------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4935 1p90_A) ( 247 1az9 ) 0.5000 0.3571 4.4808 ( 0 4 10) 0 0.7987 0.5712 10 14 ( 4935 1p90_A) ( 345 1bco ) 0.6995 0.6360 5.3531 ( 0 12 21) 0 0.6995 0.6360 10 11 ( 4935 1p90_A) ( 463 1bu6_O) 0.6997 0.3889 4.7870 ( 0 12 21) 0 0.6997 0.3889 10 18 ( 4935 1p90_A) ( 464 1bu6_O) 0.5999 0.3529 4.5603 ( 0 11 15) 0 0.7995 0.4705 10 17 ( 4935 1p90_A) ( 471 1bup_A) 0.7337 0.4924 4.9609 ( 2 20 28) 0 0.7337 0.4924 10 16 ( 4935 1p90_A) ( 472 1bup_A) 0.6000 0.5000 2.9040 ( 0 10 15) 0 0.6000 0.5000 10 12 ( 4935 1p90_A) ( 592 1chm_A) 0.5998 0.4999 4.9455 ( 0 9 15) 0 0.7993 0.6664 10 12 ( 4935 1p90_A) ( 703 1cxq_A) 0.6997 0.6997 4.8111 ( 0 14 21) 0 0.6997 0.6997 10 10 ( 4935 1p90_A) ( 713 1cza_N) 0.6999 0.6999 3.5335 ( 0 15 21) 0 0.6999 0.6999 10 10 ( 4935 1p90_A) ( 714 1cza_N) 0.4693 0.3507 13.0876 ( 1 7 10) 0 0.4996 0.3571 10 14 ( 4935 1p90_A) ( 934 1dt9_A) 0.7998 0.8885 3.6971 ( 0 20 28) 0 0.7998 0.8885 10 9 ( 4935 1p90_A) ( 1021 1e3m_A) 0.7797 0.8555 4.1556 ( 1 14 28) 0 0.7797 0.8555 10 9 ( 4935 1p90_A) ( 1033 1e4f_T) 0.6998 0.5000 3.9208 ( 0 15 21) 0 0.6998 0.5000 10 14 ( 4935 1p90_A) ( 1034 1e4f_T) 0.7933 0.6136 4.5373 ( 1 19 28) 0 0.7994 0.6152 10 13 ( 4935 1p90_A) ( 1191 1eke_A) 0.4713 0.3512 9.0265 ( 1 7 10) 0 0.5063 0.4756 10 14 ( 4935 1p90_A) ( 1223 1eo1_A) 0.8000 0.9999 2.4895 ( 0 19 28) 0 0.8000 0.9999 10 8 ( 4935 1p90_A) ( 1289 1ewq_A) 0.7996 0.7996 4.2802 ( 0 16 28) 0 0.7996 0.7996 10 10 ( 4935 1p90_A) ( 1305 1exq_A) 0.5998 0.6663 5.1442 ( 0 9 15) 0 0.5998 0.6664 10 9 ( 4935 1p90_A) ( 1522 1fjg_K) 0.6996 0.9975 5.0568 ( 0 11 21) 0 0.6996 0.9975 10 7 ( 4935 1p90_A) ( 1656 1fxx_A) 0.6996 0.2258 4.9122 ( 0 12 21) 0 0.7917 0.2580 10 31 ( 4935 1p90_A) ( 1778 1g99_A) 0.6998 0.6362 4.1469 ( 0 13 21) 0 0.6998 0.6362 10 11 ( 4935 1p90_A) ( 1779 1g99_A) 0.3998 0.2500 8.4690 ( 0 2 6) 0 0.8991 0.5624 10 16 ( 4935 1p90_A) ( 2218 1hjr_A) 0.7996 0.7996 4.3399 ( 0 19 28) 0 0.7996 0.7996 10 10 ( 4935 1p90_A) ( 2296 1hux_A) 0.6998 0.3889 4.2352 ( 0 16 21) 0 0.6998 0.3889 10 18 ( 4935 1p90_A) ( 2378 1i39_A) 0.4715 0.3762 8.0514 ( 1 7 10) 0 0.4995 0.4319 10 13 ( 4935 1p90_A) ( 2483 1ig8_A) 0.7947 0.7240 3.7138 ( 1 20 28) 0 0.7947 0.7240 10 11 ( 4935 1p90_A) ( 2484 1ig8_A) 0.7079 0.5179 5.8220 ( 2 18 28) 0 0.7079 0.5179 10 15 ( 4935 1p90_A) ( 2491 1ih7_A) 0.4998 0.1852 6.7581 ( 0 4 10) 0 0.4998 0.2598 10 27 ( 4935 1p90_A) ( 2619 1iv0_A) 0.6858 0.9269 4.1826 ( 1 13 21) 0 0.6858 0.9269 10 7 ( 4935 1p90_A) ( 2733 1j54_A) 0.6996 0.5832 5.1347 ( 0 12 21) 0 0.6996 0.5832 10 12 ( 4935 1p90_A) ( 2775 1j9a_A) 0.6993 0.4999 5.8229 ( 0 14 21) 0 0.6993 0.5453 10 14 ( 4935 1p90_A) ( 2821 1jce_A) 0.6999 0.5833 3.4942 ( 0 14 21) 0 0.6999 0.5833 10 12 ( 4935 1p90_A) ( 2822 1jce_A) 0.4123 0.3872 5.1570 ( 5 21 28) 0 0.4200 0.3872 10 15 ( 4935 1p90_A) ( 2910 1jj2_M) 0.6851 0.6269 6.3844 ( 1 13 21) 0 0.7942 0.7237 10 11 ( 4935 1p90_A) ( 2954 1jl1_A) 0.3996 0.3996 10.2555 ( 0 3 6) 0 0.3996 0.3996 10 10 ( 4935 1p90_A) ( 3210 1k8k_A) 0.6983 0.4373 7.1629 ( 0 13 21) 0 0.6983 0.4373 10 16 ( 4935 1p90_A) ( 3260 1kcf_A) 0.7989 0.6662 5.4000 ( 0 17 28) 0 0.7989 0.6662 10 12 ( 4935 1p90_A) ( 3286 1kfs_A) 0.3669 0.3185 9.3325 ( 1 5 6) 0 0.6994 0.5831 10 12 ( 4935 1p90_A) ( 3925 1mgt_A) 0.3996 0.6618 9.9465 ( 0 4 6) 0 0.3996 0.6618 10 6 ( 4935 1p90_A) ( 4043 1mus_A) 0.4998 0.1852 6.5151 ( 0 7 10) 0 0.4998 0.2632 10 27 ( 4935 1p90_A) ( 4057 1mwm_A) 0.6998 0.6362 4.3020 ( 0 14 21) 0 0.6998 0.6362 10 11 ( 4935 1p90_A) ( 4058 1mwm_A) 0.3995 0.3633 10.4504 ( 0 3 6) 0 0.7989 0.7266 10 11 ( 4935 1p90_A) ( 4191 1nbw_A) 0.6999 0.3889 3.8247 ( 0 13 21) 0 0.6999 0.3889 10 18 ( 4935 1p90_A) ( 4193 1nbw_A) 0.7947 0.4995 3.9913 ( 1 20 28) 0 0.7947 0.4995 10 16 ( 4935 1p90_A) ( 4281 1nk4_A) 0.5998 0.4999 4.7679 ( 0 10 15) 0 0.5998 0.4999 10 12 ( 4935 1p90_A) ( 4391 1nu0_A) 0.7991 0.9973 5.1904 ( 0 18 28) 0 0.7991 0.9973 10 8 ( 4935 1p90_A) ( 4469 1o13_A) 0.7965 0.9894 2.6313 ( 1 22 28) 0 0.7965 0.9894 10 8 ( 4935 1p90_A) ( 4935 1p90_A) 1.0000 1.0000 0.0000 ( 0 39 45) 0 1.0000 1.0000 10 10 ( 4935 1p90_A) ( 5120 1pv9_A) 0.6998 0.5833 4.1386 ( 0 12 21) 0 0.7997 0.6665 10 12 ( 4935 1p90_A) ( 5243 1q8i_A) 0.4995 0.1786 8.0713 ( 0 8 10) 0 0.5997 0.2143 10 28 ( 4935 1p90_A) ( 5447 1qtm_A) 0.4999 0.5553 5.7686 ( 0 7 10) 0 0.4999 0.5553 10 9 ( 4935 1p90_A) ( 5500 1qz5_A) 0.6999 0.6363 3.6651 ( 0 12 21) 0 0.6999 0.6363 10 11 ( 4935 1p90_A) ( 5501 1qz5_A) 0.3999 0.2222 7.6430 ( 0 3 6) 0 0.3999 0.2926 10 18 ( 4935 1p90_A) ( 5883 1t7p_A) 0.5998 0.4999 4.8335 ( 0 10 15) 0 0.6398 0.5841 10 12 ( 4935 1p90_A) ( 5906 1tgo_A) 0.6992 0.2593 6.0307 ( 0 15 21) 0 0.6992 0.3205 10 27 ( 4935 1p90_A) ( 6064 1uoc_A) 0.6998 0.4117 4.3913 ( 0 14 21) 0 0.7951 0.4702 10 17 ( 4935 1p90_A) ( 6249 1vhx_A) 0.7992 0.7992 5.0394 ( 0 19 28) 0 0.7992 0.7992 10 10 ( 4935 1p90_A) ( 6299 1vk0_A) 0.5998 0.4000 5.2120 ( 0 10 15) 0 0.5998 0.4000 10 15 ( 4935 1p90_A) ( 6323 1vrt_A) 0.6996 0.8738 5.0154 ( 0 9 21) 0 0.6996 0.8738 10 8 -------------------------------------------------------------------------------------------------------------------------