------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2483 1ig8_A) ( 247 1az9 ) 0.3636 0.2857 6.6872 ( 0 4 6) 0 0.5742 0.5081 11 14 ( 2483 1ig8_A) ( 345 1bco ) 0.6360 0.6360 5.6662 ( 0 11 21) 0 0.6360 0.6360 11 11 ( 2483 1ig8_A) ( 463 1bu6_O) 0.7271 0.4444 4.0645 ( 0 18 28) 0 0.7271 0.4444 11 18 ( 2483 1ig8_A) ( 464 1bu6_O) 0.7211 0.4699 3.8183 ( 1 17 28) 0 0.7211 0.4699 11 17 ( 2483 1ig8_A) ( 471 1bup_A) 0.7270 0.5000 4.3910 ( 0 19 28) 0 0.7270 0.5000 11 16 ( 2483 1ig8_A) ( 472 1bup_A) 0.6363 0.5833 2.6965 ( 0 11 21) 0 0.6363 0.5833 11 12 ( 2483 1ig8_A) ( 592 1chm_A) 0.3636 0.3333 7.6079 ( 0 5 6) 0 0.6381 0.6039 11 12 ( 2483 1ig8_A) ( 703 1cxq_A) 0.6361 0.6996 4.9830 ( 0 14 21) 0 0.6361 0.6996 11 10 ( 2483 1ig8_A) ( 713 1cza_N) 0.8911 0.9716 3.4753 ( 2 34 45) 0 0.8911 0.9716 11 10 ( 2483 1ig8_A) ( 714 1cza_N) 0.3634 0.2856 9.8976 ( 0 3 6) 0 0.6183 0.4943 11 14 ( 2483 1ig8_A) ( 934 1dt9_A) 0.7208 0.8718 4.9946 ( 1 17 28) 0 0.7208 0.8718 11 9 ( 2483 1ig8_A) ( 1021 1e3m_A) 0.3556 0.3769 5.8240 ( 1 4 10) 0 0.3857 0.3933 11 9 ( 2483 1ig8_A) ( 1033 1e4f_T) 0.7271 0.5714 3.7363 ( 0 19 28) 0 0.7271 0.5714 11 14 ( 2483 1ig8_A) ( 1034 1e4f_T) 0.7921 0.6805 4.7708 ( 2 27 36) 0 0.7921 0.6805 11 13 ( 2483 1ig8_A) ( 1191 1eke_A) 0.8148 0.6418 4.6264 ( 1 24 36) 0 0.8148 0.6418 11 14 ( 2483 1ig8_A) ( 1223 1eo1_A) 0.6363 0.8746 3.8041 ( 0 11 21) 0 0.6363 0.8746 11 8 ( 2483 1ig8_A) ( 1289 1ewq_A) 0.7101 0.7730 4.9558 ( 1 13 28) 0 0.7101 0.7730 11 10 ( 2483 1ig8_A) ( 1305 1exq_A) 0.3414 0.3928 12.5868 ( 1 5 6) 0 0.4545 0.5554 11 9 ( 2483 1ig8_A) ( 1522 1fjg_K) 0.6362 0.9980 4.7672 ( 0 10 21) 0 0.6362 0.9980 11 7 ( 2483 1ig8_A) ( 1656 1fxx_A) 0.7188 0.2580 5.9431 ( 1 16 28) 0 0.7188 0.2580 11 31 ( 2483 1ig8_A) ( 1778 1g99_A) 0.6363 0.6363 3.9677 ( 0 14 21) 0 0.6363 0.6363 11 11 ( 2483 1ig8_A) ( 1779 1g99_A) 0.7267 0.4999 5.2616 ( 0 20 28) 0 0.7267 0.4999 11 16 ( 2483 1ig8_A) ( 2218 1hjr_A) 0.7269 0.7995 4.5471 ( 0 13 28) 0 0.7269 0.7995 11 10 ( 2483 1ig8_A) ( 2296 1hux_A) 0.7210 0.4439 4.4396 ( 1 17 28) 0 0.7210 0.4439 11 18 ( 2483 1ig8_A) ( 2378 1i39_A) 0.7246 0.6142 3.4808 ( 1 21 28) 0 0.7246 0.6142 11 13 ( 2483 1ig8_A) ( 2483 1ig8_A) 1.0000 1.0000 0.0000 ( 0 47 55) 0 1.0000 1.0000 11 11 ( 2483 1ig8_A) ( 2484 1ig8_A) 0.8134 0.5990 6.5005 ( 1 25 36) 0 0.8134 0.5990 11 15 ( 2483 1ig8_A) ( 2491 1ih7_A) 0.4545 0.1852 5.5269 ( 0 3 10) 0 0.6652 0.2954 11 27 ( 2483 1ig8_A) ( 2619 1iv0_A) 0.6242 0.9052 4.6645 ( 1 12 21) 0 0.6242 0.9052 11 7 ( 2483 1ig8_A) ( 2733 1j54_A) 0.6273 0.5774 5.0457 ( 1 13 21) 0 0.6273 0.5774 11 12 ( 2483 1ig8_A) ( 2775 1j9a_A) 0.6828 0.5568 6.4649 ( 2 20 28) 0 0.6828 0.5887 11 14 ( 2483 1ig8_A) ( 2821 1jce_A) 0.8142 0.7474 4.8921 ( 1 23 36) 0 0.8142 0.7474 11 12 ( 2483 1ig8_A) ( 2822 1jce_A) 0.8159 0.5995 4.4582 ( 1 27 36) 0 0.8159 0.5995 11 15 ( 2483 1ig8_A) ( 2910 1jj2_M) 0.3634 0.3634 10.4006 ( 0 3 6) 0 0.4922 0.4922 11 11 ( 2483 1ig8_A) ( 2954 1jl1_A) 0.6359 0.6992 5.9148 ( 0 10 21) 0 0.6359 0.6992 11 10 ( 2483 1ig8_A) ( 3210 1k8k_A) 0.6359 0.4374 5.8451 ( 0 11 21) 0 0.6359 0.4374 11 16 ( 2483 1ig8_A) ( 3260 1kcf_A) 0.6017 0.5600 4.5172 ( 1 9 21) 0 0.6017 0.5736 11 12 ( 2483 1ig8_A) ( 3286 1kfs_A) 0.6362 0.5832 4.7928 ( 0 14 21) 0 0.6362 0.5832 11 12 ( 2483 1ig8_A) ( 3925 1mgt_A) 0.3636 0.6652 7.3719 ( 0 2 6) 0 0.3636 0.6656 11 6 ( 2483 1ig8_A) ( 4043 1mus_A) 0.6359 0.2593 5.7531 ( 0 12 21) 0 0.6359 0.2593 11 27 ( 2483 1ig8_A) ( 4057 1mwm_A) 0.7232 0.7232 4.2673 ( 1 19 28) 0 0.7232 0.7232 11 11 ( 2483 1ig8_A) ( 4058 1mwm_A) 0.6241 0.6241 4.9673 ( 1 12 21) 0 0.6241 0.6241 11 11 ( 2483 1ig8_A) ( 4191 1nbw_A) 0.7224 0.4440 3.7303 ( 1 18 28) 0 0.7878 0.4972 11 18 ( 2483 1ig8_A) ( 4193 1nbw_A) 0.7211 0.4990 4.0549 ( 1 17 28) 0 0.7211 0.5365 11 16 ( 2483 1ig8_A) ( 4281 1nk4_A) 0.6241 0.5753 4.9673 ( 1 12 21) 0 0.6241 0.5753 11 12 ( 2483 1ig8_A) ( 4391 1nu0_A) 0.6361 0.8735 5.2680 ( 0 12 21) 0 0.6361 0.8735 11 8 ( 2483 1ig8_A) ( 4469 1o13_A) 0.7210 0.9708 4.4330 ( 1 17 28) 0 0.7210 0.9708 11 8 ( 2483 1ig8_A) ( 4935 1p90_A) 0.7240 0.7947 3.7138 ( 1 20 28) 0 0.7240 0.7947 11 10 ( 2483 1ig8_A) ( 5120 1pv9_A) 0.6362 0.5832 4.7466 ( 0 13 21) 0 0.6362 0.5832 11 12 ( 2483 1ig8_A) ( 5243 1q8i_A) 0.6361 0.2500 5.1176 ( 0 10 21) 0 0.6361 0.2666 11 28 ( 2483 1ig8_A) ( 5447 1qtm_A) 0.3635 0.4442 8.1317 ( 0 2 6) 0 0.3635 0.4442 11 9 ( 2483 1ig8_A) ( 5500 1qz5_A) 0.7271 0.7271 3.7014 ( 0 16 28) 0 0.7271 0.7271 11 11 ( 2483 1ig8_A) ( 5501 1qz5_A) 0.6359 0.3888 5.9178 ( 0 13 21) 0 0.6359 0.3888 11 18 ( 2483 1ig8_A) ( 5883 1t7p_A) 0.4545 0.4166 4.5292 ( 0 6 10) 0 0.4545 0.4166 11 12 ( 2483 1ig8_A) ( 5906 1tgo_A) 0.6195 0.2591 5.0234 ( 1 11 21) 0 0.6353 0.2739 11 27 ( 2483 1ig8_A) ( 6064 1uoc_A) 0.3416 0.2325 11.2132 ( 1 5 6) 0 0.7217 0.4699 11 17 ( 2483 1ig8_A) ( 6249 1vhx_A) 0.7169 0.7835 5.5240 ( 1 15 28) 0 0.7169 0.7835 11 10 ( 2483 1ig8_A) ( 6299 1vk0_A) 0.6272 0.4647 5.3903 ( 1 13 21) 0 0.6272 0.4647 11 15 ( 2483 1ig8_A) ( 6323 1vrt_A) 0.6273 0.8340 5.1448 ( 1 13 21) 0 0.6273 0.8340 11 8 -------------------------------------------------------------------------------------------------------------------------