------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4391 1nu0_A) ( 247 1az9 ) 0.6246 0.3571 5.9141 ( 0 6 10) 0 0.9963 0.5712 8 14 ( 4391 1nu0_A) ( 345 1bco ) 0.7486 0.5452 6.2580 ( 0 8 15) 0 0.7486 0.5452 8 11 ( 4391 1nu0_A) ( 463 1bu6_O) 0.8741 0.3889 4.6789 ( 0 12 21) 0 0.8741 0.3889 8 18 ( 4391 1nu0_A) ( 464 1bu6_O) 0.8714 0.4117 6.5470 ( 0 13 21) 0 0.9930 0.4704 8 17 ( 4391 1nu0_A) ( 471 1bup_A) 0.6221 0.3124 9.5101 ( 0 7 10) 0 0.6221 0.3124 8 16 ( 4391 1nu0_A) ( 472 1bup_A) 0.4993 0.3332 8.8194 ( 0 2 6) 0 0.4993 0.3332 8 12 ( 4391 1nu0_A) ( 592 1chm_A) 0.8739 0.5832 4.8904 ( 0 13 21) 0 0.9966 0.6662 8 12 ( 4391 1nu0_A) ( 703 1cxq_A) 0.7451 0.5984 8.6067 ( 0 7 15) 0 0.9763 0.7920 8 10 ( 4391 1nu0_A) ( 713 1cza_N) 0.8728 0.6993 5.8300 ( 0 12 21) 0 0.8728 0.6993 8 10 ( 4391 1nu0_A) ( 714 1cza_N) 0.4993 0.2857 8.7217 ( 0 3 6) 0 0.6233 0.3570 8 14 ( 4391 1nu0_A) ( 934 1dt9_A) 0.9966 0.8870 5.4781 ( 0 19 28) 0 0.9966 0.8870 8 9 ( 4391 1nu0_A) ( 1021 1e3m_A) 0.9976 0.8875 5.0308 ( 0 13 28) 0 0.9976 0.8875 8 9 ( 4391 1nu0_A) ( 1033 1e4f_T) 0.8741 0.4999 4.5852 ( 0 13 21) 0 0.8741 0.4999 8 14 ( 4391 1nu0_A) ( 1034 1e4f_T) 0.8715 0.5381 6.5227 ( 0 13 21) 0 0.8715 0.5381 8 13 ( 4391 1nu0_A) ( 1191 1eke_A) 0.4999 0.2857 4.8907 ( 0 3 6) 0 0.4999 0.2857 8 14 ( 4391 1nu0_A) ( 1223 1eo1_A) 0.9973 0.9973 5.1499 ( 0 18 28) 0 0.9973 0.9973 8 8 ( 4391 1nu0_A) ( 1289 1ewq_A) 0.9980 0.7993 4.8113 ( 0 16 28) 0 0.9980 0.7993 8 10 ( 4391 1nu0_A) ( 1305 1exq_A) 0.7481 0.6656 6.7884 ( 0 7 15) 0 0.7481 0.6656 8 9 ( 4391 1nu0_A) ( 1522 1fjg_K) 0.8743 0.9987 4.3333 ( 0 11 21) 0 0.8743 0.9987 8 7 ( 4391 1nu0_A) ( 1656 1fxx_A) 0.9961 0.2581 5.6768 ( 0 17 28) 0 0.9961 0.2581 8 31 ( 4391 1nu0_A) ( 1778 1g99_A) 0.8749 0.6363 2.8852 ( 0 11 21) 0 0.8749 0.6363 8 11 ( 4391 1nu0_A) ( 1779 1g99_A) 0.2462 0.2102 9.7971 ( 2 5 6) 0 0.9940 0.4998 8 16 ( 4391 1nu0_A) ( 2218 1hjr_A) 0.9987 0.7996 4.2685 ( 0 19 28) 0 0.9987 0.7996 8 10 ( 4391 1nu0_A) ( 2296 1hux_A) 0.8747 0.3889 3.5679 ( 0 14 21) 0 0.8747 0.3889 8 18 ( 4391 1nu0_A) ( 2378 1i39_A) 0.5000 0.3077 3.9565 ( 0 3 6) 0 0.5000 0.3077 8 13 ( 4391 1nu0_A) ( 2483 1ig8_A) 0.8735 0.6361 5.2680 ( 0 12 21) 0 0.8735 0.6361 8 11 ( 4391 1nu0_A) ( 2484 1ig8_A) 0.4994 0.2666 8.4976 ( 0 4 6) 0 0.4994 0.2666 8 15 ( 4391 1nu0_A) ( 2491 1ih7_A) 0.6223 0.1852 9.3264 ( 0 4 10) 0 0.6223 0.2507 8 27 ( 4391 1nu0_A) ( 2619 1iv0_A) 0.8740 0.9980 4.7705 ( 0 11 21) 0 0.8740 0.9980 8 7 ( 4391 1nu0_A) ( 2733 1j54_A) 0.9960 0.6661 5.7148 ( 0 17 28) 0 0.9960 0.6661 8 12 ( 4391 1nu0_A) ( 2775 1j9a_A) 0.6246 0.3571 5.8860 ( 0 6 10) 0 0.7489 0.4285 8 14 ( 4391 1nu0_A) ( 2821 1jce_A) 0.8745 0.5833 4.0903 ( 0 11 21) 0 0.8745 0.5833 8 12 ( 4391 1nu0_A) ( 2822 1jce_A) 0.8720 0.4665 6.2689 ( 0 13 21) 0 0.8720 0.4665 8 15 ( 4391 1nu0_A) ( 2910 1jj2_M) 0.7489 0.5452 5.8435 ( 0 8 15) 0 0.7490 0.5453 8 11 ( 4391 1nu0_A) ( 2954 1jl1_A) 0.4956 0.3985 13.9192 ( 0 3 6) 0 0.4993 0.3998 8 10 ( 4391 1nu0_A) ( 3210 1k8k_A) 0.7482 0.3749 6.7000 ( 0 8 15) 0 0.7483 0.3749 8 16 ( 4391 1nu0_A) ( 3260 1kcf_A) 0.9943 0.6659 6.2508 ( 0 18 28) 0 0.9943 0.6659 8 12 ( 4391 1nu0_A) ( 3286 1kfs_A) 0.9731 0.6629 6.0083 ( 1 18 28) 0 0.9731 0.6629 8 12 ( 4391 1nu0_A) ( 3925 1mgt_A) nil ( 4391 1nu0_A) ( 4043 1mus_A) 0.7487 0.2222 6.1814 ( 0 6 15) 0 0.7487 0.2222 8 27 ( 4391 1nu0_A) ( 4057 1mwm_A) 0.8739 0.6361 4.8673 ( 0 12 21) 0 0.8739 0.6361 8 11 ( 4391 1nu0_A) ( 4058 1mwm_A) 0.6238 0.4543 7.5214 ( 0 7 10) 0 0.8685 0.6350 8 11 ( 4391 1nu0_A) ( 4191 1nbw_A) 0.8741 0.3889 4.6509 ( 0 12 21) 0 0.8741 0.3889 8 18 ( 4391 1nu0_A) ( 4193 1nbw_A) 0.4996 0.2500 7.5204 ( 0 3 6) 0 0.4996 0.2500 8 16 ( 4391 1nu0_A) ( 4281 1nk4_A) 0.9672 0.6621 6.2235 ( 1 17 28) 0 0.9672 0.6621 8 12 ( 4391 1nu0_A) ( 4391 1nu0_A) 1.0000 1.0000 0.0000 ( 0 20 28) 0 1.0000 1.0000 8 8 ( 4391 1nu0_A) ( 4469 1o13_A) 0.9973 0.9973 5.1604 ( 0 18 28) 0 0.9973 0.9973 8 8 ( 4391 1nu0_A) ( 4935 1p90_A) 0.9973 0.7991 5.1904 ( 0 18 28) 0 0.9973 0.7991 8 10 ( 4391 1nu0_A) ( 5120 1pv9_A) 0.8741 0.5832 4.6140 ( 0 13 21) 0 0.9981 0.6664 8 12 ( 4391 1nu0_A) ( 5243 1q8i_A) 0.7479 0.2143 6.9733 ( 0 8 15) 0 0.7479 0.2267 8 28 ( 4391 1nu0_A) ( 5447 1qtm_A) 0.7487 0.6659 6.1800 ( 0 9 15) 0 0.7487 0.6659 8 9 ( 4391 1nu0_A) ( 5500 1qz5_A) 0.8741 0.6362 4.5979 ( 0 10 21) 0 0.8741 0.6362 8 11 ( 4391 1nu0_A) ( 5501 1qz5_A) 0.7494 0.3333 5.1446 ( 0 7 15) 0 0.7494 0.3333 8 18 ( 4391 1nu0_A) ( 5883 1t7p_A) 0.9659 0.6619 6.6061 ( 1 17 28) 0 0.9659 0.6619 8 12 ( 4391 1nu0_A) ( 5906 1tgo_A) 0.9940 0.2963 6.3098 ( 0 19 28) 0 0.9940 0.2963 8 27 ( 4391 1nu0_A) ( 6064 1uoc_A) 0.9961 0.4705 5.6656 ( 0 17 28) 0 0.9961 0.4705 8 17 ( 4391 1nu0_A) ( 6249 1vhx_A) 0.9996 0.7999 3.1417 ( 0 19 28) 0 0.9996 0.7999 8 10 ( 4391 1nu0_A) ( 6299 1vk0_A) 0.8717 0.4665 6.4223 ( 0 14 21) 0 0.8717 0.4665 8 15 ( 4391 1nu0_A) ( 6323 1vrt_A) 0.8712 0.8712 6.6419 ( 0 10 21) 0 0.8712 0.8712 8 8 -------------------------------------------------------------------------------------------------------------------------