------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2954 1jl1_A) ( 247 1az9 ) 0.4999 0.3571 5.6027 ( 0 6 10) 0 0.4999 0.3571 10 14 ( 2954 1jl1_A) ( 345 1bco ) 0.7990 0.7267 5.3158 ( 0 16 28) 0 0.7990 0.7267 10 11 ( 2954 1jl1_A) ( 463 1bu6_O) 0.6859 0.3881 4.0340 ( 1 13 21) 0 0.6859 0.3881 10 18 ( 2954 1jl1_A) ( 464 1bu6_O) 0.3999 0.2353 7.2900 ( 0 5 6) 0 0.5081 0.4174 10 17 ( 2954 1jl1_A) ( 471 1bup_A) 0.3998 0.2500 8.7453 ( 0 3 6) 0 0.4529 0.3248 10 16 ( 2954 1jl1_A) ( 472 1bup_A) 0.3999 0.3333 6.9639 ( 0 5 6) 0 0.4991 0.4163 10 12 ( 2954 1jl1_A) ( 592 1chm_A) 0.6993 0.5831 5.7005 ( 0 8 21) 0 0.6993 0.5831 10 12 ( 2954 1jl1_A) ( 703 1cxq_A) 0.7990 0.7990 5.2752 ( 0 17 28) 0 0.7990 0.7990 10 10 ( 2954 1jl1_A) ( 713 1cza_N) 0.5996 0.5996 6.2193 ( 0 10 15) 0 0.6989 0.6989 10 10 ( 2954 1jl1_A) ( 714 1cza_N) 0.3664 0.2784 12.7390 ( 1 5 6) 0 0.6183 0.5190 10 14 ( 2954 1jl1_A) ( 934 1dt9_A) 0.4529 0.4837 7.7194 ( 1 6 10) 0 0.4529 0.4837 10 9 ( 2954 1jl1_A) ( 1021 1e3m_A) 0.4999 0.5553 5.7522 ( 0 3 10) 0 0.4999 0.5553 10 9 ( 2954 1jl1_A) ( 1033 1e4f_T) 0.5996 0.4285 6.2305 ( 0 8 15) 0 0.5996 0.4637 10 14 ( 2954 1jl1_A) ( 1034 1e4f_T) 0.6987 0.5381 6.7058 ( 0 9 21) 0 0.6987 0.5381 10 13 ( 2954 1jl1_A) ( 1191 1eke_A) 0.7992 0.5713 5.1062 ( 0 16 28) 0 0.7992 0.5713 10 14 ( 2954 1jl1_A) ( 1223 1eo1_A) 0.4998 0.6244 6.3100 ( 0 3 10) 0 0.4998 0.6244 10 8 ( 2954 1jl1_A) ( 1289 1ewq_A) 0.3998 0.3998 8.4351 ( 0 4 6) 0 0.3998 0.3998 10 10 ( 2954 1jl1_A) ( 1305 1exq_A) 0.6995 0.7769 5.3187 ( 0 12 21) 0 0.6995 0.7769 10 9 ( 2954 1jl1_A) ( 1522 1fjg_K) 0.6995 0.9972 5.2340 ( 0 9 21) 0 0.6995 0.9972 10 7 ( 2954 1jl1_A) ( 1656 1fxx_A) 0.4998 0.1613 6.0357 ( 0 4 10) 0 0.4998 0.2109 10 31 ( 2954 1jl1_A) ( 1778 1g99_A) 0.4999 0.4545 5.7500 ( 0 5 10) 0 0.6992 0.6359 10 11 ( 2954 1jl1_A) ( 1779 1g99_A) 0.6804 0.4355 5.9558 ( 1 12 21) 0 0.6804 0.4355 10 16 ( 2954 1jl1_A) ( 2218 1hjr_A) 0.5997 0.5997 5.6568 ( 0 7 15) 0 0.5997 0.5997 10 10 ( 2954 1jl1_A) ( 2296 1hux_A) 0.6865 0.3881 8.4634 ( 1 14 21) 0 0.6865 0.3881 10 18 ( 2954 1jl1_A) ( 2378 1i39_A) 0.7942 0.6138 5.0442 ( 1 20 28) 0 0.7942 0.6138 10 13 ( 2954 1jl1_A) ( 2483 1ig8_A) 0.6992 0.6359 5.9148 ( 0 10 21) 0 0.6992 0.6359 10 11 ( 2954 1jl1_A) ( 2484 1ig8_A) 0.6991 0.4665 6.1432 ( 0 12 21) 0 0.6991 0.4665 10 15 ( 2954 1jl1_A) ( 2491 1ih7_A) 0.4992 0.1852 9.1407 ( 0 4 10) 0 0.5040 0.2376 10 27 ( 2954 1jl1_A) ( 2619 1iv0_A) 0.6996 0.9974 5.1408 ( 0 11 21) 0 0.6996 0.9974 10 7 ( 2954 1jl1_A) ( 2733 1j54_A) 0.4998 0.4166 6.6958 ( 0 4 10) 0 0.4998 0.4166 10 12 ( 2954 1jl1_A) ( 2775 1j9a_A) 0.3999 0.2857 6.0136 ( 0 3 6) 0 0.3999 0.2857 10 14 ( 2954 1jl1_A) ( 2821 1jce_A) 0.6992 0.5830 5.9966 ( 0 10 21) 0 0.6992 0.5830 10 12 ( 2954 1jl1_A) ( 2822 1jce_A) 0.6990 0.4665 6.2542 ( 0 9 21) 0 0.6990 0.4665 10 15 ( 2954 1jl1_A) ( 2910 1jj2_M) 0.6991 0.6358 6.0539 ( 0 9 21) 0 0.6991 0.6358 10 11 ( 2954 1jl1_A) ( 2954 1jl1_A) 1.0000 1.0000 0.0000 ( 0 35 45) 0 1.0000 1.0000 10 10 ( 2954 1jl1_A) ( 3210 1k8k_A) 0.3998 0.2500 8.3523 ( 0 3 6) 0 0.5975 0.3748 10 16 ( 2954 1jl1_A) ( 3260 1kcf_A) 0.5996 0.4999 5.9164 ( 0 6 15) 0 0.5996 0.4999 10 12 ( 2954 1jl1_A) ( 3286 1kfs_A) 0.3997 0.3332 9.4481 ( 0 5 6) 0 0.3997 0.3332 10 12 ( 2954 1jl1_A) ( 3925 1mgt_A) 0.4999 0.8316 5.7869 ( 0 5 10) 0 0.4999 0.8316 10 6 ( 2954 1jl1_A) ( 4043 1mus_A) 0.7991 0.2963 5.1521 ( 0 15 28) 0 0.7991 0.2963 10 27 ( 2954 1jl1_A) ( 4057 1mwm_A) 0.4992 0.4541 9.0190 ( 0 6 10) 0 0.6996 0.6361 10 11 ( 2954 1jl1_A) ( 4058 1mwm_A) 0.3663 0.3413 13.3339 ( 1 5 6) 0 0.3663 0.3413 10 11 ( 2954 1jl1_A) ( 4191 1nbw_A) 0.6996 0.3889 5.1388 ( 0 12 21) 0 0.6996 0.3889 10 18 ( 2954 1jl1_A) ( 4193 1nbw_A) 0.3996 0.2500 10.2183 ( 0 2 6) 0 0.6871 0.4817 10 16 ( 2954 1jl1_A) ( 4281 1nk4_A) 0.3999 0.3333 7.5345 ( 0 5 6) 0 0.3999 0.3333 10 12 ( 2954 1jl1_A) ( 4391 1nu0_A) 0.3985 0.4956 13.9192 ( 0 3 6) 0 0.3998 0.4993 10 8 ( 2954 1jl1_A) ( 4469 1o13_A) 0.5964 0.7391 10.5711 ( 0 7 15) 0 0.5964 0.7391 10 8 ( 2954 1jl1_A) ( 4935 1p90_A) 0.3996 0.3996 10.2555 ( 0 3 6) 0 0.3996 0.3996 10 10 ( 2954 1jl1_A) ( 5120 1pv9_A) 0.6995 0.5831 5.4121 ( 0 8 21) 0 0.6995 0.5831 10 12 ( 2954 1jl1_A) ( 5243 1q8i_A) 0.4000 0.1429 5.2378 ( 0 4 6) 0 0.4997 0.2295 10 28 ( 2954 1jl1_A) ( 5447 1qtm_A) 0.3669 0.3935 8.8236 ( 1 5 6) 0 0.3669 0.3935 10 9 ( 2954 1jl1_A) ( 5500 1qz5_A) 0.4989 0.4539 9.7336 ( 0 7 10) 0 0.6991 0.6358 10 11 ( 2954 1jl1_A) ( 5501 1qz5_A) 0.5383 0.3292 6.6657 ( 1 7 15) 0 0.5383 0.3292 10 18 ( 2954 1jl1_A) ( 5883 1t7p_A) 0.4998 0.4166 6.5824 ( 0 7 10) 0 0.4998 0.4166 10 12 ( 2954 1jl1_A) ( 5906 1tgo_A) 0.4000 0.1481 5.7715 ( 0 4 6) 0 0.4000 0.2259 10 27 ( 2954 1jl1_A) ( 6064 1uoc_A) 0.4202 0.2859 8.0408 ( 1 5 10) 0 0.4202 0.3544 10 17 ( 2954 1jl1_A) ( 6249 1vhx_A) 0.3996 0.3996 10.3635 ( 0 3 6) 0 0.3996 0.3996 10 10 ( 2954 1jl1_A) ( 6299 1vk0_A) 0.3995 0.2666 10.5285 ( 0 3 6) 0 0.3997 0.2666 10 15 ( 2954 1jl1_A) ( 6323 1vrt_A) 0.7899 0.9705 4.7242 ( 1 17 28) 0 0.7899 0.9705 10 8 -------------------------------------------------------------------------------------------------------------------------