------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5243 1q8i_A) ( 247 1az9 ) 0.3214 0.6411 3.8501 ( 1 20 36) 0 0.3571 0.7133 28 14 ( 5243 1q8i_A) ( 345 1bco ) 0.2486 0.5406 4.6665 ( 2 13 21) 0 0.2486 0.5453 28 11 ( 5243 1q8i_A) ( 463 1bu6_O) 0.2140 0.3308 6.6869 ( 1 8 15) 0 0.2604 0.3481 28 18 ( 5243 1q8i_A) ( 464 1bu6_O) 0.2060 0.2879 6.7273 ( 3 10 15) 0 0.3645 0.5680 28 17 ( 5243 1q8i_A) ( 471 1bup_A) 0.2499 0.4364 6.5118 ( 1 14 21) 0 0.2788 0.4364 28 16 ( 5243 1q8i_A) ( 472 1bup_A) 0.2138 0.4717 6.4792 ( 1 7 15) 0 0.2344 0.4998 28 12 ( 5243 1q8i_A) ( 592 1chm_A) 0.2143 0.4999 5.2021 ( 0 10 15) 0 0.3214 0.7495 28 12 ( 5243 1q8i_A) ( 703 1cxq_A) 0.2026 0.2326 5.6272 ( 6 14 21) 0 0.2401 0.5985 28 10 ( 5243 1q8i_A) ( 713 1cza_N) 0.2498 0.6733 5.9334 ( 1 11 21) 0 0.2854 0.7561 28 10 ( 5243 1q8i_A) ( 714 1cza_N) 0.1659 0.2238 8.8078 ( 3 7 10) 0 0.2696 0.4330 28 14 ( 5243 1q8i_A) ( 934 1dt9_A) 0.2500 0.7762 6.1713 ( 0 13 21) 0 0.2500 0.7762 28 9 ( 5243 1q8i_A) ( 1021 1e3m_A) 0.2856 0.8679 4.7789 ( 1 16 28) 0 0.2856 0.8679 28 9 ( 5243 1q8i_A) ( 1033 1e4f_T) 0.2143 0.4285 5.9907 ( 0 7 15) 0 0.2369 0.4285 28 14 ( 5243 1q8i_A) ( 1034 1e4f_T) 0.2857 0.6149 6.2465 ( 0 17 28) 0 0.2857 0.6149 28 13 ( 5243 1q8i_A) ( 1191 1eke_A) 0.2813 0.4783 6.2956 ( 3 17 28) 0 0.2813 0.4783 28 14 ( 5243 1q8i_A) ( 1223 1eo1_A) 0.2500 0.8736 5.1906 ( 0 13 21) 0 0.2500 0.8736 28 8 ( 5243 1q8i_A) ( 1289 1ewq_A) 0.2857 0.7900 4.5143 ( 1 17 28) 0 0.2857 0.7900 28 10 ( 5243 1q8i_A) ( 1305 1exq_A) 0.2486 0.5882 6.1359 ( 2 13 21) 0 0.2486 0.6663 28 9 ( 5243 1q8i_A) ( 1522 1fjg_K) 0.2143 0.8569 3.5771 ( 0 7 15) 0 0.2143 0.8569 28 7 ( 5243 1q8i_A) ( 1656 1fxx_A) 0.1775 0.1606 5.3684 ( 2 9 10) 0 0.4964 0.4494 28 31 ( 5243 1q8i_A) ( 1778 1g99_A) 0.2628 0.3548 4.5969 ( 5 18 28) 0 0.2628 0.5584 28 11 ( 5243 1q8i_A) ( 1779 1g99_A) 0.1784 0.3095 5.9024 ( 1 7 10) 0 0.2857 0.4993 28 16 ( 5243 1q8i_A) ( 2218 1hjr_A) 0.3209 0.8289 6.1838 ( 2 23 36) 0 0.3209 0.8289 28 10 ( 5243 1q8i_A) ( 2296 1hux_A) 0.1786 0.2778 4.2929 ( 0 8 10) 0 0.3196 0.4840 28 18 ( 5243 1q8i_A) ( 2378 1i39_A) 0.2102 0.2472 6.7567 ( 6 15 21) 0 0.2390 0.3846 28 13 ( 5243 1q8i_A) ( 2483 1ig8_A) 0.2500 0.6361 5.1176 ( 0 10 21) 0 0.2666 0.6361 28 11 ( 5243 1q8i_A) ( 2484 1ig8_A) 0.2490 0.4459 7.0229 ( 2 14 21) 0 0.2500 0.4665 28 15 ( 5243 1q8i_A) ( 2491 1ih7_A) 0.8043 0.8315 3.5960 ( 14 212 253) 0 0.8043 0.8315 28 27 ( 5243 1q8i_A) ( 2619 1iv0_A) 0.2143 0.8570 2.8558 ( 0 7 15) 0 0.2143 0.8570 28 7 ( 5243 1q8i_A) ( 2733 1j54_A) 0.3541 0.6971 2.9891 ( 4 33 45) 0 0.3908 0.8097 28 12 ( 5243 1q8i_A) ( 2775 1j9a_A) 0.1785 0.3537 6.1784 ( 1 8 10) 0 0.3561 0.6854 28 14 ( 5243 1q8i_A) ( 2821 1jce_A) 0.2500 0.5832 4.2597 ( 0 10 21) 0 0.2500 0.5832 28 12 ( 5243 1q8i_A) ( 2822 1jce_A) 0.2500 0.4666 5.1855 ( 0 11 21) 0 0.2846 0.5096 28 15 ( 5243 1q8i_A) ( 2910 1jj2_M) 0.1579 0.1982 7.0565 ( 3 6 10) 0 0.2462 0.5452 28 11 ( 5243 1q8i_A) ( 2954 1jl1_A) 0.2228 0.2494 6.0889 ( 8 20 28) 0 0.2295 0.4996 28 10 ( 5243 1q8i_A) ( 3210 1k8k_A) 0.1429 0.2500 8.2811 ( 0 3 6) 0 0.2266 0.3249 28 16 ( 5243 1q8i_A) ( 3260 1kcf_A) 0.2857 0.6661 5.6723 ( 0 18 28) 0 0.2857 0.6661 28 12 ( 5243 1q8i_A) ( 3286 1kfs_A) 0.3921 0.8714 3.1500 ( 3 40 55) 0 0.4199 0.8714 28 12 ( 5243 1q8i_A) ( 3925 1mgt_A) 0.1579 0.1998 8.8261 ( 3 6 10) 0 0.1786 0.8318 28 6 ( 5243 1q8i_A) ( 4043 1mus_A) 0.1785 0.1850 11.1012 ( 1 8 10) 0 0.3647 0.3745 28 27 ( 5243 1q8i_A) ( 4057 1mwm_A) 0.2850 0.6650 5.7075 ( 2 18 28) 0 0.2850 0.6650 28 11 ( 5243 1q8i_A) ( 4058 1mwm_A) 0.1786 0.4543 7.5484 ( 0 3 10) 0 0.2856 0.7180 28 11 ( 5243 1q8i_A) ( 4191 1nbw_A) 0.2143 0.3333 4.2211 ( 0 7 15) 0 0.2750 0.3769 28 18 ( 5243 1q8i_A) ( 4193 1nbw_A) 0.1647 0.1808 7.3021 ( 6 11 15) 0 0.2695 0.4255 28 16 ( 5243 1q8i_A) ( 4281 1nk4_A) 0.3428 0.5266 4.3482 ( 6 33 45) 0 0.3696 0.7315 28 12 ( 5243 1q8i_A) ( 4391 1nu0_A) 0.2211 0.2793 6.6044 ( 5 14 21) 0 0.2267 0.7479 28 8 ( 5243 1q8i_A) ( 4469 1o13_A) 0.2500 0.8741 4.6195 ( 0 14 21) 0 0.2500 0.8741 28 8 ( 5243 1q8i_A) ( 4935 1p90_A) 0.1786 0.4995 8.0713 ( 0 8 10) 0 0.2143 0.5997 28 10 ( 5243 1q8i_A) ( 5120 1pv9_A) 0.1782 0.3954 4.3495 ( 1 6 10) 0 0.2857 0.6664 28 12 ( 5243 1q8i_A) ( 5243 1q8i_A) 1.0000 1.0000 0.0000 ( 0 325 378) 0 1.0000 1.0000 28 28 ( 5243 1q8i_A) ( 5447 1qtm_A) 0.2857 0.8880 4.5577 ( 0 18 28) 0 0.3214 0.9978 28 9 ( 5243 1q8i_A) ( 5500 1qz5_A) 0.2856 0.7169 5.5396 ( 1 15 28) 0 0.3019 0.7169 28 11 ( 5243 1q8i_A) ( 5501 1qz5_A) 0.2134 0.3258 4.3479 ( 1 6 15) 0 0.2355 0.3333 28 18 ( 5243 1q8i_A) ( 5883 1t7p_A) 0.3392 0.4990 6.0442 ( 6 31 45) 0 0.3392 0.6710 28 12 ( 5243 1q8i_A) ( 5906 1tgo_A) 0.8130 0.8418 4.0845 ( 11 202 253) 0 0.8130 0.8418 28 27 ( 5243 1q8i_A) ( 6064 1uoc_A) 0.2085 0.3023 5.6813 ( 3 11 15) 0 0.3878 0.5961 28 17 ( 5243 1q8i_A) ( 6249 1vhx_A) 0.2500 0.6997 4.5441 ( 0 13 21) 0 0.2500 0.6997 28 10 ( 5243 1q8i_A) ( 6299 1vk0_A) 0.2752 0.4061 4.4596 ( 4 18 28) 0 0.3895 0.6717 28 15 ( 5243 1q8i_A) ( 6323 1vrt_A) 0.2499 0.8208 5.6253 ( 1 12 21) 0 0.2499 0.8208 28 8 -------------------------------------------------------------------------------------------------------------------------