------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 463 1bu6_O) ( 247 1az9 ) 0.3889 0.5000 3.5961 ( 0 10 21) 0 0.3889 0.5000 18 14 ( 463 1bu6_O) ( 345 1bco ) 0.2222 0.3636 5.1181 ( 0 3 6) 0 0.2222 0.3636 18 11 ( 463 1bu6_O) ( 463 1bu6_O) 1.0000 1.0000 0.0000 ( 0 125 153) 0 1.0000 1.0000 18 18 ( 463 1bu6_O) ( 464 1bu6_O) 0.2777 0.2940 9.6207 ( 0 6 10) 0 0.3257 0.3430 18 17 ( 463 1bu6_O) ( 471 1bup_A) 0.4444 0.4999 4.8477 ( 0 18 28) 0 0.5398 0.5760 18 16 ( 463 1bu6_O) ( 472 1bup_A) 0.2221 0.3328 13.8294 ( 0 2 6) 0 0.3651 0.4090 18 12 ( 463 1bu6_O) ( 592 1chm_A) 0.3308 0.4821 8.2447 ( 1 8 15) 0 0.3773 0.5147 18 12 ( 463 1bu6_O) ( 703 1cxq_A) 0.2778 0.5000 3.7912 ( 0 5 10) 0 0.3085 0.5000 18 10 ( 463 1bu6_O) ( 713 1cza_N) 0.4444 0.7992 4.9570 ( 0 19 28) 0 0.4444 0.7992 18 10 ( 463 1bu6_O) ( 714 1cza_N) 0.3877 0.4960 7.3723 ( 1 12 21) 0 0.4115 0.4960 18 14 ( 463 1bu6_O) ( 934 1dt9_A) 0.3889 0.7771 5.0746 ( 0 14 21) 0 0.3889 0.7771 18 9 ( 463 1bu6_O) ( 1021 1e3m_A) 0.3481 0.4382 4.3542 ( 2 9 21) 0 0.3481 0.6666 18 9 ( 463 1bu6_O) ( 1033 1e4f_T) 0.4757 0.5714 8.1407 ( 3 22 36) 0 0.4757 0.5714 18 14 ( 463 1bu6_O) ( 1034 1e4f_T) 0.4442 0.6139 4.1771 ( 1 20 28) 0 0.4442 0.6139 18 13 ( 463 1bu6_O) ( 1191 1eke_A) 0.2222 0.2856 10.8093 ( 0 5 6) 0 0.3596 0.4202 18 14 ( 463 1bu6_O) ( 1223 1eo1_A) 0.3889 0.8744 4.2458 ( 0 11 21) 0 0.3889 0.8744 18 8 ( 463 1bu6_O) ( 1289 1ewq_A) 0.3889 0.6999 3.1611 ( 0 10 21) 0 0.3889 0.6999 18 10 ( 463 1bu6_O) ( 1305 1exq_A) 0.2200 0.3923 14.0448 ( 1 5 6) 0 0.3333 0.6660 18 9 ( 463 1bu6_O) ( 1522 1fjg_K) 0.3889 0.9999 2.5016 ( 0 10 21) 0 0.3889 0.9999 18 7 ( 463 1bu6_O) ( 1656 1fxx_A) 0.2222 0.1290 8.1589 ( 0 3 6) 0 0.3441 0.2672 18 31 ( 463 1bu6_O) ( 1778 1g99_A) 0.2778 0.4545 4.7541 ( 0 5 10) 0 0.3291 0.4545 18 11 ( 463 1bu6_O) ( 1779 1g99_A) 0.2771 0.3113 8.7691 ( 1 9 10) 0 0.3333 0.3749 18 16 ( 463 1bu6_O) ( 2218 1hjr_A) 0.4344 0.6725 4.6537 ( 2 16 28) 0 0.4344 0.6725 18 10 ( 463 1bu6_O) ( 2296 1hux_A) 0.3889 0.3889 3.6067 ( 0 13 21) 0 0.4995 0.4995 18 18 ( 463 1bu6_O) ( 2378 1i39_A) 0.2222 0.3077 7.9087 ( 0 5 6) 0 0.3315 0.3742 18 13 ( 463 1bu6_O) ( 2483 1ig8_A) 0.4444 0.7271 4.0645 ( 0 18 28) 0 0.4444 0.7271 18 11 ( 463 1bu6_O) ( 2484 1ig8_A) 0.2777 0.3332 10.2717 ( 0 2 10) 0 0.4016 0.4268 18 15 ( 463 1bu6_O) ( 2491 1ih7_A) 0.2636 0.1831 10.2351 ( 1 4 10) 0 0.5439 0.3688 18 27 ( 463 1bu6_O) ( 2619 1iv0_A) 0.3874 0.8777 3.5401 ( 1 11 21) 0 0.3874 0.8777 18 7 ( 463 1bu6_O) ( 2733 1j54_A) 0.3678 0.4754 4.7506 ( 2 11 21) 0 0.3678 0.4825 18 12 ( 463 1bu6_O) ( 2775 1j9a_A) 0.2222 0.2857 7.7245 ( 0 4 6) 0 0.2802 0.3156 18 14 ( 463 1bu6_O) ( 2821 1jce_A) 0.2768 0.4092 7.5893 ( 1 8 10) 0 0.3333 0.5000 18 12 ( 463 1bu6_O) ( 2822 1jce_A) 0.4442 0.5326 4.2799 ( 1 20 28) 0 0.4442 0.5326 18 15 ( 463 1bu6_O) ( 2910 1jj2_M) 0.3333 0.5453 5.2657 ( 0 9 15) 0 0.3678 0.5454 18 11 ( 463 1bu6_O) ( 2954 1jl1_A) 0.3881 0.6859 4.0340 ( 1 13 21) 0 0.3881 0.6859 18 10 ( 463 1bu6_O) ( 3210 1k8k_A) 0.3888 0.4374 6.0681 ( 0 12 21) 0 0.3888 0.4374 18 16 ( 463 1bu6_O) ( 3260 1kcf_A) 0.3332 0.4988 9.9298 ( 0 8 15) 0 0.3596 0.4988 18 12 ( 463 1bu6_O) ( 3286 1kfs_A) 0.2778 0.4165 7.2886 ( 0 8 10) 0 0.4248 0.5830 18 12 ( 463 1bu6_O) ( 3925 1mgt_A) 0.2222 0.6662 5.4411 ( 0 1 6) 0 0.2222 0.6662 18 6 ( 463 1bu6_O) ( 4043 1mus_A) 0.3333 0.2222 5.2449 ( 0 9 15) 0 0.4437 0.3020 18 27 ( 463 1bu6_O) ( 4057 1mwm_A) 0.4441 0.7232 3.8840 ( 1 19 28) 0 0.4441 0.7232 18 11 ( 463 1bu6_O) ( 4058 1mwm_A) 0.3773 0.5405 5.8848 ( 2 13 21) 0 0.3773 0.5405 18 11 ( 463 1bu6_O) ( 4191 1nbw_A) 0.4440 0.4440 3.3492 ( 1 18 28) 0 0.4440 0.4440 18 18 ( 463 1bu6_O) ( 4193 1nbw_A) 0.2714 0.3014 11.9420 ( 1 5 10) 0 0.4158 0.4365 18 16 ( 463 1bu6_O) ( 4281 1nk4_A) 0.3878 0.5754 3.4903 ( 1 12 21) 0 0.3878 0.5754 18 12 ( 463 1bu6_O) ( 4391 1nu0_A) 0.3889 0.8741 4.6789 ( 0 12 21) 0 0.3889 0.8741 18 8 ( 463 1bu6_O) ( 4469 1o13_A) 0.3889 0.8742 4.4283 ( 0 12 21) 0 0.3889 0.8742 18 8 ( 463 1bu6_O) ( 4935 1p90_A) 0.3889 0.6997 4.7870 ( 0 12 21) 0 0.3889 0.6997 18 10 ( 463 1bu6_O) ( 5120 1pv9_A) 0.3889 0.5833 3.6948 ( 0 12 21) 0 0.4229 0.5833 18 12 ( 463 1bu6_O) ( 5243 1q8i_A) 0.3308 0.2140 6.6869 ( 1 8 15) 0 0.3481 0.2604 18 28 ( 463 1bu6_O) ( 5447 1qtm_A) 0.2222 0.4441 8.4255 ( 0 1 6) 0 0.2447 0.4441 18 9 ( 463 1bu6_O) ( 5500 1qz5_A) 0.4439 0.7212 3.4086 ( 1 17 28) 0 0.4439 0.7212 18 11 ( 463 1bu6_O) ( 5501 1qz5_A) 0.2714 0.2714 11.1661 ( 1 5 10) 0 0.2803 0.2803 18 18 ( 463 1bu6_O) ( 5883 1t7p_A) 0.2222 0.3333 6.1093 ( 0 3 6) 0 0.3258 0.4529 18 12 ( 463 1bu6_O) ( 5906 1tgo_A) 0.3414 0.2739 6.4121 ( 5 19 28) 0 0.4441 0.2962 18 27 ( 463 1bu6_O) ( 6064 1uoc_A) 0.2778 0.2941 6.2001 ( 0 7 10) 0 0.3323 0.3515 18 17 ( 463 1bu6_O) ( 6249 1vhx_A) 0.3889 0.6998 3.9151 ( 0 12 21) 0 0.3889 0.6998 18 10 ( 463 1bu6_O) ( 6299 1vk0_A) 0.2778 0.3333 6.8118 ( 0 3 10) 0 0.3525 0.3850 18 15 ( 463 1bu6_O) ( 6323 1vrt_A) 0.3881 0.8348 3.6891 ( 1 13 21) 0 0.3881 0.8348 18 8 -------------------------------------------------------------------------------------------------------------------------