------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2733 1j54_A) ( 247 1az9 ) 0.4045 0.3513 6.3512 ( 1 7 10) 0 0.8153 0.7058 12 14 ( 2733 1j54_A) ( 345 1bco ) 0.5827 0.6353 7.1455 ( 0 10 21) 0 0.5827 0.6353 12 11 ( 2733 1j54_A) ( 463 1bu6_O) 0.4825 0.3309 3.6189 ( 1 8 15) 0 0.4825 0.3678 12 18 ( 2733 1j54_A) ( 464 1bu6_O) 0.4082 0.2926 12.7783 ( 1 8 10) 0 0.6658 0.4770 12 17 ( 2733 1j54_A) ( 471 1bup_A) 0.5772 0.4360 6.1672 ( 1 13 21) 0 0.5772 0.4360 12 16 ( 2733 1j54_A) ( 472 1bup_A) 0.5719 0.5719 6.4122 ( 1 11 21) 0 0.5719 0.5719 12 12 ( 2733 1j54_A) ( 592 1chm_A) 0.4999 0.4999 4.7360 ( 0 11 15) 0 0.7475 0.7475 12 12 ( 2733 1j54_A) ( 703 1cxq_A) 0.4999 0.5997 5.5915 ( 0 9 15) 0 0.4999 0.5997 12 10 ( 2733 1j54_A) ( 713 1cza_N) 0.5798 0.6913 5.6477 ( 1 15 21) 0 0.5798 0.6913 12 10 ( 2733 1j54_A) ( 714 1cza_N) 0.3435 0.3385 9.3530 ( 6 21 28) 0 0.3965 0.3688 12 14 ( 2733 1j54_A) ( 934 1dt9_A) 0.5830 0.7766 5.8030 ( 0 15 21) 0 0.5830 0.7766 12 9 ( 2733 1j54_A) ( 1021 1e3m_A) 0.5833 0.7775 3.9323 ( 0 11 21) 0 0.6613 0.8672 12 9 ( 2733 1j54_A) ( 1033 1e4f_T) 0.5804 0.4986 6.2276 ( 1 16 21) 0 0.5804 0.4986 12 14 ( 2733 1j54_A) ( 1034 1e4f_T) 0.6631 0.6130 6.8254 ( 1 19 28) 0 0.6631 0.6130 12 13 ( 2733 1j54_A) ( 1191 1eke_A) 0.4165 0.3571 7.4685 ( 0 6 10) 0 0.4165 0.3571 12 14 ( 2733 1j54_A) ( 1223 1eo1_A) nil ( 2733 1j54_A) ( 1289 1ewq_A) 0.5833 0.6999 3.2157 ( 0 9 21) 0 0.5833 0.6999 12 10 ( 2733 1j54_A) ( 1305 1exq_A) 0.4166 0.5552 6.2792 ( 0 1 10) 0 0.4166 0.5552 12 9 ( 2733 1j54_A) ( 1522 1fjg_K) 0.4999 0.8561 4.8962 ( 0 7 15) 0 0.4999 0.8561 12 7 ( 2733 1j54_A) ( 1656 1fxx_A) 0.9952 0.3871 2.3264 ( 2 54 66) 0 0.9952 0.3871 12 31 ( 2733 1j54_A) ( 1778 1g99_A) 0.5788 0.6295 5.1621 ( 1 14 21) 0 0.5788 0.6295 12 11 ( 2733 1j54_A) ( 1779 1g99_A) 0.3331 0.2499 10.9996 ( 0 2 6) 0 0.6632 0.4992 12 16 ( 2733 1j54_A) ( 2218 1hjr_A) 0.7479 0.8948 6.9702 ( 0 22 36) 0 0.7479 0.8948 12 10 ( 2733 1j54_A) ( 2296 1hux_A) 0.4162 0.2777 9.7232 ( 0 7 10) 0 0.4162 0.3314 12 18 ( 2733 1j54_A) ( 2378 1i39_A) 0.4825 0.4495 5.0142 ( 1 8 15) 0 0.4915 0.4558 12 13 ( 2733 1j54_A) ( 2483 1ig8_A) 0.5774 0.6273 5.0457 ( 1 13 21) 0 0.5774 0.6273 12 11 ( 2733 1j54_A) ( 2484 1ig8_A) 0.5280 0.4458 7.9977 ( 2 14 21) 0 0.5280 0.4458 12 15 ( 2733 1j54_A) ( 2491 1ih7_A) 0.8324 0.3704 3.0773 ( 1 34 45) 0 0.9089 0.4073 12 27 ( 2733 1j54_A) ( 2619 1iv0_A) 0.5000 0.8570 2.9939 ( 0 7 15) 0 0.5000 0.8570 12 7 ( 2733 1j54_A) ( 2733 1j54_A) 1.0000 1.0000 0.0000 ( 0 54 66) 0 1.0000 1.0000 12 12 ( 2733 1j54_A) ( 2775 1j9a_A) 0.7482 0.6420 4.7714 ( 1 26 36) 0 0.7858 0.6908 12 14 ( 2733 1j54_A) ( 2821 1jce_A) 0.4999 0.4999 5.4174 ( 0 10 15) 0 0.6148 0.6148 12 12 ( 2733 1j54_A) ( 2822 1jce_A) 0.5773 0.4647 5.8390 ( 1 13 21) 0 0.5773 0.4893 12 15 ( 2733 1j54_A) ( 2910 1jj2_M) 0.3333 0.3636 4.0951 ( 0 4 6) 0 0.4488 0.4611 12 11 ( 2733 1j54_A) ( 2954 1jl1_A) 0.4166 0.4998 6.6958 ( 0 4 10) 0 0.4166 0.4998 12 10 ( 2733 1j54_A) ( 3210 1k8k_A) 0.5146 0.4175 5.9817 ( 2 13 21) 0 0.5146 0.4175 12 16 ( 2733 1j54_A) ( 3260 1kcf_A) 0.7481 0.7481 6.7522 ( 0 24 36) 0 0.7481 0.7481 12 12 ( 2733 1j54_A) ( 3286 1kfs_A) 0.7075 0.7075 3.1428 ( 4 34 45) 0 0.8215 0.8215 12 12 ( 2733 1j54_A) ( 3925 1mgt_A) 0.3332 0.6633 9.0495 ( 0 3 6) 0 0.3332 0.6633 12 6 ( 2733 1j54_A) ( 4043 1mus_A) 0.5749 0.2591 6.9713 ( 1 12 21) 0 0.5749 0.2591 12 27 ( 2733 1j54_A) ( 4057 1mwm_A) 0.6640 0.7232 5.9356 ( 1 20 28) 0 0.6640 0.7232 12 11 ( 2733 1j54_A) ( 4058 1mwm_A) 0.3333 0.3635 8.2846 ( 0 4 6) 0 0.6225 0.6632 12 11 ( 2733 1j54_A) ( 4191 1nbw_A) 0.5286 0.3801 4.9618 ( 2 14 21) 0 0.5286 0.3801 12 18 ( 2733 1j54_A) ( 4193 1nbw_A) 0.5000 0.3750 3.8437 ( 0 9 15) 0 0.5830 0.4374 12 16 ( 2733 1j54_A) ( 4281 1nk4_A) 0.7697 0.7697 3.8269 ( 3 32 45) 0 0.7697 0.7697 12 12 ( 2733 1j54_A) ( 4391 1nu0_A) 0.6661 0.9960 5.7148 ( 0 17 28) 0 0.6661 0.9960 12 8 ( 2733 1j54_A) ( 4469 1o13_A) 0.5832 0.8743 4.3130 ( 0 13 21) 0 0.5832 0.8743 12 8 ( 2733 1j54_A) ( 4935 1p90_A) 0.5832 0.6996 5.1347 ( 0 12 21) 0 0.5832 0.6996 12 10 ( 2733 1j54_A) ( 5120 1pv9_A) 0.6312 0.6312 5.1390 ( 2 19 28) 0 0.6312 0.6312 12 12 ( 2733 1j54_A) ( 5243 1q8i_A) 0.6971 0.3541 2.9891 ( 4 33 45) 0 0.8097 0.3908 12 28 ( 2733 1j54_A) ( 5447 1qtm_A) 0.6626 0.8723 4.3694 ( 1 17 28) 0 0.6626 0.8723 12 9 ( 2733 1j54_A) ( 5500 1qz5_A) 0.5832 0.6361 4.8986 ( 0 12 21) 0 0.5832 0.6361 12 11 ( 2733 1j54_A) ( 5501 1qz5_A) 0.4090 0.3651 5.7810 ( 4 17 28) 0 0.4090 0.3651 12 18 ( 2733 1j54_A) ( 5883 1t7p_A) 0.5396 0.5396 6.3289 ( 6 34 45) 0 0.5396 0.5396 12 12 ( 2733 1j54_A) ( 5906 1tgo_A) 0.8322 0.3704 3.7600 ( 1 33 45) 0 0.9149 0.4074 12 27 ( 2733 1j54_A) ( 6064 1uoc_A) 0.9993 0.7058 3.1266 ( 1 51 66) 0 0.9993 0.7058 12 17 ( 2733 1j54_A) ( 6249 1vhx_A) 0.6663 0.7992 5.0970 ( 0 17 28) 0 0.6663 0.7992 12 10 ( 2733 1j54_A) ( 6299 1vk0_A) 0.8164 0.6610 4.0130 ( 2 31 45) 0 0.8164 0.6610 12 15 ( 2733 1j54_A) ( 6323 1vrt_A) 0.4167 0.6249 3.7218 ( 0 5 10) 0 0.4718 0.6249 12 8 -------------------------------------------------------------------------------------------------------------------------