------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2910 1jj2_M) ( 247 1az9 ) 0.5454 0.4286 3.4199 ( 0 7 15) 0 0.5454 0.4286 11 14 ( 2910 1jj2_M) ( 345 1bco ) 0.5454 0.5454 4.3960 ( 0 7 15) 0 0.5454 0.5454 11 11 ( 2910 1jj2_M) ( 463 1bu6_O) 0.5453 0.3333 5.2657 ( 0 9 15) 0 0.5453 0.3678 11 18 ( 2910 1jj2_M) ( 464 1bu6_O) 0.3636 0.2353 6.8822 ( 0 4 6) 0 0.4377 0.3657 11 17 ( 2910 1jj2_M) ( 471 1bup_A) 0.3636 0.2500 7.6403 ( 0 3 6) 0 0.4361 0.3661 11 16 ( 2910 1jj2_M) ( 472 1bup_A) 0.4545 0.4166 5.6470 ( 0 4 10) 0 0.6195 0.5722 11 12 ( 2910 1jj2_M) ( 592 1chm_A) 0.6360 0.5831 5.3343 ( 0 12 21) 0 0.6360 0.5831 11 12 ( 2910 1jj2_M) ( 703 1cxq_A) 0.5454 0.5999 3.7223 ( 0 9 15) 0 0.5454 0.5999 11 10 ( 2910 1jj2_M) ( 713 1cza_N) 0.4545 0.4999 5.0601 ( 0 6 10) 0 0.4545 0.4999 11 10 ( 2910 1jj2_M) ( 714 1cza_N) 0.3191 0.2696 10.2717 ( 1 4 6) 0 0.4607 0.4201 11 14 ( 2910 1jj2_M) ( 934 1dt9_A) 0.5452 0.6661 5.8424 ( 0 9 15) 0 0.5452 0.6661 11 9 ( 2910 1jj2_M) ( 1021 1e3m_A) 0.3636 0.4444 3.1147 ( 0 2 6) 0 0.5454 0.6664 11 9 ( 2910 1jj2_M) ( 1033 1e4f_T) 0.5438 0.4281 9.8245 ( 0 6 15) 0 0.5449 0.4284 11 14 ( 2910 1jj2_M) ( 1034 1e4f_T) 0.4363 0.3763 5.2170 ( 1 7 10) 0 0.4363 0.3763 11 13 ( 2910 1jj2_M) ( 1191 1eke_A) 0.4434 0.3537 4.5989 ( 1 8 10) 0 0.6360 0.4999 11 14 ( 2910 1jj2_M) ( 1223 1eo1_A) 0.5446 0.7458 8.2789 ( 0 9 15) 0 0.6361 0.8738 11 8 ( 2910 1jj2_M) ( 1289 1ewq_A) 0.4545 0.4999 5.7019 ( 0 5 10) 0 0.6015 0.6470 11 10 ( 2910 1jj2_M) ( 1305 1exq_A) 0.5454 0.6666 3.9028 ( 0 9 15) 0 0.5454 0.6666 11 9 ( 2910 1jj2_M) ( 1522 1fjg_K) 0.5454 0.8568 3.8085 ( 0 7 15) 0 0.5454 0.8568 11 7 ( 2910 1jj2_M) ( 1656 1fxx_A) 0.5453 0.1935 4.9775 ( 0 7 15) 0 0.5453 0.2435 11 31 ( 2910 1jj2_M) ( 1778 1g99_A) 0.5454 0.5454 4.1273 ( 0 9 15) 0 0.6356 0.6356 11 11 ( 2910 1jj2_M) ( 1779 1g99_A) 0.3630 0.2499 12.5005 ( 0 3 6) 0 0.3630 0.2528 11 16 ( 2910 1jj2_M) ( 2218 1hjr_A) 0.3636 0.4000 4.4193 ( 0 5 6) 0 0.5192 0.5598 11 10 ( 2910 1jj2_M) ( 2296 1hux_A) 0.4545 0.2778 4.0989 ( 0 5 10) 0 0.5454 0.3773 11 18 ( 2910 1jj2_M) ( 2378 1i39_A) 0.5454 0.4615 3.8069 ( 0 9 15) 0 0.5454 0.4615 11 13 ( 2910 1jj2_M) ( 2483 1ig8_A) 0.3634 0.3634 9.5626 ( 0 3 6) 0 0.4922 0.4922 11 11 ( 2910 1jj2_M) ( 2484 1ig8_A) 0.4544 0.3333 6.6083 ( 0 6 10) 0 0.4544 0.3433 11 15 ( 2910 1jj2_M) ( 2491 1ih7_A) 0.5454 0.2222 4.6609 ( 0 7 15) 0 0.6314 0.2878 11 27 ( 2910 1jj2_M) ( 2619 1iv0_A) 0.5454 0.8568 3.8150 ( 0 8 15) 0 0.5454 0.8568 11 7 ( 2910 1jj2_M) ( 2733 1j54_A) 0.3636 0.3333 4.0951 ( 0 4 6) 0 0.4611 0.4488 11 12 ( 2910 1jj2_M) ( 2775 1j9a_A) 0.3636 0.2857 4.0453 ( 0 2 6) 0 0.4545 0.3571 11 14 ( 2910 1jj2_M) ( 2821 1jce_A) 0.5454 0.5000 4.0770 ( 0 9 15) 0 0.5454 0.5000 11 12 ( 2910 1jj2_M) ( 2822 1jce_A) 0.3635 0.2666 9.1121 ( 0 3 6) 0 0.3635 0.2666 11 15 ( 2910 1jj2_M) ( 2910 1jj2_M) 1.0000 1.0000 0.0000 ( 0 37 55) 0 1.0000 1.0000 11 11 ( 2910 1jj2_M) ( 2954 1jl1_A) 0.6358 0.6991 6.0539 ( 0 9 21) 0 0.6358 0.6991 11 10 ( 2910 1jj2_M) ( 3210 1k8k_A) 0.3189 0.2412 12.5677 ( 1 4 6) 0 0.7125 0.4976 11 16 ( 2910 1jj2_M) ( 3260 1kcf_A) 0.4545 0.4166 4.4708 ( 0 3 10) 0 0.6122 0.5673 11 12 ( 2910 1jj2_M) ( 3286 1kfs_A) 0.4545 0.4167 3.9351 ( 0 5 10) 0 0.4545 0.4167 11 12 ( 2910 1jj2_M) ( 3925 1mgt_A) 0.3636 0.6665 4.1895 ( 0 3 6) 0 0.4544 0.8305 11 6 ( 2910 1jj2_M) ( 4043 1mus_A) 0.4545 0.1852 4.9288 ( 0 5 10) 0 0.5453 0.2434 11 27 ( 2910 1jj2_M) ( 4057 1mwm_A) 0.5453 0.5453 5.2586 ( 0 10 15) 0 0.5453 0.5453 11 11 ( 2910 1jj2_M) ( 4058 1mwm_A) 0.3634 0.3634 10.3199 ( 0 2 6) 0 0.7265 0.7265 11 11 ( 2910 1jj2_M) ( 4191 1nbw_A) 0.5454 0.3333 3.9689 ( 0 9 15) 0 0.5454 0.3333 11 18 ( 2910 1jj2_M) ( 4193 1nbw_A) 0.5453 0.3750 5.2822 ( 0 10 15) 0 0.5454 0.3750 11 16 ( 2910 1jj2_M) ( 4281 1nk4_A) 0.5193 0.4825 5.1161 ( 1 8 15) 0 0.5193 0.4825 11 12 ( 2910 1jj2_M) ( 4391 1nu0_A) 0.5452 0.7489 5.8435 ( 0 8 15) 0 0.5453 0.7490 11 8 ( 2910 1jj2_M) ( 4469 1o13_A) 0.5445 0.7455 8.4161 ( 0 10 15) 0 0.6362 0.8742 11 8 ( 2910 1jj2_M) ( 4935 1p90_A) 0.6269 0.6851 6.3844 ( 1 13 21) 0 0.7237 0.7942 11 10 ( 2910 1jj2_M) ( 5120 1pv9_A) 0.3636 0.3333 6.2361 ( 0 5 6) 0 0.3636 0.3395 11 12 ( 2910 1jj2_M) ( 5243 1q8i_A) 0.3636 0.1429 2.8180 ( 0 4 6) 0 0.5452 0.2462 11 28 ( 2910 1jj2_M) ( 5447 1qtm_A) 0.3636 0.4444 4.0812 ( 0 2 6) 0 0.5453 0.6661 11 9 ( 2910 1jj2_M) ( 5500 1qz5_A) 0.5454 0.5454 4.3192 ( 0 8 15) 0 0.5454 0.5454 11 11 ( 2910 1jj2_M) ( 5501 1qz5_A) 0.3635 0.2222 9.1577 ( 0 3 6) 0 0.3752 0.3021 11 18 ( 2910 1jj2_M) ( 5883 1t7p_A) 0.3636 0.3333 6.9587 ( 0 2 6) 0 0.5452 0.4998 11 12 ( 2910 1jj2_M) ( 5906 1tgo_A) 0.3636 0.1481 6.0363 ( 0 4 6) 0 0.6519 0.2952 11 27 ( 2910 1jj2_M) ( 6064 1uoc_A) 0.6273 0.4107 4.9699 ( 1 13 21) 0 0.6273 0.4107 11 17 ( 2910 1jj2_M) ( 6249 1vhx_A) 0.5453 0.5998 5.3556 ( 0 9 15) 0 0.5453 0.5998 11 10 ( 2910 1jj2_M) ( 6299 1vk0_A) 0.3636 0.2666 7.5558 ( 0 0 6) 0 0.6359 0.4721 11 15 ( 2910 1jj2_M) ( 6323 1vrt_A) 0.6014 0.7445 6.3349 ( 1 9 21) 0 0.6014 0.7494 11 8 -------------------------------------------------------------------------------------------------------------------------