ( 1522 1fjg_K) 0.5000 0.9994 3.5282 ( 0 11 21) 0 0.5000 0.9994 14 7
( 247 1az9 ) ( 1656 1fxx_A) 0.4286 0.1935 4.2954 ( 0 10 15) 0 0.5167 0.3143 14 31
( 247 1az9 ) ( 1778 1g99_A) 0.5714 0.7271 3.7759 ( 0 16 28) 0 0.5714 0.7271 14 11
( 247 1az9 ) ( 1779 1g99_A) 0.7129 0.6243 6.6744 ( 0 29 45) 0 0.7129 0.6243 14 16
( 247 1az9 ) ( 2218 1hjr_A) 0.3571 0.4998 6.4487 ( 0 6 10) 0 0.7130 0.9930 14 10
( 247 1az9 ) ( 2296 1hux_A) 0.5000 0.3889 3.8277 ( 0 15 21) 0 0.5699 0.4440 14 18
( 247 1az9 ) ( 2378 1i39_A) 0.4285 0.4614 6.3809 ( 0 10 15) 0 0.4455 0.4614 14 13
( 247 1az9 ) ( 2483 1ig8_A) 0.2857 0.3636 6.6872 ( 0 4 6) 0 0.5081 0.5742 14 11
( 247 1az9 ) ( 2484 1ig8_A) 0.4997 0.4665 6.9197 ( 0 13 21) 0 0.4997 0.4665 14 15
( 247 1az9 ) ( 2491 1ih7_A) 0.2857 0.1481 5.1109 ( 0 4 6) 0 0.8339 0.4435 14 27
( 247 1az9 ) ( 2619 1iv0_A) 0.5000 0.9999 2.4660 ( 0 11 21) 0 0.5000 0.9999 14 7
( 247 1az9 ) ( 2733 1j54_A) 0.3513 0.4045 6.3512 ( 1 7 10) 0 0.7058 0.8153 14 12
( 247 1az9 ) ( 2775 1j9a_A) 0.4454 0.4454 6.2102 ( 3 15 28) 0 0.6423 0.6423 14 14
( 247 1az9 ) ( 2821 1jce_A) 0.5684 0.6602 4.0163 ( 1 15 28) 0 0.5684 0.6602 14 12
( 247 1az9 ) ( 2822 1jce_A) 0.4999 0.4666 4.8086 ( 0 11 21) 0 0.5501 0.5179 14 15
( 247 1az9 ) ( 2910 1jj2_M) 0.4286 0.5454 3.4199 ( 0 7 15) 0 0.4286 0.5454 14 11
( 247 1az9 ) ( 2954 1jl1_A) 0.3571 0.4999 5.6027 ( 0 6 10) 0 0.3571 0.4999 14 10
( 247 1az9 ) ( 3210 1k8k_A) 0.2856 0.2499 12.1877 ( 0 4 6) 0 0.3467 0.3070 14 16
( 247 1az9 ) ( 3260 1kcf_A) 0.2857 0.3333 4.7142 ( 0 4 6) 0 0.7122 0.8289 14 12
( 247 1az9 ) ( 3286 1kfs_A) 0.3567 0.4157 11.8096 ( 0 8 10) 0 0.5027 0.5449 14 12
( 247 1az9 ) ( 3925 1mgt_A) 0.2857 0.6649 7.7677 ( 0 2 6) 0 0.2857 0.6649 14 6
( 247 1az9 ) ( 4043 1mus_A) 0.3571 0.1852 7.4477 ( 0 6 10) 0 0.7121 0.3703 14 27
( 247 1az9 ) ( 4057 1mwm_A) 0.4784 0.5238 5.0903 ( 3 17 28) 0 0.4999 0.6361 14 11
( 247 1az9 ) ( 4058 1mwm_A) 0.2857 0.3636 6.3027 ( 0 2 6) 0 0.5498 0.6640 14 11
( 247 1az9 ) ( 4191 1nbw_A) 0.2857 0.2222 5.2379 ( 0 1 6) 0 0.5690 0.4438 14 18
( 247 1az9 ) ( 4193 1nbw_A) 0.4999 0.4374 5.9377 ( 0 11 21) 0 0.5711 0.4998 14 16
( 247 1az9 ) ( 4281 1nk4_A) 0.3513 0.4045 5.6830 ( 1 7 10) 0 0.3513 0.4045 14 12
( 247 1az9 ) ( 4391 1nu0_A) 0.3571 0.6246 5.9141 ( 0 6 10) 0 0.5712 0.9963 14 8
( 247 1az9 ) ( 4469 1o13_A) 0.3571 0.6246 5.7889 ( 0 7 10) 0 0.5713 0.9983 14 8
( 247 1az9 ) ( 4935 1p90_A) 0.3571 0.5000 4.4808 ( 0 4 10) 0 0.5712 0.7987 14 10
( 247 1az9 ) ( 5120 1pv9_A) 0.8563 0.9981 4.4722 ( 1 52 66) 0 0.8563 0.9981 14 12
( 247 1az9 ) ( 5243 1q8i_A) 0.6411 0.3214 3.8501 ( 1 20 36) 0 0.7133 0.3571 14 28
( 247 1az9 ) ( 5447 1qtm_A) 0.3473 0.3880 5.8203 ( 2 8 15) 0 0.3473 0.4444 14 9
( 247 1az9 ) ( 5500 1qz5_A) 0.5684 0.7174 3.8472 ( 1 15 28) 0 0.5684 0.7174 14 11
( 247 1az9 ) ( 5501 1qz5_A) 0.3473 0.3021 4.1705 ( 2 8 15) 0 0.5031 0.4209 14 18
( 247 1az9 ) ( 5883 1t7p_A) 0.2857 0.3333 4.9295 ( 0 4 6) 0 0.6407 0.7454 14 12
( 247 1az9 ) ( 5906 1tgo_A) 0.3569 0.1852 10.2731 ( 0 5 10) 0 0.7135 0.3703 14 27
( 247 1az9 ) ( 6064 1uoc_A) 0.2856 0.2353 9.7576 ( 0 3 6) 0 0.4263 0.3521 14 17
( 247 1az9 ) ( 6249 1vhx_A) 0.3571 0.4999 5.0889 ( 0 7 10) 0 0.5713 0.7992 14 10
( 247 1az9 ) ( 6299 1vk0_A) 0.3571 0.3333 7.1270 ( 0 6 10) 0 0.5721 0.5467 14 15
( 247 1az9 ) ( 6323 1vrt_A) 0.4999 0.8738 4.9900 ( 0 6 21) 0 0.4999 0.8738 14 8
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