------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4191 1nbw_A) ( 247 1az9 ) 0.2222 0.2857 5.8036 ( 0 4 6) 0 0.4438 0.5690 18 14 ( 4191 1nbw_A) ( 345 1bco ) 0.3889 0.6362 4.1160 ( 0 11 21) 0 0.3889 0.6362 18 11 ( 4191 1nbw_A) ( 463 1bu6_O) 0.4440 0.4440 3.3492 ( 1 18 28) 0 0.4440 0.4440 18 18 ( 4191 1nbw_A) ( 464 1bu6_O) 0.4380 0.4621 4.7323 ( 2 18 28) 0 0.4380 0.4621 18 17 ( 4191 1nbw_A) ( 471 1bup_A) 0.4441 0.4995 4.7525 ( 1 20 28) 0 0.4441 0.4995 18 16 ( 4191 1nbw_A) ( 472 1bup_A) 0.2222 0.3332 8.8334 ( 0 4 6) 0 0.4835 0.5642 18 12 ( 4191 1nbw_A) ( 592 1chm_A) 0.2778 0.4166 6.1279 ( 0 0 10) 0 0.4440 0.6634 18 12 ( 4191 1nbw_A) ( 703 1cxq_A) 0.4440 0.7927 5.5554 ( 1 19 28) 0 0.4440 0.7927 18 10 ( 4191 1nbw_A) ( 713 1cza_N) 0.4441 0.7934 4.3577 ( 1 19 28) 0 0.4976 0.8595 18 10 ( 4191 1nbw_A) ( 714 1cza_N) 0.2222 0.2856 11.7679 ( 0 3 6) 0 0.2780 0.2909 18 14 ( 4191 1nbw_A) ( 934 1dt9_A) 0.2222 0.4433 11.4747 ( 0 2 6) 0 0.2222 0.4433 18 9 ( 4191 1nbw_A) ( 1021 1e3m_A) 0.4402 0.7871 3.8568 ( 1 10 28) 0 0.4402 0.7871 18 9 ( 4191 1nbw_A) ( 1033 1e4f_T) 0.4442 0.5706 4.3412 ( 1 21 28) 0 0.4442 0.5706 18 14 ( 4191 1nbw_A) ( 1034 1e4f_T) 0.2222 0.3076 8.6672 ( 0 5 6) 0 0.5298 0.6669 18 13 ( 4191 1nbw_A) ( 1191 1eke_A) 0.4441 0.5702 4.1787 ( 1 19 28) 0 0.4441 0.5702 18 14 ( 4191 1nbw_A) ( 1223 1eo1_A) 0.3889 0.8747 3.5388 ( 0 11 21) 0 0.3889 0.8747 18 8 ( 4191 1nbw_A) ( 1289 1ewq_A) 0.3889 0.6999 3.5484 ( 0 10 21) 0 0.3889 0.6999 18 10 ( 4191 1nbw_A) ( 1305 1exq_A) 0.3333 0.6664 4.7192 ( 0 9 15) 0 0.3333 0.6665 18 9 ( 4191 1nbw_A) ( 1522 1fjg_K) 0.3889 0.9995 3.4614 ( 0 10 21) 0 0.3889 0.9995 18 7 ( 4191 1nbw_A) ( 1656 1fxx_A) 0.2222 0.1290 7.8209 ( 0 4 6) 0 0.3878 0.2355 18 31 ( 4191 1nbw_A) ( 1778 1g99_A) 0.2778 0.4545 4.6410 ( 0 6 10) 0 0.3169 0.4545 18 11 ( 4191 1nbw_A) ( 1779 1g99_A) 0.2222 0.2500 9.6897 ( 0 5 6) 0 0.2222 0.2500 18 16 ( 4191 1nbw_A) ( 2218 1hjr_A) 0.4444 0.7993 4.8898 ( 0 14 28) 0 0.4444 0.7993 18 10 ( 4191 1nbw_A) ( 2296 1hux_A) 0.2778 0.2778 3.7715 ( 0 6 10) 0 0.4443 0.4443 18 18 ( 4191 1nbw_A) ( 2378 1i39_A) 0.3889 0.5385 2.6519 ( 0 13 21) 0 0.3889 0.5385 18 13 ( 4191 1nbw_A) ( 2483 1ig8_A) 0.4440 0.7224 3.7303 ( 1 18 28) 0 0.4972 0.7878 18 11 ( 4191 1nbw_A) ( 2484 1ig8_A) 0.2403 0.2451 6.3382 ( 6 15 21) 0 0.2500 0.2666 18 15 ( 4191 1nbw_A) ( 2491 1ih7_A) 0.2222 0.1481 3.3207 ( 0 3 6) 0 0.2420 0.2235 18 27 ( 4191 1nbw_A) ( 2619 1iv0_A) 0.3889 0.9995 3.3024 ( 0 11 21) 0 0.3889 0.9995 18 7 ( 4191 1nbw_A) ( 2733 1j54_A) 0.3801 0.5286 4.9618 ( 2 14 21) 0 0.3801 0.5286 18 12 ( 4191 1nbw_A) ( 2775 1j9a_A) 0.1763 0.1895 15.9739 ( 2 4 6) 0 0.1763 0.1895 18 14 ( 4191 1nbw_A) ( 2821 1jce_A) 0.4442 0.6646 3.1119 ( 1 20 28) 0 0.4442 0.6646 18 12 ( 4191 1nbw_A) ( 2822 1jce_A) 0.2222 0.2667 4.9614 ( 0 2 6) 0 0.3484 0.3995 18 15 ( 4191 1nbw_A) ( 2910 1jj2_M) 0.3333 0.5454 3.9689 ( 0 9 15) 0 0.3333 0.5454 18 11 ( 4191 1nbw_A) ( 2954 1jl1_A) 0.3889 0.6996 5.1388 ( 0 12 21) 0 0.3889 0.6996 18 10 ( 4191 1nbw_A) ( 3210 1k8k_A) 0.2222 0.2500 8.5559 ( 0 2 6) 0 0.4280 0.4718 18 16 ( 4191 1nbw_A) ( 3260 1kcf_A) 0.4435 0.6599 5.3044 ( 1 15 28) 0 0.4435 0.6599 18 12 ( 4191 1nbw_A) ( 3286 1kfs_A) 0.2172 0.3021 5.8076 ( 1 4 6) 0 0.2778 0.4166 18 12 ( 4191 1nbw_A) ( 3925 1mgt_A) 0.2222 0.6662 5.6035 ( 0 2 6) 0 0.2222 0.6662 18 6 ( 4191 1nbw_A) ( 4043 1mus_A) 0.2778 0.1852 5.8325 ( 0 5 10) 0 0.3909 0.3103 18 27 ( 4191 1nbw_A) ( 4057 1mwm_A) 0.4402 0.6835 4.6223 ( 2 20 28) 0 0.4402 0.6835 18 11 ( 4191 1nbw_A) ( 4058 1mwm_A) 0.2222 0.3634 10.4033 ( 0 3 6) 0 0.4441 0.7233 18 11 ( 4191 1nbw_A) ( 4191 1nbw_A) 1.0000 1.0000 0.0000 ( 0 114 153) 0 1.0000 1.0000 18 18 ( 4191 1nbw_A) ( 4193 1nbw_A) 0.2222 0.2499 10.9838 ( 0 0 6) 0 0.3877 0.4353 18 16 ( 4191 1nbw_A) ( 4281 1nk4_A) 0.3309 0.4825 4.1323 ( 1 8 15) 0 0.3309 0.4825 18 12 ( 4191 1nbw_A) ( 4391 1nu0_A) 0.3889 0.8741 4.6509 ( 0 12 21) 0 0.3889 0.8741 18 8 ( 4191 1nbw_A) ( 4469 1o13_A) 0.3889 0.8746 3.7629 ( 0 13 21) 0 0.3889 0.8746 18 8 ( 4191 1nbw_A) ( 4935 1p90_A) 0.3889 0.6999 3.8247 ( 0 13 21) 0 0.3889 0.6999 18 10 ( 4191 1nbw_A) ( 5120 1pv9_A) 0.2222 0.3333 5.6350 ( 0 1 6) 0 0.4380 0.6241 18 12 ( 4191 1nbw_A) ( 5243 1q8i_A) 0.3333 0.2143 4.2211 ( 0 7 15) 0 0.3769 0.2750 18 28 ( 4191 1nbw_A) ( 5447 1qtm_A) 0.2222 0.4441 8.4065 ( 0 2 6) 0 0.2222 0.4444 18 9 ( 4191 1nbw_A) ( 5500 1qz5_A) 0.4441 0.7233 3.4111 ( 1 19 28) 0 0.4441 0.7233 18 11 ( 4191 1nbw_A) ( 5501 1qz5_A) 0.2201 0.2201 9.2057 ( 1 5 6) 0 0.4402 0.4402 18 18 ( 4191 1nbw_A) ( 5883 1t7p_A) 0.2778 0.4167 4.1574 ( 0 5 10) 0 0.2778 0.4167 18 12 ( 4191 1nbw_A) ( 5906 1tgo_A) 0.3333 0.2222 4.4648 ( 0 8 15) 0 0.3758 0.2838 18 27 ( 4191 1nbw_A) ( 6064 1uoc_A) 0.3734 0.3916 5.0492 ( 2 12 21) 0 0.3734 0.3916 18 17 ( 4191 1nbw_A) ( 6249 1vhx_A) 0.3889 0.6998 4.2521 ( 0 12 21) 0 0.3889 0.6998 18 10 ( 4191 1nbw_A) ( 6299 1vk0_A) 0.2778 0.3333 4.7269 ( 0 5 10) 0 0.2778 0.3333 18 15 ( 4191 1nbw_A) ( 6323 1vrt_A) 0.3889 0.8742 4.4415 ( 0 12 21) 0 0.3889 0.8742 18 8 -------------------------------------------------------------------------------------------------------------------------