------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 471 1bup_A) ( 247 1az9 ) 0.3125 0.3571 6.8995 ( 0 7 10) 0 0.3741 0.4267 16 14 ( 471 1bup_A) ( 345 1bco ) 0.3750 0.5453 5.5410 ( 0 9 15) 0 0.3750 0.5453 16 11 ( 471 1bup_A) ( 463 1bu6_O) 0.4999 0.4444 4.8477 ( 0 18 28) 0 0.5760 0.5398 16 18 ( 471 1bup_A) ( 464 1bu6_O) 0.3750 0.3529 6.3294 ( 0 13 15) 0 0.4980 0.4851 16 17 ( 471 1bup_A) ( 471 1bup_A) 1.0000 1.0000 0.0000 ( 0 109 120) 0 1.0000 1.0000 16 16 ( 471 1bup_A) ( 472 1bup_A) 0.4375 0.5832 4.4359 ( 0 14 21) 0 0.4375 0.5832 16 12 ( 471 1bup_A) ( 592 1chm_A) 0.3125 0.4165 8.1042 ( 0 7 10) 0 0.3619 0.4531 16 12 ( 471 1bup_A) ( 703 1cxq_A) 0.3124 0.4995 8.2206 ( 0 7 10) 0 0.3570 0.4995 16 10 ( 471 1bup_A) ( 713 1cza_N) 0.5000 0.7996 4.1229 ( 0 22 28) 0 0.5000 0.7996 16 10 ( 471 1bup_A) ( 714 1cza_N) 0.5883 0.6264 8.4935 ( 6 43 55) 0 0.5883 0.6264 16 14 ( 471 1bup_A) ( 934 1dt9_A) 0.4375 0.7773 4.6289 ( 0 15 21) 0 0.4375 0.7773 16 9 ( 471 1bup_A) ( 1021 1e3m_A) 0.3441 0.3640 5.0927 ( 3 11 28) 0 0.3441 0.4444 16 9 ( 471 1bup_A) ( 1033 1e4f_T) 0.5000 0.5714 4.1639 ( 0 23 28) 0 0.5000 0.5714 16 14 ( 471 1bup_A) ( 1034 1e4f_T) 0.5687 0.6426 5.0601 ( 5 38 45) 0 0.5687 0.6919 16 13 ( 471 1bup_A) ( 1191 1eke_A) 0.4999 0.5712 5.6671 ( 0 20 28) 0 0.5094 0.5712 16 14 ( 471 1bup_A) ( 1223 1eo1_A) 0.4375 0.8745 3.9760 ( 0 12 21) 0 0.4375 0.8745 16 8 ( 471 1bup_A) ( 1289 1ewq_A) 0.4779 0.6497 5.2557 ( 2 15 28) 0 0.4779 0.6997 16 10 ( 471 1bup_A) ( 1305 1exq_A) 0.3124 0.5546 8.3670 ( 0 8 10) 0 0.4254 0.6393 16 9 ( 471 1bup_A) ( 1522 1fjg_K) 0.3750 0.8568 3.7520 ( 0 7 15) 0 0.3750 0.8568 16 7 ( 471 1bup_A) ( 1656 1fxx_A) 0.3791 0.2228 6.7548 ( 3 14 21) 0 0.4302 0.2544 16 31 ( 471 1bup_A) ( 1778 1g99_A) 0.4375 0.6362 4.7271 ( 0 14 21) 0 0.4375 0.6362 16 11 ( 471 1bup_A) ( 1779 1g99_A) 0.6123 0.6123 6.1373 ( 3 35 45) 0 0.6123 0.6123 16 16 ( 471 1bup_A) ( 2218 1hjr_A) 0.4999 0.7989 5.4542 ( 0 16 28) 0 0.4999 0.7989 16 10 ( 471 1bup_A) ( 2296 1hux_A) 0.5154 0.4718 5.5011 ( 4 28 36) 0 0.5154 0.4718 16 18 ( 471 1bup_A) ( 2378 1i39_A) 0.4375 0.5384 4.5780 ( 0 15 21) 0 0.4375 0.5384 16 13 ( 471 1bup_A) ( 2483 1ig8_A) 0.5000 0.7270 4.3910 ( 0 19 28) 0 0.5000 0.7270 16 11 ( 471 1bup_A) ( 2484 1ig8_A) 0.5620 0.5994 6.8421 ( 0 27 36) 0 0.5620 0.5994 16 15 ( 471 1bup_A) ( 2491 1ih7_A) 0.4301 0.2587 4.6461 ( 2 17 21) 0 0.4757 0.2943 16 27 ( 471 1bup_A) ( 2619 1iv0_A) 0.3501 0.4865 4.1399 ( 2 10 15) 0 0.3501 0.7131 16 7 ( 471 1bup_A) ( 2733 1j54_A) 0.4360 0.5772 6.1672 ( 1 13 21) 0 0.4360 0.5772 16 12 ( 471 1bup_A) ( 2775 1j9a_A) 0.4874 0.5208 5.7669 ( 5 30 36) 0 0.4874 0.5282 16 14 ( 471 1bup_A) ( 2821 1jce_A) 0.6334 0.7048 4.8698 ( 7 53 66) 0 0.6334 0.7048 16 12 ( 471 1bup_A) ( 2822 1jce_A) 0.6224 0.6632 5.3994 ( 2 36 45) 0 0.6224 0.6632 16 15 ( 471 1bup_A) ( 2910 1jj2_M) 0.2500 0.3636 7.6403 ( 0 3 6) 0 0.3661 0.4363 16 11 ( 471 1bup_A) ( 2954 1jl1_A) 0.2500 0.3998 8.7453 ( 0 3 6) 0 0.3704 0.5589 16 10 ( 471 1bup_A) ( 3210 1k8k_A) 0.3124 0.3124 8.6205 ( 0 6 10) 0 0.4922 0.4922 16 16 ( 471 1bup_A) ( 3260 1kcf_A) 0.4990 0.6625 5.0353 ( 1 17 28) 0 0.4990 0.6625 16 12 ( 471 1bup_A) ( 3286 1kfs_A) 0.2500 0.3333 8.0700 ( 0 5 6) 0 0.3275 0.3479 16 12 ( 471 1bup_A) ( 3925 1mgt_A) 0.2412 0.3877 10.0484 ( 1 4 6) 0 0.2753 0.4661 16 6 ( 471 1bup_A) ( 4043 1mus_A) 0.2500 0.1481 6.9282 ( 0 4 6) 0 0.3749 0.2561 16 27 ( 471 1bup_A) ( 4057 1mwm_A) 0.6159 0.8564 4.5696 ( 3 38 45) 0 0.6159 0.8564 16 11 ( 471 1bup_A) ( 4058 1mwm_A) 0.4906 0.6743 6.8919 ( 2 19 28) 0 0.4906 0.6743 16 11 ( 471 1bup_A) ( 4191 1nbw_A) 0.4995 0.4441 4.7525 ( 1 20 28) 0 0.4995 0.4441 16 18 ( 471 1bup_A) ( 4193 1nbw_A) 0.6380 0.6380 6.9317 ( 5 45 55) 0 0.6380 0.6380 16 16 ( 471 1bup_A) ( 4281 1nk4_A) 0.3016 0.3775 8.1596 ( 1 5 10) 0 0.3094 0.4043 16 12 ( 471 1bup_A) ( 4391 1nu0_A) 0.3124 0.6221 9.5101 ( 0 7 10) 0 0.3124 0.6221 16 8 ( 471 1bup_A) ( 4469 1o13_A) 0.4369 0.8559 4.2170 ( 1 16 21) 0 0.4374 0.8732 16 8 ( 471 1bup_A) ( 4935 1p90_A) 0.4924 0.7337 4.9609 ( 2 20 28) 0 0.4924 0.7337 16 10 ( 471 1bup_A) ( 5120 1pv9_A) 0.3125 0.4166 6.4579 ( 0 8 10) 0 0.4203 0.4665 16 12 ( 471 1bup_A) ( 5243 1q8i_A) 0.4364 0.2499 6.5118 ( 1 14 21) 0 0.4364 0.2788 16 28 ( 471 1bup_A) ( 5447 1qtm_A) 0.3125 0.5549 7.6375 ( 0 5 10) 0 0.3125 0.5549 16 9 ( 471 1bup_A) ( 5500 1qz5_A) 0.5898 0.7491 4.5226 ( 4 35 45) 0 0.5898 0.7926 16 11 ( 471 1bup_A) ( 5501 1qz5_A) 0.3750 0.3333 3.5024 ( 0 11 15) 0 0.4924 0.4401 16 18 ( 471 1bup_A) ( 5883 1t7p_A) 0.3624 0.3994 6.1446 ( 4 17 21) 0 0.3624 0.3994 16 12 ( 471 1bup_A) ( 5906 1tgo_A) 0.4375 0.2593 5.2451 ( 0 15 21) 0 0.4375 0.2892 16 27 ( 471 1bup_A) ( 6064 1uoc_A) 0.2500 0.2353 5.7959 ( 0 4 6) 0 0.4531 0.4342 16 17 ( 471 1bup_A) ( 6249 1vhx_A) 0.4374 0.6994 5.6408 ( 0 13 21) 0 0.4374 0.6994 16 10 ( 471 1bup_A) ( 6299 1vk0_A) 0.3093 0.3290 10.9062 ( 1 7 10) 0 0.3558 0.3612 16 15 ( 471 1bup_A) ( 6323 1vrt_A) 0.2413 0.3671 5.7478 ( 1 4 6) 0 0.3732 0.6999 16 8 -------------------------------------------------------------------------------------------------------------------------