------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4058 1mwm_A) ( 247 1az9 ) 0.3636 0.2857 6.3027 ( 0 2 6) 0 0.6640 0.5498 11 14 ( 4058 1mwm_A) ( 345 1bco ) 0.5447 0.5447 7.8828 ( 0 7 15) 0 0.5447 0.5447 11 11 ( 4058 1mwm_A) ( 463 1bu6_O) 0.5405 0.3773 5.8848 ( 2 13 21) 0 0.5405 0.3773 11 18 ( 4058 1mwm_A) ( 464 1bu6_O) 0.8165 0.5752 5.4346 ( 3 32 45) 0 0.8165 0.5752 11 17 ( 4058 1mwm_A) ( 471 1bup_A) 0.6526 0.4859 6.2988 ( 2 17 28) 0 0.6526 0.4859 11 16 ( 4058 1mwm_A) ( 472 1bup_A) 0.7776 0.7228 6.0795 ( 2 24 36) 0 0.7776 0.7228 11 12 ( 4058 1mwm_A) ( 592 1chm_A) 0.7260 0.6658 6.4237 ( 0 19 28) 0 0.7260 0.6658 11 12 ( 4058 1mwm_A) ( 703 1cxq_A) 0.3636 0.3999 7.6189 ( 0 2 6) 0 0.4233 0.4531 11 10 ( 4058 1mwm_A) ( 713 1cza_N) 0.4542 0.4994 8.3626 ( 0 6 10) 0 0.4542 0.4994 11 10 ( 4058 1mwm_A) ( 714 1cza_N) 0.8133 0.6414 5.2065 ( 1 22 36) 0 0.8133 0.6414 11 14 ( 4058 1mwm_A) ( 934 1dt9_A) 0.3636 0.4444 6.0552 ( 0 3 6) 0 0.6527 0.7766 11 9 ( 4058 1mwm_A) ( 1021 1e3m_A) 0.3636 0.4443 6.2229 ( 0 2 6) 0 0.3636 0.4443 11 9 ( 4058 1mwm_A) ( 1033 1e4f_T) 0.3635 0.2857 8.6147 ( 0 3 6) 0 0.3635 0.2857 11 14 ( 4058 1mwm_A) ( 1034 1e4f_T) 0.7887 0.6789 3.6754 ( 2 26 36) 0 0.7887 0.6789 11 13 ( 4058 1mwm_A) ( 1191 1eke_A) 0.3636 0.2857 7.6532 ( 0 2 6) 0 0.3636 0.2965 11 14 ( 4058 1mwm_A) ( 1223 1eo1_A) 0.3190 0.3666 11.9726 ( 1 4 6) 0 0.3190 0.3666 11 8 ( 4058 1mwm_A) ( 1289 1ewq_A) 0.2725 0.2798 14.2893 ( 1 3 6) 0 0.3365 0.3405 11 10 ( 4058 1mwm_A) ( 1305 1exq_A) 0.4541 0.5545 8.5832 ( 0 4 10) 0 0.4541 0.5545 11 9 ( 4058 1mwm_A) ( 1522 1fjg_K) 0.3636 0.5706 7.6199 ( 0 2 6) 0 0.3636 0.5708 11 7 ( 4058 1mwm_A) ( 1656 1fxx_A) 0.4362 0.1612 7.2888 ( 1 7 10) 0 0.7201 0.2882 11 31 ( 4058 1mwm_A) ( 1778 1g99_A) 0.3634 0.3634 9.5973 ( 0 3 6) 0 0.6812 0.6812 11 11 ( 4058 1mwm_A) ( 1779 1g99_A) 0.9057 0.6245 6.1557 ( 0 32 45) 0 0.9057 0.6245 11 16 ( 4058 1mwm_A) ( 2218 1hjr_A) 0.4544 0.4998 6.3903 ( 0 7 10) 0 0.7267 0.7991 11 10 ( 4058 1mwm_A) ( 2296 1hux_A) 0.8901 0.5539 4.9256 ( 2 34 45) 0 0.8901 0.5539 11 18 ( 4058 1mwm_A) ( 2378 1i39_A) 0.3635 0.3076 7.9774 ( 0 2 6) 0 0.3636 0.3077 11 13 ( 4058 1mwm_A) ( 2483 1ig8_A) 0.6241 0.6241 4.9673 ( 1 12 21) 0 0.6241 0.6241 11 11 ( 4058 1mwm_A) ( 2484 1ig8_A) 0.3635 0.2666 9.0751 ( 0 3 6) 0 0.3635 0.2868 11 15 ( 4058 1mwm_A) ( 2491 1ih7_A) 0.4545 0.1852 3.2066 ( 0 4 10) 0 0.7232 0.2963 11 27 ( 4058 1mwm_A) ( 2619 1iv0_A) 0.4544 0.7127 6.9105 ( 0 4 10) 0 0.4544 0.7127 11 7 ( 4058 1mwm_A) ( 2733 1j54_A) 0.3635 0.3333 8.4281 ( 0 3 6) 0 0.6632 0.6225 11 12 ( 4058 1mwm_A) ( 2775 1j9a_A) 0.3636 0.2857 6.1017 ( 0 3 6) 0 0.6352 0.4996 11 14 ( 4058 1mwm_A) ( 2821 1jce_A) 0.7203 0.6621 7.3992 ( 1 18 28) 0 0.7203 0.6621 11 12 ( 4058 1mwm_A) ( 2822 1jce_A) 0.7111 0.6041 4.3478 ( 4 32 45) 0 0.7111 0.6041 11 15 ( 4058 1mwm_A) ( 2910 1jj2_M) 0.3634 0.3634 10.3199 ( 0 2 6) 0 0.7265 0.7265 11 11 ( 4058 1mwm_A) ( 2954 1jl1_A) 0.3413 0.3663 13.3339 ( 1 5 6) 0 0.3413 0.3663 11 10 ( 4058 1mwm_A) ( 3210 1k8k_A) 0.6931 0.5363 6.5767 ( 3 25 36) 0 0.6931 0.5363 11 16 ( 4058 1mwm_A) ( 3260 1kcf_A) 0.4545 0.4166 5.9816 ( 0 5 10) 0 0.7265 0.6662 11 12 ( 4058 1mwm_A) ( 3286 1kfs_A) 0.3635 0.3332 9.1359 ( 0 0 6) 0 0.6273 0.5774 11 12 ( 4058 1mwm_A) ( 3925 1mgt_A) 0.3634 0.6616 10.0768 ( 0 3 6) 0 0.3986 0.6616 11 6 ( 4058 1mwm_A) ( 4043 1mus_A) 0.3635 0.1481 8.0209 ( 0 3 6) 0 0.5696 0.2583 11 27 ( 4058 1mwm_A) ( 4057 1mwm_A) 0.5730 0.5730 6.0291 ( 2 15 21) 0 0.5730 0.5730 11 11 ( 4058 1mwm_A) ( 4058 1mwm_A) 1.0000 1.0000 0.0000 ( 0 42 55) 0 1.0000 1.0000 11 11 ( 4058 1mwm_A) ( 4191 1nbw_A) 0.3634 0.2222 10.4033 ( 0 3 6) 0 0.7233 0.4441 11 18 ( 4058 1mwm_A) ( 4193 1nbw_A) 0.5808 0.4958 4.4202 ( 4 25 36) 0 0.7788 0.5559 11 16 ( 4058 1mwm_A) ( 4281 1nk4_A) 0.3634 0.3332 10.3457 ( 0 4 6) 0 0.6241 0.5753 11 12 ( 4058 1mwm_A) ( 4391 1nu0_A) 0.4543 0.6238 7.5214 ( 0 7 10) 0 0.6350 0.8685 11 8 ( 4058 1mwm_A) ( 4469 1o13_A) 0.3190 0.3665 12.3052 ( 1 4 6) 0 0.3190 0.3665 11 8 ( 4058 1mwm_A) ( 4935 1p90_A) 0.3633 0.3995 10.4504 ( 0 3 6) 0 0.7266 0.7989 11 10 ( 4058 1mwm_A) ( 5120 1pv9_A) 0.7258 0.6657 6.6134 ( 0 18 28) 0 0.7258 0.6657 11 12 ( 4058 1mwm_A) ( 5243 1q8i_A) 0.4543 0.1786 7.5484 ( 0 3 10) 0 0.7180 0.2856 11 28 ( 4058 1mwm_A) ( 5447 1qtm_A) nil ( 4058 1mwm_A) ( 5500 1qz5_A) 0.6308 0.6308 5.9071 ( 1 15 21) 0 0.6308 0.6308 11 11 ( 4058 1mwm_A) ( 5501 1qz5_A) 0.7882 0.4972 4.9145 ( 2 26 36) 0 0.7882 0.4972 11 18 ( 4058 1mwm_A) ( 5883 1t7p_A) 0.3636 0.3333 5.6203 ( 0 4 6) 0 0.4545 0.4279 11 12 ( 4058 1mwm_A) ( 5906 1tgo_A) 0.4545 0.1852 5.3591 ( 0 7 10) 0 0.6512 0.2952 11 27 ( 4058 1mwm_A) ( 6064 1uoc_A) 0.4609 0.3745 8.0617 ( 3 15 21) 0 0.6360 0.4828 11 17 ( 4058 1mwm_A) ( 6249 1vhx_A) 0.3636 0.4000 3.8025 ( 0 2 6) 0 0.6353 0.6983 11 10 ( 4058 1mwm_A) ( 6299 1vk0_A) 0.3634 0.2666 9.5984 ( 0 3 6) 0 0.3635 0.2666 11 15 ( 4058 1mwm_A) ( 6323 1vrt_A) 0.5040 0.6072 6.7447 ( 1 7 15) 1 0.5040 0.6072 11 8 -------------------------------------------------------------------------------------------------------------------------