------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5120 1pv9_A) ( 247 1az9 ) 0.9981 0.8563 4.4722 ( 1 52 66) 0 0.9981 0.8563 12 14 ( 5120 1pv9_A) ( 345 1bco ) 0.5833 0.6363 3.8020 ( 0 10 21) 0 0.5833 0.6363 12 11 ( 5120 1pv9_A) ( 463 1bu6_O) 0.5833 0.3889 3.6948 ( 0 12 21) 0 0.5833 0.4229 12 18 ( 5120 1pv9_A) ( 464 1bu6_O) 0.5832 0.4117 4.7242 ( 0 18 21) 0 0.5832 0.4235 12 17 ( 5120 1pv9_A) ( 471 1bup_A) 0.4166 0.3125 6.4579 ( 0 8 10) 0 0.4665 0.4203 12 16 ( 5120 1pv9_A) ( 472 1bup_A) 0.4112 0.4112 11.6390 ( 1 9 10) 0 0.4112 0.4112 12 12 ( 5120 1pv9_A) ( 592 1chm_A) 0.9992 0.9992 3.3982 ( 1 53 66) 0 0.9992 0.9992 12 12 ( 5120 1pv9_A) ( 703 1cxq_A) 0.5833 0.6999 3.2946 ( 0 13 21) 0 0.5833 0.6999 12 10 ( 5120 1pv9_A) ( 713 1cza_N) 0.5831 0.6994 5.4638 ( 0 13 21) 0 0.6309 0.7214 12 10 ( 5120 1pv9_A) ( 714 1cza_N) 0.3332 0.2857 9.3790 ( 0 5 6) 0 0.5437 0.5019 12 14 ( 5120 1pv9_A) ( 934 1dt9_A) 0.4167 0.5555 4.1959 ( 0 6 10) 0 0.6663 0.8872 12 9 ( 5120 1pv9_A) ( 1021 1e3m_A) 0.3430 0.3769 4.6562 ( 1 4 10) 0 0.6623 0.8711 12 9 ( 5120 1pv9_A) ( 1033 1e4f_T) 0.5831 0.4999 5.5202 ( 0 14 21) 0 0.6640 0.5702 12 14 ( 5120 1pv9_A) ( 1034 1e4f_T) 0.3333 0.3077 7.8639 ( 0 3 6) 0 0.6640 0.6136 12 13 ( 5120 1pv9_A) ( 1191 1eke_A) 0.5775 0.4973 4.3990 ( 1 13 21) 0 0.5775 0.4973 12 14 ( 5120 1pv9_A) ( 1223 1eo1_A) 0.5833 0.8747 3.4946 ( 0 11 21) 0 0.6666 0.9993 12 8 ( 5120 1pv9_A) ( 1289 1ewq_A) 0.4166 0.4997 6.9818 ( 0 3 10) 0 0.6665 0.7997 12 10 ( 5120 1pv9_A) ( 1305 1exq_A) 0.5000 0.6665 4.1433 ( 0 8 15) 0 0.5000 0.6665 12 9 ( 5120 1pv9_A) ( 1522 1fjg_K) 0.5833 0.9992 3.7925 ( 0 11 21) 0 0.5833 0.9992 12 7 ( 5120 1pv9_A) ( 1656 1fxx_A) 0.6639 0.2580 4.6169 ( 1 19 28) 0 0.6644 0.2773 12 31 ( 5120 1pv9_A) ( 1778 1g99_A) 0.4167 0.4545 3.6343 ( 0 3 10) 0 0.4994 0.5445 12 11 ( 5120 1pv9_A) ( 1779 1g99_A) 0.7490 0.5623 5.8301 ( 0 25 36) 0 0.7490 0.5623 12 16 ( 5120 1pv9_A) ( 2218 1hjr_A) 0.3774 0.4201 9.2505 ( 1 5 10) 0 0.8307 0.9936 12 10 ( 5120 1pv9_A) ( 2296 1hux_A) 0.6660 0.4444 6.0315 ( 0 20 28) 0 0.6660 0.4444 12 18 ( 5120 1pv9_A) ( 2378 1i39_A) 0.5833 0.5384 4.0893 ( 0 11 21) 0 0.5833 0.5384 12 13 ( 5120 1pv9_A) ( 2483 1ig8_A) 0.5832 0.6362 4.7466 ( 0 13 21) 0 0.6611 0.7188 12 11 ( 5120 1pv9_A) ( 2484 1ig8_A) 0.3332 0.2666 8.6805 ( 0 6 6) 0 0.6603 0.5312 12 15 ( 5120 1pv9_A) ( 2491 1ih7_A) 0.4166 0.1852 5.4748 ( 0 7 10) 0 0.9884 0.4442 12 27 ( 5120 1pv9_A) ( 2619 1iv0_A) 0.5754 0.9062 2.7831 ( 1 12 21) 0 0.5754 0.9062 12 7 ( 5120 1pv9_A) ( 2733 1j54_A) 0.6312 0.6312 5.1390 ( 2 19 28) 0 0.6312 0.6312 12 12 ( 5120 1pv9_A) ( 2775 1j9a_A) 0.6660 0.5711 5.9307 ( 0 19 28) 0 0.6660 0.5711 12 14 ( 5120 1pv9_A) ( 2821 1jce_A) 0.5833 0.5833 3.2929 ( 0 12 21) 0 0.6633 0.6633 12 12 ( 5120 1pv9_A) ( 2822 1jce_A) 0.3333 0.2667 6.3923 ( 0 4 6) 0 0.6642 0.5325 12 15 ( 5120 1pv9_A) ( 2910 1jj2_M) 0.3333 0.3636 6.2361 ( 0 5 6) 0 0.3395 0.3636 12 11 ( 5120 1pv9_A) ( 2954 1jl1_A) 0.5831 0.6995 5.4121 ( 0 8 21) 0 0.5831 0.6995 12 10 ( 5120 1pv9_A) ( 3210 1k8k_A) 0.3329 0.2499 13.1553 ( 0 6 6) 0 0.3329 0.2499 12 16 ( 5120 1pv9_A) ( 3260 1kcf_A) 0.3333 0.3333 5.1221 ( 0 3 6) 0 0.8113 0.8113 12 12 ( 5120 1pv9_A) ( 3286 1kfs_A) 0.6241 0.6241 4.2542 ( 2 18 28) 0 0.6241 0.6241 12 12 ( 5120 1pv9_A) ( 3925 1mgt_A) 0.3333 0.6658 6.4990 ( 0 1 6) 0 0.3333 0.6658 12 6 ( 5120 1pv9_A) ( 4043 1mus_A) 0.4166 0.1852 4.7121 ( 0 4 10) 0 0.5826 0.3021 12 27 ( 5120 1pv9_A) ( 4057 1mwm_A) 0.5000 0.5454 4.4240 ( 0 10 15) 0 0.5000 0.5454 12 11 ( 5120 1pv9_A) ( 4058 1mwm_A) 0.6657 0.7258 6.6134 ( 0 18 28) 0 0.6657 0.7258 12 11 ( 5120 1pv9_A) ( 4191 1nbw_A) 0.3333 0.2222 5.6350 ( 0 1 6) 0 0.6241 0.4380 12 18 ( 5120 1pv9_A) ( 4193 1nbw_A) 0.3333 0.2500 4.6692 ( 0 3 6) 0 0.3333 0.2854 12 16 ( 5120 1pv9_A) ( 4281 1nk4_A) 0.5754 0.5754 3.7527 ( 1 12 21) 0 0.5754 0.5754 12 12 ( 5120 1pv9_A) ( 4391 1nu0_A) 0.5832 0.8741 4.6140 ( 0 13 21) 0 0.6664 0.9981 12 8 ( 5120 1pv9_A) ( 4469 1o13_A) 0.5775 0.8349 3.4758 ( 1 13 21) 0 0.6645 0.9843 12 8 ( 5120 1pv9_A) ( 4935 1p90_A) 0.5833 0.6998 4.1386 ( 0 12 21) 0 0.6665 0.7997 12 10 ( 5120 1pv9_A) ( 5120 1pv9_A) 1.0000 1.0000 0.0000 ( 0 57 66) 0 1.0000 1.0000 12 12 ( 5120 1pv9_A) ( 5243 1q8i_A) 0.3954 0.1782 4.3495 ( 1 6 10) 0 0.6664 0.2857 12 28 ( 5120 1pv9_A) ( 5447 1qtm_A) 0.3254 0.4146 13.5204 ( 1 6 6) 0 0.4922 0.6365 12 9 ( 5120 1pv9_A) ( 5500 1qz5_A) 0.6617 0.7196 3.2788 ( 1 16 28) 0 0.6617 0.7196 12 11 ( 5120 1pv9_A) ( 5501 1qz5_A) 0.5147 0.3773 4.5562 ( 2 13 21) 0 0.5147 0.3773 12 18 ( 5120 1pv9_A) ( 5883 1t7p_A) 0.4166 0.4166 6.3248 ( 0 4 10) 0 0.6622 0.6622 12 12 ( 5120 1pv9_A) ( 5906 1tgo_A) 0.4120 0.1851 6.1126 ( 1 9 10) 0 0.6663 0.3222 12 27 ( 5120 1pv9_A) ( 6064 1uoc_A) 0.3333 0.2353 5.0580 ( 0 4 6) 0 0.7482 0.5291 12 17 ( 5120 1pv9_A) ( 6249 1vhx_A) 0.3333 0.4000 4.7161 ( 0 5 6) 0 0.7495 0.8988 12 10 ( 5120 1pv9_A) ( 6299 1vk0_A) 0.4167 0.3333 4.1384 ( 0 6 10) 0 0.6144 0.5141 12 15 ( 5120 1pv9_A) ( 6323 1vrt_A) 0.5832 0.8741 4.6117 ( 0 7 21) 0 0.5832 0.8741 12 8 -------------------------------------------------------------------------------------------------------------------------