------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2775 1j9a_A) ( 247 1az9 ) 0.4454 0.4454 6.2102 ( 3 15 28) 0 0.6423 0.6423 14 14 ( 2775 1j9a_A) ( 345 1bco ) 0.3571 0.4544 6.9293 ( 0 3 10) 0 0.3571 0.4544 14 11 ( 2775 1j9a_A) ( 463 1bu6_O) 0.2857 0.2222 7.7245 ( 0 4 6) 0 0.3156 0.2802 14 18 ( 2775 1j9a_A) ( 464 1bu6_O) 0.5209 0.4491 6.8934 ( 3 21 28) 0 0.5209 0.4491 14 17 ( 2775 1j9a_A) ( 471 1bup_A) 0.5282 0.4761 5.2417 ( 3 22 28) 0 0.5282 0.4874 14 16 ( 2775 1j9a_A) ( 472 1bup_A) 0.4285 0.4997 6.8383 ( 0 7 15) 0 0.4285 0.4997 14 12 ( 2775 1j9a_A) ( 592 1chm_A) 0.3571 0.4166 6.8490 ( 0 6 10) 0 0.4998 0.5830 14 12 ( 2775 1j9a_A) ( 703 1cxq_A) 0.3571 0.4997 6.9343 ( 0 4 10) 0 0.3571 0.4997 14 10 ( 2775 1j9a_A) ( 713 1cza_N) 0.5568 0.7329 6.2906 ( 2 20 28) 0 0.5568 0.7329 14 10 ( 2775 1j9a_A) ( 714 1cza_N) 0.2857 0.2857 8.5722 ( 0 3 6) 0 0.3633 0.3633 14 14 ( 2775 1j9a_A) ( 934 1dt9_A) 0.5711 0.8862 6.0041 ( 0 20 28) 0 0.5711 0.8862 14 9 ( 2775 1j9a_A) ( 1021 1e3m_A) 0.5643 0.8320 3.7409 ( 1 12 28) 0 0.5643 0.8320 14 9 ( 2775 1j9a_A) ( 1033 1e4f_T) 0.2855 0.2855 13.3844 ( 0 5 6) 0 0.2856 0.2856 14 14 ( 2775 1j9a_A) ( 1034 1e4f_T) 0.4454 0.4566 6.2970 ( 4 20 28) 0 0.4454 0.4614 14 13 ( 2775 1j9a_A) ( 1191 1eke_A) 0.3962 0.3962 6.7905 ( 2 11 15) 0 0.3962 0.3962 14 14 ( 2775 1j9a_A) ( 1223 1eo1_A) 0.4999 0.8732 5.4942 ( 0 14 21) 0 0.4999 0.8732 14 8 ( 2775 1j9a_A) ( 1289 1ewq_A) 0.5714 0.7996 4.1805 ( 0 16 28) 0 0.5714 0.7996 14 10 ( 2775 1j9a_A) ( 1305 1exq_A) 0.3571 0.5553 6.0387 ( 0 4 10) 0 0.3961 0.5553 14 9 ( 2775 1j9a_A) ( 1522 1fjg_K) 0.4285 0.8558 5.2463 ( 0 8 15) 0 0.4285 0.8558 14 7 ( 2775 1j9a_A) ( 1656 1fxx_A) 0.5714 0.2581 2.8768 ( 0 23 28) 0 0.7373 0.3538 14 31 ( 2775 1j9a_A) ( 1778 1g99_A) 0.5502 0.6652 5.0058 ( 2 18 28) 0 0.5502 0.6652 14 11 ( 2775 1j9a_A) ( 1779 1g99_A) 0.4999 0.4375 4.9293 ( 0 15 21) 0 0.6345 0.5581 14 16 ( 2775 1j9a_A) ( 2218 1hjr_A) 0.5704 0.7943 5.9744 ( 1 21 28) 0 0.5704 0.7943 14 10 ( 2775 1j9a_A) ( 2296 1hux_A) 0.3549 0.2771 6.9452 ( 1 9 10) 0 0.4285 0.3333 14 18 ( 2775 1j9a_A) ( 2378 1i39_A) 0.3569 0.3843 9.9379 ( 0 7 10) 0 0.3571 0.3846 14 13 ( 2775 1j9a_A) ( 2483 1ig8_A) 0.5887 0.6791 6.5472 ( 3 24 36) 0 0.5887 0.6828 14 11 ( 2775 1j9a_A) ( 2484 1ig8_A) 0.3571 0.3333 7.8124 ( 0 3 10) 0 0.3571 0.3333 14 15 ( 2775 1j9a_A) ( 2491 1ih7_A) 0.6821 0.3690 4.1605 ( 3 32 45) 0 0.7336 0.4302 14 27 ( 2775 1j9a_A) ( 2619 1iv0_A) 0.2857 0.5713 4.9263 ( 0 4 6) 0 0.2857 0.5713 14 7 ( 2775 1j9a_A) ( 2733 1j54_A) 0.6420 0.7482 4.7714 ( 1 26 36) 0 0.6908 0.7858 14 12 ( 2775 1j9a_A) ( 2775 1j9a_A) 1.0000 1.0000 0.0000 ( 0 78 91) 0 1.0000 1.0000 14 14 ( 2775 1j9a_A) ( 2821 1jce_A) 0.5031 0.5455 5.5530 ( 3 19 28) 0 0.5031 0.5831 14 12 ( 2775 1j9a_A) ( 2822 1jce_A) 0.4977 0.4651 6.7950 ( 1 14 21) 0 0.4977 0.4651 14 15 ( 2775 1j9a_A) ( 2910 1jj2_M) 0.2857 0.3636 5.4735 ( 0 6 6) 0 0.3467 0.4232 14 11 ( 2775 1j9a_A) ( 2954 1jl1_A) 0.2857 0.3999 6.0136 ( 0 3 6) 0 0.2857 0.3999 14 10 ( 2775 1j9a_A) ( 3210 1k8k_A) 0.3083 0.2952 6.5726 ( 3 10 15) 0 0.3083 0.2952 14 16 ( 2775 1j9a_A) ( 3260 1kcf_A) 0.4285 0.4998 6.6993 ( 0 8 15) 0 0.4285 0.4998 14 12 ( 2775 1j9a_A) ( 3286 1kfs_A) 0.6067 0.6796 3.9340 ( 3 27 36) 0 0.7135 0.8317 14 12 ( 2775 1j9a_A) ( 3925 1mgt_A) 0.1895 0.1996 7.7779 ( 2 4 6) 0 0.2856 0.6619 14 6 ( 2775 1j9a_A) ( 4043 1mus_A) 0.3571 0.1852 6.1256 ( 0 7 10) 0 0.4042 0.2575 14 27 ( 2775 1j9a_A) ( 4057 1mwm_A) 0.5592 0.6896 6.2879 ( 2 21 28) 0 0.5592 0.6896 14 11 ( 2775 1j9a_A) ( 4058 1mwm_A) 0.2857 0.3636 6.1017 ( 0 3 6) 0 0.4996 0.6352 14 11 ( 2775 1j9a_A) ( 4191 1nbw_A) 0.1895 0.1763 15.9739 ( 2 4 6) 0 0.2856 0.2222 14 18 ( 2775 1j9a_A) ( 4193 1nbw_A) 0.4717 0.4221 6.8512 ( 2 14 21) 0 0.4717 0.4221 14 16 ( 2775 1j9a_A) ( 4281 1nk4_A) 0.6347 0.7329 4.3071 ( 2 27 36) 0 0.6423 0.7487 14 12 ( 2775 1j9a_A) ( 4391 1nu0_A) 0.3571 0.6246 5.8860 ( 0 6 10) 0 0.4285 0.7489 14 8 ( 2775 1j9a_A) ( 4469 1o13_A) 0.4999 0.8739 4.8989 ( 0 15 21) 0 0.4999 0.8739 14 8 ( 2775 1j9a_A) ( 4935 1p90_A) 0.5453 0.6914 5.9536 ( 2 17 28) 0 0.5453 0.6993 14 10 ( 2775 1j9a_A) ( 5120 1pv9_A) 0.5711 0.6660 5.9307 ( 0 19 28) 0 0.5711 0.6660 14 12 ( 2775 1j9a_A) ( 5243 1q8i_A) 0.3537 0.1785 6.1784 ( 1 8 10) 0 0.6854 0.3561 14 28 ( 2775 1j9a_A) ( 5447 1qtm_A) 0.4980 0.7602 3.4040 ( 1 14 21) 0 0.4980 0.7602 14 9 ( 2775 1j9a_A) ( 5500 1qz5_A) 0.3975 0.4134 5.7377 ( 4 17 28) 0 0.3975 0.4134 14 11 ( 2775 1j9a_A) ( 5501 1qz5_A) 0.3513 0.2761 5.2968 ( 1 7 10) 0 0.3513 0.2761 14 18 ( 2775 1j9a_A) ( 5883 1t7p_A) 0.6348 0.7329 3.9254 ( 2 27 36) 0 0.7078 0.8196 14 12 ( 2775 1j9a_A) ( 5906 1tgo_A) 0.2857 0.1481 6.8405 ( 0 4 6) 0 0.6932 0.3695 14 27 ( 2775 1j9a_A) ( 6064 1uoc_A) 0.7097 0.5865 4.1787 ( 2 36 45) 0 0.7097 0.6035 14 17 ( 2775 1j9a_A) ( 6249 1vhx_A) 0.5712 0.7989 5.4518 ( 0 19 28) 0 0.5712 0.7989 14 10 ( 2775 1j9a_A) ( 6299 1vk0_A) 0.5614 0.5262 3.4901 ( 2 22 28) 0 0.6981 0.6550 14 15 ( 2775 1j9a_A) ( 6323 1vrt_A) 0.4998 0.8724 6.0492 ( 0 9 21) 0 0.4998 0.8724 14 8 -------------------------------------------------------------------------------------------------------------------------