------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5883 1t7p_A) ( 247 1az9 ) 0.3333 0.2857 4.9295 ( 0 4 6) 0 0.7454 0.6407 12 14 ( 5883 1t7p_A) ( 345 1bco ) 0.3333 0.3635 8.2633 ( 0 3 6) 0 0.6584 0.7147 12 11 ( 5883 1t7p_A) ( 463 1bu6_O) 0.3333 0.2222 6.1093 ( 0 3 6) 0 0.4529 0.3258 12 18 ( 5883 1t7p_A) ( 464 1bu6_O) 0.3333 0.2353 7.9537 ( 0 3 6) 0 0.3333 0.2353 12 17 ( 5883 1t7p_A) ( 471 1bup_A) 0.3994 0.3624 6.1446 ( 4 17 21) 0 0.3994 0.3624 12 16 ( 5883 1t7p_A) ( 472 1bup_A) 0.3333 0.3333 6.9217 ( 0 4 6) 0 0.4823 0.4823 12 12 ( 5883 1t7p_A) ( 592 1chm_A) 0.4164 0.4164 8.8561 ( 0 5 10) 0 0.5804 0.5804 12 12 ( 5883 1t7p_A) ( 703 1cxq_A) 0.3333 0.4000 5.5655 ( 0 6 6) 0 0.5827 0.6983 12 10 ( 5883 1t7p_A) ( 713 1cza_N) 0.4999 0.5998 4.9956 ( 0 10 15) 0 0.4999 0.5998 12 10 ( 5883 1t7p_A) ( 714 1cza_N) 0.4820 0.4199 8.7238 ( 1 8 15) 0 0.4820 0.4199 12 14 ( 5883 1t7p_A) ( 934 1dt9_A) 0.5831 0.7767 5.6566 ( 0 15 21) 0 0.5831 0.7769 12 9 ( 5883 1t7p_A) ( 1021 1e3m_A) 0.5833 0.7776 3.4811 ( 0 11 21) 0 0.5833 0.7776 12 9 ( 5883 1t7p_A) ( 1033 1e4f_T) 0.3333 0.2857 7.0357 ( 0 3 6) 0 0.3977 0.3812 12 14 ( 5883 1t7p_A) ( 1034 1e4f_T) 0.3333 0.3077 6.0012 ( 0 4 6) 0 0.4171 0.4074 12 13 ( 5883 1t7p_A) ( 1191 1eke_A) 0.4999 0.4285 5.4850 ( 0 10 15) 0 0.4999 0.4285 12 14 ( 5883 1t7p_A) ( 1223 1eo1_A) 0.5147 0.6080 5.2957 ( 2 13 21) 0 0.5831 0.8731 12 8 ( 5883 1t7p_A) ( 1289 1ewq_A) 0.5833 0.6999 2.9977 ( 0 9 21) 0 0.5833 0.6999 12 10 ( 5883 1t7p_A) ( 1305 1exq_A) 0.3333 0.4443 6.4369 ( 0 6 6) 0 0.3333 0.4443 12 9 ( 5883 1t7p_A) ( 1522 1fjg_K) 0.4719 0.6383 4.7091 ( 1 7 15) 0 0.4719 0.7141 12 7 ( 5883 1t7p_A) ( 1656 1fxx_A) 0.8210 0.3225 4.8105 ( 2 34 45) 0 0.8210 0.3537 12 31 ( 5883 1t7p_A) ( 1778 1g99_A) 0.5775 0.6274 4.6448 ( 1 13 21) 0 0.5775 0.6274 12 11 ( 5883 1t7p_A) ( 1779 1g99_A) 0.3333 0.2500 7.1957 ( 0 3 6) 0 0.5798 0.4718 12 16 ( 5883 1t7p_A) ( 2218 1hjr_A) 0.6366 0.7329 6.3767 ( 2 20 28) 0 0.6366 0.7329 12 10 ( 5883 1t7p_A) ( 2296 1hux_A) 0.3429 0.2636 9.2238 ( 2 8 10) 0 0.4998 0.3333 12 18 ( 5883 1t7p_A) ( 2378 1i39_A) 0.5830 0.5382 6.0250 ( 0 15 21) 0 0.5830 0.5382 12 13 ( 5883 1t7p_A) ( 2483 1ig8_A) 0.4166 0.4545 4.5292 ( 0 6 10) 0 0.4166 0.4545 12 11 ( 5883 1t7p_A) ( 2484 1ig8_A) 0.3180 0.2613 15.1555 ( 1 5 6) 0 0.3180 0.2613 12 15 ( 5883 1t7p_A) ( 2491 1ih7_A) 0.8172 0.4051 3.9443 ( 4 42 55) 0 0.8172 0.4198 12 27 ( 5883 1t7p_A) ( 2619 1iv0_A) 0.3671 0.3954 3.8596 ( 2 8 15) 0 0.3671 0.5692 12 7 ( 5883 1t7p_A) ( 2733 1j54_A) 0.5396 0.5396 6.3289 ( 6 34 45) 0 0.5396 0.5396 12 12 ( 5883 1t7p_A) ( 2775 1j9a_A) 0.7473 0.6416 7.3864 ( 0 29 36) 0 0.8196 0.7078 12 14 ( 5883 1t7p_A) ( 2821 1jce_A) 0.3333 0.3333 7.9802 ( 0 0 6) 0 0.3333 0.3333 12 12 ( 5883 1t7p_A) ( 2822 1jce_A) 0.5798 0.4655 5.3981 ( 1 15 21) 0 0.5798 0.4655 12 15 ( 5883 1t7p_A) ( 2910 1jj2_M) 0.3333 0.3636 6.9587 ( 0 2 6) 0 0.4998 0.5452 12 11 ( 5883 1t7p_A) ( 2954 1jl1_A) 0.4166 0.4998 6.5824 ( 0 7 10) 0 0.4166 0.4998 12 10 ( 5883 1t7p_A) ( 3210 1k8k_A) 0.3332 0.2500 9.7019 ( 0 1 6) 0 0.3670 0.3250 12 16 ( 5883 1t7p_A) ( 3260 1kcf_A) 0.5751 0.5751 6.0332 ( 1 12 21) 0 0.5751 0.5751 12 12 ( 5883 1t7p_A) ( 3286 1kfs_A) 0.7907 0.7907 3.5594 ( 3 36 45) 0 0.7907 0.7907 12 12 ( 5883 1t7p_A) ( 3925 1mgt_A) 0.0998 0.0999 5.1300 ( 2 2 6) 0 0.0998 0.0999 12 6 ( 5883 1t7p_A) ( 4043 1mus_A) 0.5829 0.2593 6.4316 ( 0 15 21) 0 0.5829 0.2593 12 27 ( 5883 1t7p_A) ( 4057 1mwm_A) 0.5393 0.5729 6.4281 ( 2 15 21) 0 0.5393 0.5729 12 11 ( 5883 1t7p_A) ( 4058 1mwm_A) 0.3333 0.3636 5.6203 ( 0 4 6) 0 0.4279 0.4545 12 11 ( 5883 1t7p_A) ( 4191 1nbw_A) 0.4167 0.2778 4.1574 ( 0 5 10) 0 0.4167 0.2778 12 18 ( 5883 1t7p_A) ( 4193 1nbw_A) 0.3333 0.2500 7.0595 ( 0 2 6) 0 0.3333 0.2500 12 16 ( 5883 1t7p_A) ( 4281 1nk4_A) 0.8236 0.8236 4.2007 ( 2 36 45) 0 0.8236 0.8236 12 12 ( 5883 1t7p_A) ( 4391 1nu0_A) 0.6619 0.9659 6.6061 ( 1 17 28) 0 0.6619 0.9659 12 8 ( 5883 1t7p_A) ( 4469 1o13_A) 0.4166 0.6246 5.7622 ( 0 5 10) 0 0.5832 0.8737 12 8 ( 5883 1t7p_A) ( 4935 1p90_A) 0.4999 0.5998 4.8335 ( 0 10 15) 0 0.5841 0.6398 12 10 ( 5883 1t7p_A) ( 5120 1pv9_A) 0.5774 0.5774 4.8797 ( 1 13 21) 0 0.6622 0.6622 12 12 ( 5883 1t7p_A) ( 5243 1q8i_A) 0.6710 0.3199 2.5685 ( 3 26 36) 0 0.6710 0.3392 12 28 ( 5883 1t7p_A) ( 5447 1qtm_A) 0.5286 0.6170 4.0265 ( 2 14 21) 0 0.5286 0.6170 12 9 ( 5883 1t7p_A) ( 5500 1qz5_A) 0.3333 0.3636 6.6703 ( 0 3 6) 0 0.4045 0.4363 12 11 ( 5883 1t7p_A) ( 5501 1qz5_A) 0.3331 0.2222 10.4404 ( 0 0 6) 0 0.3775 0.2781 12 18 ( 5883 1t7p_A) ( 5883 1t7p_A) 1.0000 1.0000 0.0000 ( 0 55 66) 0 1.0000 1.0000 12 12 ( 5883 1t7p_A) ( 5906 1tgo_A) 0.8197 0.3701 4.5844 ( 2 33 45) 0 0.8197 0.3718 12 27 ( 5883 1t7p_A) ( 6064 1uoc_A) 0.7351 0.5267 3.7546 ( 2 28 36) 0 0.7384 0.5406 12 17 ( 5883 1t7p_A) ( 6249 1vhx_A) 0.5798 0.6914 5.4762 ( 1 15 21) 0 0.5798 0.6914 12 10 ( 5883 1t7p_A) ( 6299 1vk0_A) 0.8199 0.6622 4.1371 ( 2 33 45) 0 0.8199 0.6622 12 15 ( 5883 1t7p_A) ( 6323 1vrt_A) 0.4167 0.6249 4.2811 ( 0 5 10) 0 0.4167 0.6249 12 8 -------------------------------------------------------------------------------------------------------------------------