------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5447 1qtm_A) ( 247 1az9 ) 0.4443 0.2857 6.5466 ( 0 4 6) 0 0.4444 0.3473 9 14 ( 5447 1qtm_A) ( 345 1bco ) 0.5540 0.4540 9.3305 ( 0 4 10) 0 0.5540 0.4540 9 11 ( 5447 1qtm_A) ( 463 1bu6_O) 0.4441 0.2222 8.4255 ( 0 1 6) 0 0.4441 0.2447 9 18 ( 5447 1qtm_A) ( 464 1bu6_O) 0.4443 0.2353 6.2820 ( 0 1 6) 0 0.4443 0.2820 9 17 ( 5447 1qtm_A) ( 471 1bup_A) 0.5549 0.3125 7.6375 ( 0 5 10) 0 0.5549 0.3125 9 16 ( 5447 1qtm_A) ( 472 1bup_A) 0.4157 0.3257 9.5662 ( 1 6 6) 0 0.4157 0.3257 9 12 ( 5447 1qtm_A) ( 592 1chm_A) 0.4444 0.3333 5.9234 ( 0 3 6) 0 0.6659 0.4998 9 12 ( 5447 1qtm_A) ( 703 1cxq_A) 0.4437 0.3996 10.1897 ( 0 3 6) 0 0.4437 0.3996 9 10 ( 5447 1qtm_A) ( 713 1cza_N) 0.4443 0.3999 7.3462 ( 0 3 6) 0 0.4443 0.4200 9 10 ( 5447 1qtm_A) ( 714 1cza_N) 0.4156 0.2821 10.2984 ( 1 6 6) 0 0.4156 0.2821 9 14 ( 5447 1qtm_A) ( 934 1dt9_A) 0.5552 0.5552 6.6863 ( 0 6 10) 0 0.5552 0.5552 9 9 ( 5447 1qtm_A) ( 1021 1e3m_A) 0.6665 0.6665 4.2220 ( 0 6 15) 0 0.6665 0.6665 9 9 ( 5447 1qtm_A) ( 1033 1e4f_T) 0.4441 0.2857 8.4584 ( 0 3 6) 0 0.4441 0.2857 9 14 ( 5447 1qtm_A) ( 1034 1e4f_T) 0.4829 0.3696 10.3917 ( 1 6 10) 0 0.5542 0.3844 9 13 ( 5447 1qtm_A) ( 1191 1eke_A) 0.4440 0.2857 8.9526 ( 0 5 6) 0 0.4440 0.2857 9 14 ( 5447 1qtm_A) ( 1223 1eo1_A) 0.5555 0.6248 4.7302 ( 0 6 10) 0 0.5555 0.6248 9 8 ( 5447 1qtm_A) ( 1289 1ewq_A) 0.6664 0.5999 4.5769 ( 0 7 15) 0 0.6664 0.5999 9 10 ( 5447 1qtm_A) ( 1305 1exq_A) 0.4444 0.4444 5.8749 ( 0 5 6) 0 0.5108 0.5108 9 9 ( 5447 1qtm_A) ( 1522 1fjg_K) 0.4444 0.5713 4.6516 ( 0 1 6) 0 0.4444 0.5713 9 7 ( 5447 1qtm_A) ( 1656 1fxx_A) 0.8724 0.2580 4.2801 ( 1 17 28) 0 0.8724 0.2580 9 31 ( 5447 1qtm_A) ( 1778 1g99_A) 0.4442 0.3636 7.6666 ( 0 3 6) 0 0.4442 0.3990 9 11 ( 5447 1qtm_A) ( 1779 1g99_A) 0.3930 0.2462 11.5700 ( 1 5 6) 0 0.3930 0.2572 9 16 ( 5447 1qtm_A) ( 2218 1hjr_A) 0.7434 0.6789 7.8838 ( 1 12 21) 0 0.7434 0.6789 9 10 ( 5447 1qtm_A) ( 2296 1hux_A) 0.6039 0.3309 5.3977 ( 1 8 15) 0 0.6039 0.3309 9 18 ( 5447 1qtm_A) ( 2378 1i39_A) 0.4443 0.3077 6.2973 ( 0 4 6) 0 0.6235 0.4537 9 13 ( 5447 1qtm_A) ( 2483 1ig8_A) 0.5548 0.4543 7.8593 ( 0 2 10) 0 0.5548 0.4787 9 11 ( 5447 1qtm_A) ( 2484 1ig8_A) 0.1980 0.1867 11.0632 ( 3 6 6) 0 0.1980 0.1867 9 15 ( 5447 1qtm_A) ( 2491 1ih7_A) 0.8778 0.2962 4.3568 ( 1 19 28) 0 0.8778 0.3323 9 27 ( 5447 1qtm_A) ( 2619 1iv0_A) 0.4444 0.5713 4.4246 ( 0 1 6) 0 0.4444 0.5713 9 7 ( 5447 1qtm_A) ( 2733 1j54_A) 0.8723 0.6626 4.3694 ( 1 17 28) 0 0.8723 0.6626 9 12 ( 5447 1qtm_A) ( 2775 1j9a_A) 0.7602 0.4980 3.4040 ( 1 14 21) 0 0.7602 0.4980 9 14 ( 5447 1qtm_A) ( 2821 1jce_A) 0.3767 0.3429 8.5796 ( 1 4 10) 0 0.4433 0.3429 9 12 ( 5447 1qtm_A) ( 2822 1jce_A) 0.4397 0.3184 11.4287 ( 1 5 10) 0 0.5722 0.3898 9 15 ( 5447 1qtm_A) ( 2910 1jj2_M) 0.4444 0.3636 4.0812 ( 0 2 6) 0 0.6661 0.5453 9 11 ( 5447 1qtm_A) ( 2954 1jl1_A) 0.3935 0.3669 8.8236 ( 1 5 6) 0 0.3935 0.3669 9 10 ( 5447 1qtm_A) ( 3210 1k8k_A) 0.5266 0.3107 8.0600 ( 1 8 10) 0 0.5266 0.3107 9 16 ( 5447 1qtm_A) ( 3260 1kcf_A) 0.2650 0.2615 8.6035 ( 3 8 15) 0 0.3933 0.3185 9 12 ( 5447 1qtm_A) ( 3286 1kfs_A) 0.8784 0.6641 3.0646 ( 1 19 28) 0 0.8784 0.6641 9 12 ( 5447 1qtm_A) ( 3925 1mgt_A) 0.4444 0.6662 5.4564 ( 0 3 6) 0 0.4444 0.6662 9 6 ( 5447 1qtm_A) ( 4043 1mus_A) 0.4443 0.1481 7.2834 ( 0 3 6) 0 0.5547 0.2185 9 27 ( 5447 1qtm_A) ( 4057 1mwm_A) 0.4441 0.3635 8.5288 ( 0 4 6) 0 0.4444 0.3636 9 11 ( 5447 1qtm_A) ( 4058 1mwm_A) nil ( 5447 1qtm_A) ( 4191 1nbw_A) 0.4441 0.2222 8.4065 ( 0 2 6) 0 0.4444 0.2222 9 18 ( 5447 1qtm_A) ( 4193 1nbw_A) 0.4444 0.2500 5.9091 ( 0 2 6) 0 0.4444 0.2762 9 16 ( 5447 1qtm_A) ( 4281 1nk4_A) 0.8886 0.6666 3.3523 ( 0 20 28) 0 0.8886 0.6666 9 12 ( 5447 1qtm_A) ( 4391 1nu0_A) 0.6659 0.7487 6.1800 ( 0 9 15) 0 0.6659 0.7487 9 8 ( 5447 1qtm_A) ( 4469 1o13_A) 0.5553 0.6246 5.7029 ( 0 7 10) 0 0.5553 0.6246 9 8 ( 5447 1qtm_A) ( 4935 1p90_A) 0.5553 0.4999 5.7686 ( 0 7 10) 0 0.5553 0.4999 9 10 ( 5447 1qtm_A) ( 5120 1pv9_A) 0.4146 0.3254 13.5204 ( 1 6 6) 0 0.6365 0.4922 9 12 ( 5447 1qtm_A) ( 5243 1q8i_A) 0.8880 0.2857 4.5577 ( 0 18 28) 0 0.9978 0.3214 9 28 ( 5447 1qtm_A) ( 5447 1qtm_A) 1.0000 1.0000 0.0000 ( 0 29 36) 0 1.0000 1.0000 9 9 ( 5447 1qtm_A) ( 5500 1qz5_A) 0.4404 0.3989 8.4965 ( 1 5 10) 0 0.4435 0.3989 9 11 ( 5447 1qtm_A) ( 5501 1qz5_A) 0.4431 0.2222 11.8948 ( 0 6 6) 0 0.5108 0.2761 9 18 ( 5447 1qtm_A) ( 5883 1t7p_A) 0.6170 0.5286 4.0265 ( 2 14 21) 0 0.6170 0.5286 9 12 ( 5447 1qtm_A) ( 5906 1tgo_A) 0.4444 0.1481 2.9812 ( 0 3 6) 0 0.9049 0.3328 9 27 ( 5447 1qtm_A) ( 6064 1uoc_A) 0.7117 0.5030 3.6972 ( 3 23 36) 0 0.8754 0.5030 9 17 ( 5447 1qtm_A) ( 6249 1vhx_A) 0.5555 0.5000 4.2239 ( 0 6 10) 0 0.5555 0.5000 9 10 ( 5447 1qtm_A) ( 6299 1vk0_A) 0.8884 0.5333 3.8380 ( 0 15 28) 0 0.8884 0.5386 9 15 ( 5447 1qtm_A) ( 6323 1vrt_A) 0.4440 0.4992 9.1827 ( 0 1 6) 1 0.4440 0.4992 9 8 -------------------------------------------------------------------------------------------------------------------------