------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3286 1kfs_A) ( 247 1az9 ) 0.4157 0.3567 11.8096 ( 0 8 10) 0 0.5449 0.5027 12 14 ( 3286 1kfs_A) ( 345 1bco ) 0.4997 0.5450 6.9364 ( 0 8 15) 0 0.5476 0.5843 12 11 ( 3286 1kfs_A) ( 463 1bu6_O) 0.4165 0.2778 7.2886 ( 0 8 10) 0 0.5830 0.4248 12 18 ( 3286 1kfs_A) ( 464 1bu6_O) 0.3331 0.2353 10.4143 ( 0 6 6) 0 0.3922 0.3727 12 17 ( 3286 1kfs_A) ( 471 1bup_A) 0.3333 0.2500 7.3682 ( 0 2 6) 0 0.3479 0.3275 12 16 ( 3286 1kfs_A) ( 472 1bup_A) 0.3326 0.3326 14.7239 ( 0 3 6) 0 0.3326 0.3326 12 12 ( 3286 1kfs_A) ( 592 1chm_A) 0.6312 0.6312 4.8233 ( 2 19 28) 0 0.6312 0.6312 12 12 ( 3286 1kfs_A) ( 703 1cxq_A) 0.4996 0.5991 7.3754 ( 0 9 15) 0 0.4996 0.5991 12 10 ( 3286 1kfs_A) ( 713 1cza_N) 0.5832 0.6996 4.8646 ( 0 14 21) 0 0.5832 0.6996 12 10 ( 3286 1kfs_A) ( 714 1cza_N) 0.2644 0.2459 8.5678 ( 1 3 6) 0 0.2949 0.2909 12 14 ( 3286 1kfs_A) ( 934 1dt9_A) 0.4166 0.5554 5.2262 ( 0 6 10) 0 0.4166 0.5554 12 9 ( 3286 1kfs_A) ( 1021 1e3m_A) 0.6555 0.8455 4.2937 ( 1 13 28) 0 0.6659 0.8455 12 9 ( 3286 1kfs_A) ( 1033 1e4f_T) 0.3331 0.2856 10.6532 ( 0 5 6) 0 0.4389 0.3962 12 14 ( 3286 1kfs_A) ( 1034 1e4f_T) 0.5833 0.5384 3.9548 ( 0 14 21) 0 0.5833 0.5384 12 13 ( 3286 1kfs_A) ( 1191 1eke_A) 0.3333 0.2857 6.2994 ( 0 3 6) 0 0.3333 0.3118 12 14 ( 3286 1kfs_A) ( 1223 1eo1_A) 0.4999 0.7496 4.5458 ( 0 10 15) 0 0.4999 0.7496 12 8 ( 3286 1kfs_A) ( 1289 1ewq_A) 0.6666 0.7997 3.7996 ( 0 15 28) 0 0.6666 0.7997 12 10 ( 3286 1kfs_A) ( 1305 1exq_A) 0.4998 0.6658 6.4073 ( 0 9 15) 0 0.4998 0.6658 12 9 ( 3286 1kfs_A) ( 1522 1fjg_K) 0.1940 0.1993 5.9463 ( 1 2 6) 0 0.4999 0.8554 12 7 ( 3286 1kfs_A) ( 1656 1fxx_A) 0.8215 0.3225 3.5955 ( 2 34 45) 0 0.8711 0.3544 12 31 ( 3286 1kfs_A) ( 1778 1g99_A) 0.5832 0.6361 5.0116 ( 0 12 21) 0 0.5832 0.6361 12 11 ( 3286 1kfs_A) ( 1779 1g99_A) 0.3331 0.2500 10.6110 ( 0 3 6) 0 0.7242 0.5560 12 16 ( 3286 1kfs_A) ( 2218 1hjr_A) 0.7266 0.8461 5.7873 ( 2 25 36) 0 0.7266 0.8461 12 10 ( 3286 1kfs_A) ( 2296 1hux_A) 0.4167 0.2778 4.2580 ( 0 6 10) 0 0.5000 0.3758 12 18 ( 3286 1kfs_A) ( 2378 1i39_A) 0.4999 0.4615 4.7663 ( 0 9 15) 0 0.4999 0.4615 12 13 ( 3286 1kfs_A) ( 2483 1ig8_A) 0.5832 0.6362 4.7928 ( 0 14 21) 0 0.5832 0.6362 12 11 ( 3286 1kfs_A) ( 2484 1ig8_A) 0.3186 0.2615 8.0280 ( 1 5 6) 0 0.3186 0.2615 12 15 ( 3286 1kfs_A) ( 2491 1ih7_A) 0.8020 0.4046 2.7564 ( 4 40 55) 0 0.8852 0.4418 12 27 ( 3286 1kfs_A) ( 2619 1iv0_A) 0.4167 0.7142 3.2584 ( 0 5 10) 0 0.4167 0.7142 12 7 ( 3286 1kfs_A) ( 2733 1j54_A) 0.7075 0.7075 3.1428 ( 4 34 45) 0 0.8215 0.8215 12 12 ( 3286 1kfs_A) ( 2775 1j9a_A) 0.6796 0.6067 3.9340 ( 3 27 36) 0 0.8317 0.7135 12 14 ( 3286 1kfs_A) ( 2821 1jce_A) 0.5000 0.5000 3.8818 ( 0 8 15) 0 0.5830 0.5830 12 12 ( 3286 1kfs_A) ( 2822 1jce_A) 0.4158 0.3331 11.4893 ( 0 6 10) 0 0.4487 0.4051 12 15 ( 3286 1kfs_A) ( 2910 1jj2_M) 0.4167 0.4545 3.9351 ( 0 5 10) 0 0.4167 0.4545 12 11 ( 3286 1kfs_A) ( 2954 1jl1_A) 0.3332 0.3997 9.4481 ( 0 5 6) 0 0.3332 0.3997 12 10 ( 3286 1kfs_A) ( 3210 1k8k_A) 0.3333 0.2500 7.4139 ( 0 1 6) 0 0.3333 0.2500 12 16 ( 3286 1kfs_A) ( 3260 1kcf_A) 0.7185 0.7185 5.9646 ( 2 23 36) 0 0.7185 0.7185 12 12 ( 3286 1kfs_A) ( 3286 1kfs_A) 1.0000 1.0000 0.0000 ( 0 53 66) 0 1.0000 1.0000 12 12 ( 3286 1kfs_A) ( 3925 1mgt_A) 0.0998 0.0999 6.3493 ( 2 2 6) 0 0.0998 0.0999 12 6 ( 3286 1kfs_A) ( 4043 1mus_A) 0.3333 0.1481 7.1237 ( 0 4 6) 0 0.5824 0.2592 12 27 ( 3286 1kfs_A) ( 4057 1mwm_A) 0.5789 0.6295 5.1045 ( 1 14 21) 0 0.5789 0.6295 12 11 ( 3286 1kfs_A) ( 4058 1mwm_A) 0.3332 0.3635 9.1359 ( 0 0 6) 0 0.5774 0.6273 12 11 ( 3286 1kfs_A) ( 4191 1nbw_A) 0.3021 0.2172 5.8076 ( 1 4 6) 0 0.4166 0.2778 12 18 ( 3286 1kfs_A) ( 4193 1nbw_A) 0.3332 0.2500 9.3913 ( 0 4 6) 0 0.3430 0.2887 12 16 ( 3286 1kfs_A) ( 4281 1nk4_A) 0.8787 0.8787 2.4555 ( 3 42 55) 0 0.8787 0.8787 12 12 ( 3286 1kfs_A) ( 4391 1nu0_A) 0.6629 0.9731 6.0083 ( 1 18 28) 0 0.6629 0.9731 12 8 ( 3286 1kfs_A) ( 4469 1o13_A) 0.5000 0.7499 3.5615 ( 0 11 15) 0 0.5832 0.8738 12 8 ( 3286 1kfs_A) ( 4935 1p90_A) 0.3185 0.3669 9.3325 ( 1 5 6) 0 0.5831 0.6994 12 10 ( 3286 1kfs_A) ( 5120 1pv9_A) 0.6241 0.6241 4.2542 ( 2 18 28) 0 0.6241 0.6241 12 12 ( 3286 1kfs_A) ( 5243 1q8i_A) 0.8714 0.3921 3.1500 ( 3 40 55) 0 0.8714 0.4199 12 28 ( 3286 1kfs_A) ( 5447 1qtm_A) 0.6641 0.8784 3.0646 ( 1 19 28) 0 0.6641 0.8784 12 9 ( 3286 1kfs_A) ( 5500 1qz5_A) 0.3186 0.3419 5.1170 ( 1 5 6) 0 0.3186 0.3419 12 11 ( 3286 1kfs_A) ( 5501 1qz5_A) 0.4166 0.2778 4.5599 ( 0 6 10) 0 0.4166 0.2942 12 18 ( 3286 1kfs_A) ( 5883 1t7p_A) 0.7907 0.7907 3.5594 ( 3 36 45) 0 0.7907 0.7907 12 12 ( 3286 1kfs_A) ( 5906 1tgo_A) 0.7135 0.4008 3.3351 ( 5 40 55) 0 0.8711 0.4065 12 27 ( 3286 1kfs_A) ( 6064 1uoc_A) 0.8243 0.6274 2.9460 ( 4 43 55) 0 0.8248 0.6274 12 17 ( 3286 1kfs_A) ( 6249 1vhx_A) 0.6239 0.7080 5.5585 ( 2 18 28) 0 0.6239 0.7080 12 10 ( 3286 1kfs_A) ( 6299 1vk0_A) 0.8020 0.6882 3.0262 ( 4 40 55) 0 0.8020 0.6882 12 15 ( 3286 1kfs_A) ( 6323 1vrt_A) 0.4166 0.6249 4.4299 ( 0 5 10) 0 0.4166 0.6249 12 8 -------------------------------------------------------------------------------------------------------------------------