------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2821 1jce_A) ( 247 1az9 ) 0.6602 0.5684 4.0163 ( 1 15 28) 0 0.6602 0.5684 12 14 ( 2821 1jce_A) ( 345 1bco ) 0.5832 0.6361 4.8630 ( 0 12 21) 0 0.5832 0.6361 12 11 ( 2821 1jce_A) ( 463 1bu6_O) 0.4092 0.2768 7.5893 ( 1 8 10) 0 0.5000 0.3333 12 18 ( 2821 1jce_A) ( 464 1bu6_O) 0.6707 0.5124 5.0059 ( 3 26 36) 0 0.8003 0.6210 12 17 ( 2821 1jce_A) ( 471 1bup_A) 0.7048 0.6334 4.8698 ( 7 53 66) 0 0.7048 0.6334 12 16 ( 2821 1jce_A) ( 472 1bup_A) 0.6644 0.6644 8.1874 ( 0 15 28) 0 0.6644 0.6644 12 12 ( 2821 1jce_A) ( 592 1chm_A) 0.6635 0.6635 3.4880 ( 1 18 28) 0 0.6635 0.6635 12 12 ( 2821 1jce_A) ( 703 1cxq_A) 0.5833 0.6998 4.1345 ( 0 14 21) 0 0.5833 0.6998 12 10 ( 2821 1jce_A) ( 713 1cza_N) 0.6665 0.7997 3.9874 ( 0 21 28) 0 0.6665 0.7997 12 10 ( 2821 1jce_A) ( 714 1cza_N) 0.7095 0.6230 9.0382 ( 2 22 36) 0 0.7095 0.6230 12 14 ( 2821 1jce_A) ( 934 1dt9_A) 0.5833 0.7775 4.0570 ( 0 14 21) 0 0.5833 0.7775 12 9 ( 2821 1jce_A) ( 1021 1e3m_A) 0.5600 0.6960 4.0752 ( 1 9 21) 0 0.5600 0.6960 12 9 ( 2821 1jce_A) ( 1033 1e4f_T) 0.6666 0.5714 3.5477 ( 0 22 28) 0 0.6666 0.5714 12 14 ( 2821 1jce_A) ( 1034 1e4f_T) 0.7489 0.6916 5.8818 ( 0 24 36) 0 0.7489 0.6916 12 13 ( 2821 1jce_A) ( 1191 1eke_A) 0.6665 0.5714 3.9965 ( 0 20 28) 0 0.6665 0.5714 12 14 ( 2821 1jce_A) ( 1223 1eo1_A) 0.5833 0.8748 2.9659 ( 0 11 21) 0 0.5833 0.8748 12 8 ( 2821 1jce_A) ( 1289 1ewq_A) 0.5833 0.6999 3.3886 ( 0 10 21) 0 0.5833 0.6999 12 10 ( 2821 1jce_A) ( 1305 1exq_A) 0.3333 0.4443 7.3064 ( 0 5 6) 0 0.4044 0.5108 12 9 ( 2821 1jce_A) ( 1522 1fjg_K) 0.5833 0.9995 3.3743 ( 0 10 21) 0 0.5833 0.9995 12 7 ( 2821 1jce_A) ( 1656 1fxx_A) 0.5736 0.2569 5.1416 ( 2 14 28) 0 0.5736 0.2569 12 31 ( 2821 1jce_A) ( 1778 1g99_A) 0.4166 0.4545 4.7830 ( 0 6 10) 0 0.8192 0.8876 12 11 ( 2821 1jce_A) ( 1779 1g99_A) 0.7468 0.5617 6.3274 ( 1 24 36) 0 0.7468 0.5617 12 16 ( 2821 1jce_A) ( 2218 1hjr_A) 0.6627 0.7902 3.8785 ( 1 17 28) 0 0.6627 0.7902 12 10 ( 2821 1jce_A) ( 2296 1hux_A) 0.6623 0.4439 7.1478 ( 1 18 28) 0 0.6623 0.4439 12 18 ( 2821 1jce_A) ( 2378 1i39_A) 0.6634 0.6132 4.0656 ( 1 18 28) 0 0.6634 0.6132 12 13 ( 2821 1jce_A) ( 2483 1ig8_A) 0.7474 0.8142 4.8921 ( 1 23 36) 0 0.7474 0.8142 12 11 ( 2821 1jce_A) ( 2484 1ig8_A) 0.6652 0.5328 7.4094 ( 0 19 28) 0 0.6652 0.5328 12 15 ( 2821 1jce_A) ( 2491 1ih7_A) 0.5832 0.2593 4.5927 ( 0 11 21) 0 0.5832 0.2696 12 27 ( 2821 1jce_A) ( 2619 1iv0_A) 0.5148 0.6238 3.6282 ( 2 13 21) 0 0.5148 0.6238 12 7 ( 2821 1jce_A) ( 2733 1j54_A) 0.5753 0.5753 4.9045 ( 1 12 21) 0 0.6148 0.6148 12 12 ( 2821 1jce_A) ( 2775 1j9a_A) 0.5831 0.4999 5.2696 ( 0 14 21) 0 0.5831 0.5031 12 14 ( 2821 1jce_A) ( 2821 1jce_A) 1.0000 1.0000 0.0000 ( 0 55 66) 0 1.0000 1.0000 12 12 ( 2821 1jce_A) ( 2822 1jce_A) 0.6666 0.5333 3.7961 ( 0 21 28) 0 0.6666 0.5333 12 15 ( 2821 1jce_A) ( 2910 1jj2_M) 0.5000 0.5454 4.0770 ( 0 9 15) 0 0.5000 0.5454 12 11 ( 2821 1jce_A) ( 2954 1jl1_A) 0.5830 0.6992 5.9966 ( 0 10 21) 0 0.5830 0.6992 12 10 ( 2821 1jce_A) ( 3210 1k8k_A) 0.5830 0.4374 5.8099 ( 0 14 21) 0 0.5830 0.4374 12 16 ( 2821 1jce_A) ( 3260 1kcf_A) 0.6626 0.6626 4.3792 ( 1 17 28) 0 0.6626 0.6626 12 12 ( 2821 1jce_A) ( 3286 1kfs_A) 0.5000 0.5000 3.8818 ( 0 8 15) 0 0.5830 0.5830 12 12 ( 2821 1jce_A) ( 3925 1mgt_A) 0.3333 0.6661 5.6907 ( 0 4 6) 0 0.4166 0.8305 12 6 ( 2821 1jce_A) ( 4043 1mus_A) 0.3333 0.1481 5.0009 ( 0 3 6) 0 0.5822 0.2592 12 27 ( 2821 1jce_A) ( 4057 1mwm_A) 0.7490 0.8166 3.9120 ( 1 29 36) 0 0.7490 0.8166 12 11 ( 2821 1jce_A) ( 4058 1mwm_A) 0.6621 0.7203 7.3992 ( 1 18 28) 0 0.6621 0.7203 12 11 ( 2821 1jce_A) ( 4191 1nbw_A) 0.6646 0.4442 3.1119 ( 1 20 28) 0 0.6646 0.4442 12 18 ( 2821 1jce_A) ( 4193 1nbw_A) 0.6638 0.4993 5.2184 ( 1 19 28) 0 0.6638 0.4993 12 16 ( 2821 1jce_A) ( 4281 1nk4_A) 0.5000 0.5000 4.0784 ( 0 10 15) 0 0.5000 0.5000 12 12 ( 2821 1jce_A) ( 4391 1nu0_A) 0.5833 0.8745 4.0903 ( 0 11 21) 0 0.5833 0.8745 12 8 ( 2821 1jce_A) ( 4469 1o13_A) 0.5790 0.8442 3.4952 ( 1 14 21) 0 0.5790 0.8442 12 8 ( 2821 1jce_A) ( 4935 1p90_A) 0.5833 0.6999 3.4942 ( 0 14 21) 0 0.5833 0.6999 12 10 ( 2821 1jce_A) ( 5120 1pv9_A) 0.5833 0.5833 3.2929 ( 0 12 21) 0 0.6633 0.6633 12 12 ( 2821 1jce_A) ( 5243 1q8i_A) 0.5832 0.2500 4.2597 ( 0 10 21) 0 0.5832 0.2500 12 28 ( 2821 1jce_A) ( 5447 1qtm_A) 0.3429 0.3767 8.5796 ( 1 4 10) 0 0.3429 0.4433 12 9 ( 2821 1jce_A) ( 5500 1qz5_A) 0.6506 0.6633 2.7589 ( 6 42 55) 0 0.6506 0.6633 12 11 ( 2821 1jce_A) ( 5501 1qz5_A) 0.6658 0.4443 6.5095 ( 0 16 28) 0 0.6658 0.4443 12 18 ( 2821 1jce_A) ( 5883 1t7p_A) 0.3333 0.3333 7.1450 ( 0 3 6) 0 0.3333 0.3333 12 12 ( 2821 1jce_A) ( 5906 1tgo_A) 0.5831 0.2593 5.1742 ( 0 14 21) 0 0.5831 0.2593 12 27 ( 2821 1jce_A) ( 6064 1uoc_A) 0.5789 0.4110 4.6353 ( 1 14 21) 0 0.5789 0.4110 12 17 ( 2821 1jce_A) ( 6249 1vhx_A) 0.5833 0.6999 3.6606 ( 0 12 21) 0 0.5833 0.6999 12 10 ( 2821 1jce_A) ( 6299 1vk0_A) 0.3333 0.2667 6.5627 ( 0 4 6) 0 0.4885 0.3961 12 15 ( 2821 1jce_A) ( 6323 1vrt_A) 0.5286 0.6423 4.2415 ( 2 14 21) 0 0.5286 0.7498 12 8 -------------------------------------------------------------------------------------------------------------------------