------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5501 1qz5_A) ( 247 1az9 ) 0.3021 0.3473 4.1705 ( 2 8 15) 0 0.4209 0.5031 18 14 ( 5501 1qz5_A) ( 345 1bco ) 0.2715 0.3988 9.5086 ( 1 5 10) 0 0.2715 0.3988 18 11 ( 5501 1qz5_A) ( 463 1bu6_O) 0.2714 0.2714 11.1661 ( 1 5 10) 0 0.2803 0.2803 18 18 ( 5501 1qz5_A) ( 464 1bu6_O) 0.4279 0.4491 6.3377 ( 2 14 28) 0 0.4443 0.4704 18 17 ( 5501 1qz5_A) ( 471 1bup_A) 0.3333 0.3750 3.5024 ( 0 11 15) 0 0.4401 0.4924 18 16 ( 5501 1qz5_A) ( 472 1bup_A) 0.6652 0.9894 4.7763 ( 2 46 66) 0 0.6652 0.9894 18 12 ( 5501 1qz5_A) ( 592 1chm_A) 0.2222 0.3333 7.7786 ( 0 0 6) 0 0.2286 0.3333 18 12 ( 5501 1qz5_A) ( 703 1cxq_A) 0.3333 0.5999 4.0847 ( 0 7 15) 0 0.3888 0.6988 18 10 ( 5501 1qz5_A) ( 713 1cza_N) 0.2222 0.3999 7.4659 ( 0 3 6) 0 0.2771 0.4886 18 10 ( 5501 1qz5_A) ( 714 1cza_N) 0.3818 0.4768 10.5553 ( 2 15 21) 0 0.3820 0.4774 18 14 ( 5501 1qz5_A) ( 934 1dt9_A) 0.2212 0.4161 5.4013 ( 1 6 6) 0 0.3121 0.4407 18 9 ( 5501 1qz5_A) ( 1021 1e3m_A) 0.2222 0.4440 9.2543 ( 0 0 6) 0 0.2222 0.4442 18 9 ( 5501 1qz5_A) ( 1033 1e4f_T) 0.3888 0.4998 6.4090 ( 0 14 21) 0 0.3888 0.4998 18 14 ( 5501 1qz5_A) ( 1034 1e4f_T) 0.5913 0.7622 5.2375 ( 4 40 55) 0 0.5913 0.7622 18 13 ( 5501 1qz5_A) ( 1191 1eke_A) 0.2222 0.2857 7.8200 ( 0 5 6) 0 0.4364 0.5452 18 14 ( 5501 1qz5_A) ( 1223 1eo1_A) 0.2222 0.4998 6.2952 ( 0 2 6) 0 0.3333 0.7461 18 8 ( 5501 1qz5_A) ( 1289 1ewq_A) 0.3481 0.4326 5.0193 ( 2 9 21) 0 0.3678 0.5999 18 10 ( 5501 1qz5_A) ( 1305 1exq_A) 0.2222 0.4437 10.4186 ( 0 3 6) 0 0.2222 0.4437 18 9 ( 5501 1qz5_A) ( 1522 1fjg_K) 0.3333 0.8565 4.4079 ( 0 6 15) 0 0.3333 0.8565 18 7 ( 5501 1qz5_A) ( 1656 1fxx_A) 0.3309 0.1934 4.3335 ( 1 8 15) 0 0.3309 0.2170 18 31 ( 5501 1qz5_A) ( 1778 1g99_A) 0.2222 0.3636 6.4530 ( 0 1 6) 0 0.2644 0.3636 18 11 ( 5501 1qz5_A) ( 1779 1g99_A) 0.3085 0.3212 6.4337 ( 4 14 21) 0 0.3926 0.4189 18 16 ( 5501 1qz5_A) ( 2218 1hjr_A) 0.2222 0.3990 12.8243 ( 0 2 6) 0 0.2222 0.3990 18 10 ( 5501 1qz5_A) ( 2296 1hux_A) 0.4996 0.4996 6.6674 ( 1 27 36) 0 0.4996 0.4996 18 18 ( 5501 1qz5_A) ( 2378 1i39_A) 0.2222 0.3077 6.6878 ( 0 5 6) 0 0.3889 0.5384 18 13 ( 5501 1qz5_A) ( 2483 1ig8_A) 0.3888 0.6359 5.9178 ( 0 13 21) 0 0.3888 0.6359 18 11 ( 5501 1qz5_A) ( 2484 1ig8_A) 0.2222 0.2667 6.7697 ( 0 6 6) 0 0.2778 0.3333 18 15 ( 5501 1qz5_A) ( 2491 1ih7_A) 0.3405 0.2510 6.5975 ( 4 17 21) 0 0.4435 0.2962 18 27 ( 5501 1qz5_A) ( 2619 1iv0_A) 0.1763 0.1993 7.9857 ( 1 2 6) 0 0.2204 0.2491 18 7 ( 5501 1qz5_A) ( 2733 1j54_A) 0.3651 0.4090 5.7810 ( 4 17 28) 0 0.3651 0.4090 18 12 ( 5501 1qz5_A) ( 2775 1j9a_A) 0.2761 0.3513 5.2968 ( 1 7 10) 0 0.2761 0.3513 18 14 ( 5501 1qz5_A) ( 2821 1jce_A) 0.4443 0.6658 6.5095 ( 0 16 28) 0 0.4443 0.6658 18 12 ( 5501 1qz5_A) ( 2822 1jce_A) 0.6181 0.6706 5.4215 ( 8 60 78) 0 0.6181 0.6706 18 15 ( 5501 1qz5_A) ( 2910 1jj2_M) 0.2222 0.3635 9.1577 ( 0 3 6) 0 0.3021 0.3752 18 11 ( 5501 1qz5_A) ( 2954 1jl1_A) 0.3292 0.5383 6.6657 ( 1 7 15) 0 0.3292 0.5383 18 10 ( 5501 1qz5_A) ( 3210 1k8k_A) 0.8693 0.9657 3.8404 ( 6 97 120) 0 0.8693 0.9657 18 16 ( 5501 1qz5_A) ( 3260 1kcf_A) 0.2420 0.2826 7.4091 ( 1 3 10) 0 0.3432 0.4054 18 12 ( 5501 1qz5_A) ( 3286 1kfs_A) 0.2942 0.3176 7.3234 ( 4 13 21) 0 0.2942 0.3332 18 12 ( 5501 1qz5_A) ( 3925 1mgt_A) 0.2222 0.6595 10.9933 ( 0 2 6) 0 0.2222 0.6595 18 6 ( 5501 1qz5_A) ( 4043 1mus_A) 0.4374 0.2953 10.2499 ( 2 18 28) 0 0.4374 0.2953 18 27 ( 5501 1qz5_A) ( 4057 1mwm_A) 0.3885 0.6324 6.8473 ( 1 17 21) 0 0.3885 0.6324 18 11 ( 5501 1qz5_A) ( 4058 1mwm_A) 0.4972 0.7882 4.9145 ( 2 26 36) 0 0.4972 0.7882 18 11 ( 5501 1qz5_A) ( 4191 1nbw_A) 0.2201 0.2201 9.2057 ( 1 5 6) 0 0.4402 0.4402 18 18 ( 5501 1qz5_A) ( 4193 1nbw_A) 0.5400 0.5762 4.6823 ( 6 41 55) 0 0.5400 0.5861 18 16 ( 5501 1qz5_A) ( 4281 1nk4_A) 0.2761 0.4045 5.5033 ( 1 7 10) 0 0.3525 0.4201 18 12 ( 5501 1qz5_A) ( 4391 1nu0_A) 0.3333 0.7494 5.1446 ( 0 7 15) 0 0.3333 0.7494 18 8 ( 5501 1qz5_A) ( 4469 1o13_A) 0.2222 0.4997 7.3537 ( 0 2 6) 0 0.2222 0.4997 18 8 ( 5501 1qz5_A) ( 4935 1p90_A) 0.2287 0.2615 6.3508 ( 3 8 10) 0 0.2926 0.3999 18 10 ( 5501 1qz5_A) ( 5120 1pv9_A) 0.3773 0.5147 4.5562 ( 2 13 21) 0 0.3773 0.5147 18 12 ( 5501 1qz5_A) ( 5243 1q8i_A) 0.3258 0.2134 4.3479 ( 1 6 15) 0 0.3333 0.2355 18 28 ( 5501 1qz5_A) ( 5447 1qtm_A) 0.2222 0.4431 11.8948 ( 0 6 6) 0 0.2761 0.5108 18 9 ( 5501 1qz5_A) ( 5500 1qz5_A) 0.3881 0.6275 3.2576 ( 1 13 21) 0 0.3881 0.6275 18 11 ( 5501 1qz5_A) ( 5501 1qz5_A) 1.0000 1.0000 0.0000 ( 0 126 153) 0 1.0000 1.0000 18 18 ( 5501 1qz5_A) ( 5883 1t7p_A) 0.2222 0.3331 10.4404 ( 0 0 6) 0 0.2781 0.3775 18 12 ( 5501 1qz5_A) ( 5906 1tgo_A) 0.2776 0.1852 13.1178 ( 0 6 10) 0 0.3258 0.2445 18 27 ( 5501 1qz5_A) ( 6064 1uoc_A) 0.2222 0.2353 7.7907 ( 0 1 6) 0 0.3936 0.4071 18 17 ( 5501 1qz5_A) ( 6249 1vhx_A) 0.2222 0.3994 11.3218 ( 0 4 6) 0 0.3021 0.3994 18 10 ( 5501 1qz5_A) ( 6299 1vk0_A) 0.2222 0.2667 6.8591 ( 0 4 6) 0 0.2636 0.3021 18 15 ( 5501 1qz5_A) ( 6323 1vrt_A) 0.3291 0.6071 6.9243 ( 1 7 15) 1 0.3291 0.6071 18 8 -------------------------------------------------------------------------------------------------------------------------