------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 472 1bup_A) ( 247 1az9 ) 0.5754 0.4963 4.5746 ( 1 12 21) 0 0.5754 0.4963 12 14 ( 472 1bup_A) ( 345 1bco ) 0.3429 0.3555 9.1082 ( 1 4 10) 0 0.4166 0.4545 12 11 ( 472 1bup_A) ( 463 1bu6_O) 0.3333 0.2222 7.1706 ( 0 5 6) 0 0.4090 0.3651 12 18 ( 472 1bup_A) ( 464 1bu6_O) 0.6600 0.4694 5.1260 ( 1 15 28) 0 0.6600 0.4694 12 17 ( 472 1bup_A) ( 471 1bup_A) 0.5832 0.4375 4.4359 ( 0 14 21) 0 0.5832 0.4375 12 16 ( 472 1bup_A) ( 472 1bup_A) 1.0000 1.0000 0.0000 ( 0 50 66) 0 1.0000 1.0000 12 12 ( 472 1bup_A) ( 592 1chm_A) 0.5754 0.5754 4.5262 ( 1 12 21) 0 0.5754 0.5754 12 12 ( 472 1bup_A) ( 703 1cxq_A) 0.4999 0.5998 4.7893 ( 0 9 15) 0 0.4999 0.5998 12 10 ( 472 1bup_A) ( 713 1cza_N) 0.2643 0.2799 12.0466 ( 2 6 6) 0 0.2643 0.2799 12 10 ( 472 1bup_A) ( 714 1cza_N) 0.6557 0.5663 8.6480 ( 1 14 28) 0 0.6557 0.5709 12 14 ( 472 1bup_A) ( 934 1dt9_A) 0.5833 0.7775 4.0549 ( 0 13 21) 0 0.5833 0.7775 12 9 ( 472 1bup_A) ( 1021 1e3m_A) 0.3671 0.3880 4.4961 ( 1 4 15) 0 0.3671 0.4397 12 9 ( 472 1bup_A) ( 1033 1e4f_T) 0.5833 0.5000 3.1906 ( 0 14 21) 0 0.5833 0.5000 12 14 ( 472 1bup_A) ( 1034 1e4f_T) 0.8666 0.8113 4.5947 ( 3 39 55) 0 0.8666 0.8113 12 13 ( 472 1bup_A) ( 1191 1eke_A) 0.5832 0.4999 5.1094 ( 0 13 21) 0 0.5832 0.4999 12 14 ( 472 1bup_A) ( 1223 1eo1_A) 0.3333 0.4996 7.6120 ( 0 3 6) 0 0.3333 0.4996 12 8 ( 472 1bup_A) ( 1289 1ewq_A) 0.5000 0.6000 3.0303 ( 0 6 15) 0 0.5000 0.6000 12 10 ( 472 1bup_A) ( 1305 1exq_A) 0.4999 0.6663 5.1762 ( 0 9 15) 0 0.4999 0.6663 12 9 ( 472 1bup_A) ( 1522 1fjg_K) 0.3327 0.5630 13.9221 ( 0 2 6) 0 0.3430 0.5695 12 7 ( 472 1bup_A) ( 1656 1fxx_A) 0.3332 0.1290 8.5423 ( 0 5 6) 0 0.4042 0.2075 12 31 ( 472 1bup_A) ( 1778 1g99_A) 0.4167 0.4545 4.1872 ( 0 5 10) 0 0.4167 0.4545 12 11 ( 472 1bup_A) ( 1779 1g99_A) 0.6611 0.4987 6.0286 ( 1 16 28) 0 0.6611 0.5276 12 16 ( 472 1bup_A) ( 2218 1hjr_A) 0.5754 0.6810 3.5545 ( 1 12 21) 0 0.5754 0.6810 12 10 ( 472 1bup_A) ( 2296 1hux_A) 0.6697 0.4868 7.1067 ( 3 26 36) 0 0.6697 0.4868 12 18 ( 472 1bup_A) ( 2378 1i39_A) 0.3331 0.3075 10.9856 ( 0 1 6) 0 0.3333 0.3077 12 13 ( 472 1bup_A) ( 2483 1ig8_A) 0.5833 0.6363 2.6965 ( 0 11 21) 0 0.5833 0.6363 12 11 ( 472 1bup_A) ( 2484 1ig8_A) 0.5333 0.4931 7.7434 ( 4 23 36) 0 0.5333 0.4931 12 15 ( 472 1bup_A) ( 2491 1ih7_A) 0.4999 0.2222 5.0402 ( 0 7 15) 0 0.4999 0.2222 12 27 ( 472 1bup_A) ( 2619 1iv0_A) 0.3332 0.5694 9.6597 ( 0 3 6) 0 0.3332 0.5694 12 7 ( 472 1bup_A) ( 2733 1j54_A) 0.5719 0.5719 6.4122 ( 1 11 21) 0 0.5719 0.5719 12 12 ( 472 1bup_A) ( 2775 1j9a_A) 0.4997 0.4285 6.8383 ( 0 7 15) 0 0.4997 0.4285 12 14 ( 472 1bup_A) ( 2821 1jce_A) 0.6644 0.6644 8.1874 ( 0 15 28) 0 0.6644 0.6644 12 12 ( 472 1bup_A) ( 2822 1jce_A) 0.6897 0.6273 4.2352 ( 5 38 55) 0 0.6897 0.6273 12 15 ( 472 1bup_A) ( 2910 1jj2_M) 0.4161 0.4537 10.4371 ( 0 6 10) 0 0.5722 0.6195 12 11 ( 472 1bup_A) ( 2954 1jl1_A) 0.3333 0.3999 6.9639 ( 0 5 6) 0 0.4163 0.4991 12 10 ( 472 1bup_A) ( 3210 1k8k_A) 0.9586 0.7395 5.8768 ( 3 47 66) 0 0.9586 0.7395 12 16 ( 472 1bup_A) ( 3260 1kcf_A) 0.5723 0.5723 3.7592 ( 1 11 21) 0 0.5723 0.5723 12 12 ( 472 1bup_A) ( 3286 1kfs_A) 0.3326 0.3326 14.7239 ( 0 3 6) 0 0.3326 0.3326 12 12 ( 472 1bup_A) ( 3925 1mgt_A) 0.1940 0.1996 11.6118 ( 1 2 6) 0 0.2424 0.2494 12 6 ( 472 1bup_A) ( 4043 1mus_A) 0.5770 0.2591 6.8084 ( 1 13 21) 0 0.5770 0.2591 12 27 ( 472 1bup_A) ( 4057 1mwm_A) 0.3333 0.3636 6.2010 ( 0 4 6) 0 0.5771 0.6268 12 11 ( 472 1bup_A) ( 4058 1mwm_A) 0.7228 0.7776 6.0795 ( 2 24 36) 0 0.7228 0.7776 12 11 ( 472 1bup_A) ( 4191 1nbw_A) 0.3332 0.2222 8.8334 ( 0 4 6) 0 0.5642 0.4835 12 18 ( 472 1bup_A) ( 4193 1nbw_A) 0.6790 0.5426 6.0281 ( 3 27 36) 0 0.7231 0.5557 12 16 ( 472 1bup_A) ( 4281 1nk4_A) 0.4163 0.4163 9.2678 ( 0 8 10) 0 0.4163 0.4163 12 12 ( 472 1bup_A) ( 4391 1nu0_A) 0.3328 0.4958 13.7602 ( 0 2 6) 0 0.3328 0.4958 12 8 ( 472 1bup_A) ( 4469 1o13_A) 0.5000 0.7499 3.1103 ( 0 10 15) 0 0.5000 0.7499 12 8 ( 472 1bup_A) ( 4935 1p90_A) 0.5000 0.6000 2.9040 ( 0 10 15) 0 0.5000 0.6000 12 10 ( 472 1bup_A) ( 5120 1pv9_A) 0.4112 0.4112 11.6390 ( 1 9 10) 0 0.4112 0.4112 12 12 ( 472 1bup_A) ( 5243 1q8i_A) 0.4717 0.2138 6.4792 ( 1 7 15) 0 0.4998 0.2344 12 28 ( 472 1bup_A) ( 5447 1qtm_A) 0.3257 0.4157 9.5662 ( 1 6 6) 0 0.3257 0.4157 12 9 ( 472 1bup_A) ( 5500 1qz5_A) 0.5833 0.6363 3.5944 ( 0 13 21) 0 0.5833 0.6363 12 11 ( 472 1bup_A) ( 5501 1qz5_A) 0.9894 0.6652 4.7763 ( 2 46 66) 0 0.9894 0.6652 12 18 ( 472 1bup_A) ( 5883 1t7p_A) 0.3333 0.3333 6.9217 ( 0 4 6) 0 0.4823 0.4823 12 12 ( 472 1bup_A) ( 5906 1tgo_A) 0.4077 0.1850 13.9901 ( 1 8 10) 0 0.4077 0.2320 12 27 ( 472 1bup_A) ( 6064 1uoc_A) 0.3436 0.3273 8.1422 ( 4 14 28) 0 0.5774 0.4107 12 17 ( 472 1bup_A) ( 6249 1vhx_A) 0.4999 0.5998 4.7827 ( 0 8 15) 0 0.4999 0.5999 12 10 ( 472 1bup_A) ( 6299 1vk0_A) 0.4152 0.3328 13.3512 ( 0 4 10) 0 0.4152 0.3328 12 15 ( 472 1bup_A) ( 6323 1vrt_A) 0.3330 0.4974 12.2232 ( 0 3 6) 0 0.3330 0.4974 12 8 -------------------------------------------------------------------------------------------------------------------------