------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2822 1jce_A) ( 247 1az9 ) 0.4666 0.4999 4.8086 ( 0 11 21) 0 0.5179 0.5501 15 14 ( 2822 1jce_A) ( 345 1bco ) 0.4666 0.6360 5.3470 ( 0 12 21) 0 0.4816 0.6360 15 11 ( 2822 1jce_A) ( 463 1bu6_O) 0.5326 0.4442 4.2799 ( 1 20 28) 0 0.5326 0.4442 15 18 ( 2822 1jce_A) ( 464 1bu6_O) 0.5976 0.5475 4.0298 ( 4 31 45) 0 0.5976 0.5475 15 17 ( 2822 1jce_A) ( 471 1bup_A) 0.6632 0.6224 5.3994 ( 2 36 45) 0 0.6632 0.6224 15 16 ( 2822 1jce_A) ( 472 1bup_A) 0.6273 0.6897 4.2352 ( 5 38 55) 0 0.6273 0.6897 15 12 ( 2822 1jce_A) ( 592 1chm_A) 0.2667 0.3333 6.4207 ( 0 4 6) 0 0.3363 0.3775 15 12 ( 2822 1jce_A) ( 703 1cxq_A) 0.5331 0.7982 6.2013 ( 0 21 28) 0 0.5331 0.7982 15 10 ( 2822 1jce_A) ( 713 1cza_N) 0.5329 0.7964 3.2744 ( 1 22 28) 0 0.5329 0.7964 15 10 ( 2822 1jce_A) ( 714 1cza_N) 0.6857 0.7215 8.0951 ( 4 40 55) 0 0.6857 0.7215 15 14 ( 2822 1jce_A) ( 934 1dt9_A) 0.4724 0.5722 4.9938 ( 3 18 28) 0 0.4724 0.7775 15 9 ( 2822 1jce_A) ( 1021 1e3m_A) 0.4552 0.5314 4.4960 ( 2 11 28) 0 0.4552 0.5314 15 9 ( 2822 1jce_A) ( 1033 1e4f_T) 0.5333 0.5713 4.4203 ( 0 23 28) 0 0.5984 0.6406 15 14 ( 2822 1jce_A) ( 1034 1e4f_T) 0.7983 0.9196 2.4193 ( 2 53 66) 0 0.7983 0.9196 15 13 ( 2822 1jce_A) ( 1191 1eke_A) 0.5997 0.6424 5.6160 ( 0 26 36) 0 0.5997 0.6424 15 14 ( 2822 1jce_A) ( 1223 1eo1_A) 0.3184 0.4575 11.5858 ( 1 5 10) 0 0.3184 0.4575 15 8 ( 2822 1jce_A) ( 1289 1ewq_A) 0.4666 0.6998 4.1962 ( 0 11 21) 0 0.4666 0.6998 15 10 ( 2822 1jce_A) ( 1305 1exq_A) 0.2667 0.4443 6.3958 ( 0 5 6) 0 0.2667 0.4443 15 9 ( 2822 1jce_A) ( 1522 1fjg_K) 0.4666 0.9979 4.8697 ( 0 11 21) 0 0.4666 0.9979 15 7 ( 2822 1jce_A) ( 1656 1fxx_A) 0.4666 0.2258 5.4648 ( 0 13 21) 0 0.5329 0.2581 15 31 ( 2822 1jce_A) ( 1778 1g99_A) 0.4666 0.6362 4.4259 ( 0 14 21) 0 0.5332 0.7265 15 11 ( 2822 1jce_A) ( 1779 1g99_A) 0.6625 0.6220 4.7965 ( 2 34 45) 0 0.6625 0.6220 15 16 ( 2822 1jce_A) ( 2218 1hjr_A) 0.5333 0.7994 4.7011 ( 0 15 28) 0 0.5333 0.7994 15 10 ( 2822 1jce_A) ( 2296 1hux_A) 0.5767 0.4901 5.0038 ( 3 28 36) 0 0.5767 0.4901 15 18 ( 2822 1jce_A) ( 2378 1i39_A) 0.2667 0.3077 6.0252 ( 0 4 6) 0 0.3021 0.3139 15 13 ( 2822 1jce_A) ( 2483 1ig8_A) 0.5995 0.8159 4.4582 ( 1 27 36) 0 0.5995 0.8159 15 11 ( 2822 1jce_A) ( 2484 1ig8_A) 0.6658 0.6658 5.9374 ( 1 34 45) 0 0.6658 0.6658 15 15 ( 2822 1jce_A) ( 2491 1ih7_A) 0.4666 0.2593 4.7595 ( 0 14 21) 0 0.4802 0.3228 15 27 ( 2822 1jce_A) ( 2619 1iv0_A) 0.4647 0.9267 4.3776 ( 1 13 21) 0 0.4647 0.9267 15 7 ( 2822 1jce_A) ( 2733 1j54_A) 0.4647 0.5773 5.8390 ( 1 13 21) 0 0.4893 0.5773 15 12 ( 2822 1jce_A) ( 2775 1j9a_A) 0.4651 0.4977 6.7950 ( 1 14 21) 0 0.4651 0.4977 15 14 ( 2822 1jce_A) ( 2821 1jce_A) 0.5333 0.6666 3.7961 ( 0 21 28) 0 0.5333 0.6666 15 12 ( 2822 1jce_A) ( 2822 1jce_A) 1.0000 1.0000 0.0000 ( 0 88 105) 0 1.0000 1.0000 15 15 ( 2822 1jce_A) ( 2910 1jj2_M) 0.2666 0.3635 9.1121 ( 0 3 6) 0 0.2666 0.3635 15 11 ( 2822 1jce_A) ( 2954 1jl1_A) 0.2666 0.3997 9.0238 ( 0 5 6) 0 0.3121 0.3997 15 10 ( 2822 1jce_A) ( 3210 1k8k_A) 0.6872 0.6529 6.4853 ( 4 40 55) 0 0.6872 0.6529 15 16 ( 2822 1jce_A) ( 3260 1kcf_A) 0.5323 0.6634 4.1756 ( 1 18 28) 0 0.5323 0.6634 15 12 ( 2822 1jce_A) ( 3286 1kfs_A) 0.3331 0.4158 11.4893 ( 0 6 10) 0 0.4051 0.4487 15 12 ( 2822 1jce_A) ( 3925 1mgt_A) 0.2666 0.6610 10.3660 ( 0 2 6) 0 0.2666 0.6610 15 6 ( 2822 1jce_A) ( 4043 1mus_A) 0.5320 0.2962 9.4236 ( 0 18 28) 0 0.5326 0.3257 15 27 ( 2822 1jce_A) ( 4057 1mwm_A) 0.5794 0.7369 5.5315 ( 3 29 36) 0 0.5794 0.7369 15 11 ( 2822 1jce_A) ( 4058 1mwm_A) 0.6041 0.7111 4.3478 ( 4 32 45) 0 0.6041 0.7111 15 11 ( 2822 1jce_A) ( 4191 1nbw_A) 0.2667 0.2222 4.9614 ( 0 2 6) 0 0.3995 0.3484 15 18 ( 2822 1jce_A) ( 4193 1nbw_A) 0.6645 0.6351 4.0570 ( 5 44 55) 0 0.7246 0.6926 15 16 ( 2822 1jce_A) ( 4281 1nk4_A) 0.3940 0.4825 3.2907 ( 1 8 15) 0 0.3940 0.4825 15 12 ( 2822 1jce_A) ( 4391 1nu0_A) 0.4665 0.8720 6.2689 ( 0 13 21) 0 0.4665 0.8720 15 8 ( 2822 1jce_A) ( 4469 1o13_A) 0.4667 0.8747 3.5837 ( 0 14 21) 0 0.4667 0.8747 15 8 ( 2822 1jce_A) ( 4935 1p90_A) 0.3437 0.3676 5.3060 ( 4 15 21) 0 0.4051 0.4717 15 10 ( 2822 1jce_A) ( 5120 1pv9_A) 0.3208 0.3441 6.6344 ( 3 11 15) 0 0.5325 0.6642 15 12 ( 2822 1jce_A) ( 5243 1q8i_A) 0.4666 0.2500 5.1855 ( 0 11 21) 0 0.5096 0.2846 15 28 ( 2822 1jce_A) ( 5447 1qtm_A) 0.3184 0.4397 11.4287 ( 1 5 10) 0 0.3898 0.5722 15 9 ( 2822 1jce_A) ( 5500 1qz5_A) 0.5333 0.7271 4.0325 ( 0 20 28) 0 0.5333 0.7271 15 11 ( 2822 1jce_A) ( 5501 1qz5_A) 0.6706 0.6181 5.4215 ( 8 60 78) 0 0.6706 0.6181 15 18 ( 2822 1jce_A) ( 5883 1t7p_A) 0.4655 0.5798 5.3981 ( 1 15 21) 0 0.4655 0.5798 15 12 ( 2822 1jce_A) ( 5906 1tgo_A) 0.4651 0.2592 5.8914 ( 1 14 21) 0 0.4651 0.3092 15 27 ( 2822 1jce_A) ( 6064 1uoc_A) 0.5179 0.4621 6.0335 ( 2 18 28) 0 0.5179 0.4621 15 17 ( 2822 1jce_A) ( 6249 1vhx_A) 0.5324 0.7930 6.3824 ( 1 20 28) 0 0.5324 0.7930 15 10 ( 2822 1jce_A) ( 6299 1vk0_A) 0.4000 0.4000 4.8743 ( 0 7 15) 0 0.4000 0.4000 15 15 ( 2822 1jce_A) ( 6323 1vrt_A) 0.4647 0.8343 4.8258 ( 1 13 21) 0 0.4647 0.8343 15 8 -------------------------------------------------------------------------------------------------------------------------