------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 345 1bco ) ( 247 1az9 ) 0.3636 0.2857 4.7882 ( 0 3 6) 0 0.6349 0.4996 11 14 ( 345 1bco ) ( 345 1bco ) 1.0000 1.0000 0.0000 ( 0 42 55) 0 1.0000 1.0000 11 11 ( 345 1bco ) ( 463 1bu6_O) 0.3636 0.2222 5.1181 ( 0 3 6) 0 0.3636 0.2222 11 18 ( 345 1bco ) ( 464 1bu6_O) 0.6358 0.4117 6.2150 ( 0 11 21) 0 0.6358 0.4117 11 17 ( 345 1bco ) ( 471 1bup_A) 0.5453 0.3750 5.5410 ( 0 9 15) 0 0.5453 0.3750 11 16 ( 345 1bco ) ( 472 1bup_A) 0.3634 0.3332 10.2109 ( 0 0 6) 0 0.4545 0.4166 11 12 ( 345 1bco ) ( 592 1chm_A) 0.4545 0.4166 4.5985 ( 0 6 10) 0 0.7269 0.6664 11 12 ( 345 1bco ) ( 703 1cxq_A) 0.8181 0.8999 2.4136 ( 0 26 36) 0 0.8181 0.8999 11 10 ( 345 1bco ) ( 713 1cza_N) 0.6355 0.6987 6.7813 ( 0 13 21) 0 0.6355 0.6987 11 10 ( 345 1bco ) ( 714 1cza_N) 0.3636 0.2857 7.2366 ( 0 2 6) 0 0.3636 0.2857 11 14 ( 345 1bco ) ( 934 1dt9_A) 0.5453 0.6662 5.4775 ( 0 8 15) 0 0.5453 0.6662 11 9 ( 345 1bco ) ( 1021 1e3m_A) 0.7031 0.8287 6.9643 ( 1 12 28) 0 0.7031 0.8287 11 9 ( 345 1bco ) ( 1033 1e4f_T) 0.4538 0.3569 9.9674 ( 0 7 10) 0 0.4545 0.3571 11 14 ( 345 1bco ) ( 1034 1e4f_T) 0.6359 0.5383 5.8761 ( 0 12 21) 0 0.6359 0.5383 11 13 ( 345 1bco ) ( 1191 1eke_A) 0.7268 0.5713 4.9382 ( 0 17 28) 0 0.8122 0.6411 11 14 ( 345 1bco ) ( 1223 1eo1_A) 0.6362 0.8740 4.7938 ( 0 9 21) 0 0.6362 0.8740 11 8 ( 345 1bco ) ( 1289 1ewq_A) 0.7254 0.7971 6.9815 ( 0 13 28) 0 0.7254 0.7971 11 10 ( 345 1bco ) ( 1305 1exq_A) 0.7888 0.9275 2.7692 ( 2 26 36) 0 0.7888 0.9275 11 9 ( 345 1bco ) ( 1522 1fjg_K) 0.6361 0.9974 5.1341 ( 0 8 21) 0 0.6361 0.9974 11 7 ( 345 1bco ) ( 1656 1fxx_A) 0.3636 0.1290 6.1279 ( 0 1 6) 0 0.5332 0.1988 11 31 ( 345 1bco ) ( 1778 1g99_A) 0.4545 0.4545 4.8053 ( 0 6 10) 0 0.6360 0.6360 11 11 ( 345 1bco ) ( 1779 1g99_A) 0.4531 0.3123 11.8354 ( 0 5 10) 0 0.5364 0.3736 11 16 ( 345 1bco ) ( 2218 1hjr_A) 0.6355 0.6986 6.8074 ( 0 9 21) 0 0.6355 0.6986 11 10 ( 345 1bco ) ( 2296 1hux_A) 0.5439 0.3332 9.6231 ( 0 9 15) 0 0.5439 0.3332 11 18 ( 345 1bco ) ( 2378 1i39_A) 0.3636 0.3077 7.5476 ( 0 2 6) 0 0.8128 0.6899 11 13 ( 345 1bco ) ( 2483 1ig8_A) 0.6360 0.6360 5.6662 ( 0 11 21) 0 0.6360 0.6360 11 11 ( 345 1bco ) ( 2484 1ig8_A) 0.5449 0.3999 7.3413 ( 0 7 15) 0 0.5449 0.3999 11 15 ( 345 1bco ) ( 2491 1ih7_A) 0.5454 0.2222 3.5231 ( 0 7 15) 0 0.5454 0.2575 11 27 ( 345 1bco ) ( 2619 1iv0_A) 0.6126 0.8407 3.4094 ( 1 10 21) 0 0.6126 0.8570 11 7 ( 345 1bco ) ( 2733 1j54_A) 0.6353 0.5827 7.1455 ( 0 10 21) 0 0.6353 0.5827 11 12 ( 345 1bco ) ( 2775 1j9a_A) 0.4544 0.3571 6.9293 ( 0 3 10) 0 0.4544 0.3571 11 14 ( 345 1bco ) ( 2821 1jce_A) 0.6361 0.5832 4.8630 ( 0 12 21) 0 0.6361 0.5832 11 12 ( 345 1bco ) ( 2822 1jce_A) 0.6360 0.4666 5.3470 ( 0 12 21) 0 0.6360 0.4816 11 15 ( 345 1bco ) ( 2910 1jj2_M) 0.5454 0.5454 4.3960 ( 0 7 15) 0 0.5454 0.5454 11 11 ( 345 1bco ) ( 2954 1jl1_A) 0.7267 0.7990 5.3158 ( 0 16 28) 0 0.7267 0.7990 11 10 ( 345 1bco ) ( 3210 1k8k_A) 0.3630 0.2499 12.5008 ( 0 4 6) 0 0.3630 0.2499 11 16 ( 345 1bco ) ( 3260 1kcf_A) 0.4542 0.4165 8.0274 ( 0 5 10) 0 0.4545 0.4166 11 12 ( 345 1bco ) ( 3286 1kfs_A) 0.5450 0.4997 6.9364 ( 0 8 15) 0 0.5843 0.5476 11 12 ( 345 1bco ) ( 3925 1mgt_A) 0.2630 0.2663 6.6712 ( 3 8 15) 0 0.3635 0.6636 11 6 ( 345 1bco ) ( 4043 1mus_A) 0.3633 0.1481 10.4650 ( 0 5 6) 0 0.7730 0.3681 11 27 ( 345 1bco ) ( 4057 1mwm_A) 0.6358 0.6358 6.0107 ( 0 12 21) 0 0.6358 0.6358 11 11 ( 345 1bco ) ( 4058 1mwm_A) 0.5447 0.5447 7.8828 ( 0 7 15) 0 0.5447 0.5447 11 11 ( 345 1bco ) ( 4191 1nbw_A) 0.6362 0.3889 4.1160 ( 0 11 21) 0 0.6362 0.3889 11 18 ( 345 1bco ) ( 4193 1nbw_A) 0.6358 0.4374 6.2218 ( 0 12 21) 0 0.6358 0.4374 11 16 ( 345 1bco ) ( 4281 1nk4_A) 0.4543 0.4165 7.3259 ( 0 4 10) 0 0.4785 0.4529 11 12 ( 345 1bco ) ( 4391 1nu0_A) 0.5452 0.7486 6.2580 ( 0 8 15) 0 0.5452 0.7486 11 8 ( 345 1bco ) ( 4469 1o13_A) 0.6242 0.8216 4.4625 ( 1 12 21) 0 0.6242 0.8216 11 8 ( 345 1bco ) ( 4935 1p90_A) 0.6360 0.6995 5.3531 ( 0 12 21) 0 0.6360 0.6995 11 10 ( 345 1bco ) ( 5120 1pv9_A) 0.6363 0.5833 3.8020 ( 0 10 21) 0 0.6363 0.5833 11 12 ( 345 1bco ) ( 5243 1q8i_A) 0.5453 0.2143 5.6443 ( 0 6 15) 0 0.5453 0.2486 11 28 ( 345 1bco ) ( 5447 1qtm_A) 0.4540 0.5540 9.3305 ( 0 4 10) 0 0.4540 0.5540 11 9 ( 345 1bco ) ( 5500 1qz5_A) 0.6362 0.6362 4.5539 ( 0 10 21) 0 0.6362 0.6362 11 11 ( 345 1bco ) ( 5501 1qz5_A) 0.3988 0.2715 9.5086 ( 1 5 10) 0 0.3988 0.2715 11 18 ( 345 1bco ) ( 5883 1t7p_A) 0.3635 0.3333 8.2633 ( 0 3 6) 0 0.7147 0.6584 11 12 ( 345 1bco ) ( 5906 1tgo_A) 0.5445 0.2222 8.5194 ( 0 9 15) 0 0.5445 0.2259 11 27 ( 345 1bco ) ( 6064 1uoc_A) 0.4541 0.2941 8.7221 ( 0 5 10) 0 0.6121 0.4492 11 17 ( 345 1bco ) ( 6249 1vhx_A) 0.8068 0.8820 8.8204 ( 1 23 36) 0 0.8068 0.8820 11 10 ( 345 1bco ) ( 6299 1vk0_A) 0.3636 0.2667 6.5484 ( 0 1 6) 0 0.4920 0.4203 11 15 ( 345 1bco ) ( 6323 1vrt_A) 0.6362 0.8741 4.6395 ( 0 9 21) 0 0.6362 0.8741 11 8 -------------------------------------------------------------------------------------------------------------------------