------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6249 1vhx_A) ( 247 1az9 ) 0.4999 0.3571 5.0889 ( 0 7 10) 0 0.8962 0.6421 10 14 ( 6249 1vhx_A) ( 345 1bco ) 0.8820 0.8068 8.8204 ( 1 23 36) 0 0.8820 0.8068 10 11 ( 6249 1vhx_A) ( 463 1bu6_O) 0.6998 0.3889 3.9151 ( 0 12 21) 0 0.6998 0.3889 10 18 ( 6249 1vhx_A) ( 464 1bu6_O) 0.3998 0.2353 7.8771 ( 0 4 6) 0 0.7980 0.4769 10 17 ( 6249 1vhx_A) ( 471 1bup_A) 0.6994 0.4374 5.6408 ( 0 13 21) 0 0.6994 0.4374 10 16 ( 6249 1vhx_A) ( 472 1bup_A) 0.5998 0.4999 4.7827 ( 0 8 15) 0 0.5999 0.4999 10 12 ( 6249 1vhx_A) ( 592 1chm_A) 0.7990 0.6663 5.2811 ( 0 19 28) 0 0.8971 0.7488 10 12 ( 6249 1vhx_A) ( 703 1cxq_A) 0.8830 0.8830 8.8926 ( 1 25 36) 0 0.8830 0.8830 10 10 ( 6249 1vhx_A) ( 713 1cza_N) 0.6990 0.6990 6.2783 ( 0 13 21) 0 0.6990 0.6990 10 10 ( 6249 1vhx_A) ( 714 1cza_N) 0.7842 0.5684 9.1583 ( 1 18 28) 0 0.7842 0.5684 10 14 ( 6249 1vhx_A) ( 934 1dt9_A) 0.7989 0.8870 5.4840 ( 0 20 28) 0 0.7989 0.8870 10 9 ( 6249 1vhx_A) ( 1021 1e3m_A) 0.7995 0.8881 4.4602 ( 0 13 28) 0 0.7995 0.8881 10 9 ( 6249 1vhx_A) ( 1033 1e4f_T) 0.7918 0.5699 6.3969 ( 1 19 28) 0 0.7918 0.5699 10 14 ( 6249 1vhx_A) ( 1034 1e4f_T) 0.6990 0.5382 6.2552 ( 0 13 21) 0 0.6990 0.5382 10 13 ( 6249 1vhx_A) ( 1191 1eke_A) 0.7896 0.5694 6.9627 ( 1 18 28) 0 0.7896 0.5694 10 14 ( 6249 1vhx_A) ( 1223 1eo1_A) 0.7993 0.9979 4.8731 ( 0 19 28) 0 0.7993 0.9979 10 8 ( 6249 1vhx_A) ( 1289 1ewq_A) 0.7996 0.7996 4.1082 ( 0 15 28) 0 0.7996 0.7996 10 10 ( 6249 1vhx_A) ( 1305 1exq_A) 0.5997 0.6661 5.7972 ( 0 8 15) 0 0.7898 0.8718 10 9 ( 6249 1vhx_A) ( 1522 1fjg_K) 0.6999 0.9994 3.5431 ( 0 11 21) 0 0.6999 0.9994 10 7 ( 6249 1vhx_A) ( 1656 1fxx_A) 0.8945 0.2903 5.3143 ( 1 25 36) 0 0.8945 0.2903 10 31 ( 6249 1vhx_A) ( 1778 1g99_A) 0.7000 0.6363 2.9503 ( 0 12 21) 0 0.7000 0.6363 10 11 ( 6249 1vhx_A) ( 1779 1g99_A) 0.4717 0.3095 6.6167 ( 1 7 10) 0 0.8980 0.5623 10 16 ( 6249 1vhx_A) ( 2218 1hjr_A) 0.7994 0.7994 4.6760 ( 0 18 28) 0 0.7994 0.7994 10 10 ( 6249 1vhx_A) ( 2296 1hux_A) 0.6999 0.3889 3.1941 ( 0 14 21) 0 0.6999 0.4280 10 18 ( 6249 1vhx_A) ( 2378 1i39_A) 0.7910 0.6129 6.9768 ( 1 19 28) 0 0.7910 0.6129 10 13 ( 6249 1vhx_A) ( 2483 1ig8_A) 0.6995 0.6361 5.2835 ( 0 12 21) 0 0.6995 0.6361 10 11 ( 6249 1vhx_A) ( 2484 1ig8_A) 0.7826 0.5309 9.0952 ( 1 17 28) 0 0.7826 0.5309 10 15 ( 6249 1vhx_A) ( 2491 1ih7_A) 0.9568 0.3700 7.1925 ( 2 32 45) 0 0.9568 0.3700 10 27 ( 6249 1vhx_A) ( 2619 1iv0_A) 0.6998 0.9989 4.1167 ( 0 11 21) 0 0.6998 0.9989 10 7 ( 6249 1vhx_A) ( 2733 1j54_A) 0.7992 0.6663 5.0970 ( 0 17 28) 0 0.7992 0.6663 10 12 ( 6249 1vhx_A) ( 2775 1j9a_A) 0.7989 0.5712 5.4518 ( 0 19 28) 0 0.7989 0.5712 10 14 ( 6249 1vhx_A) ( 2821 1jce_A) 0.6999 0.5833 3.6606 ( 0 12 21) 0 0.6999 0.5833 10 12 ( 6249 1vhx_A) ( 2822 1jce_A) 0.7930 0.5324 6.3824 ( 1 20 28) 0 0.7930 0.5324 10 15 ( 6249 1vhx_A) ( 2910 1jj2_M) 0.5998 0.5453 5.3556 ( 0 9 15) 0 0.5998 0.5453 10 11 ( 6249 1vhx_A) ( 2954 1jl1_A) 0.3998 0.3998 7.9858 ( 0 5 6) 0 0.3998 0.3998 10 10 ( 6249 1vhx_A) ( 3210 1k8k_A) 0.3997 0.2500 9.5773 ( 0 3 6) 0 0.4809 0.3570 10 16 ( 6249 1vhx_A) ( 3260 1kcf_A) 0.8953 0.7481 6.7736 ( 0 26 36) 0 0.8953 0.7481 10 12 ( 6249 1vhx_A) ( 3286 1kfs_A) 0.7080 0.6239 5.5585 ( 2 18 28) 0 0.7080 0.6239 10 12 ( 6249 1vhx_A) ( 3925 1mgt_A) 0.1654 0.1665 10.3778 ( 3 5 6) 0 0.2412 0.2487 10 6 ( 6249 1vhx_A) ( 4043 1mus_A) 0.8829 0.3332 8.7897 ( 1 24 36) 0 0.8829 0.3332 10 27 ( 6249 1vhx_A) ( 4057 1mwm_A) 0.6998 0.6362 4.2639 ( 0 13 21) 0 0.6998 0.6362 10 11 ( 6249 1vhx_A) ( 4058 1mwm_A) 0.4000 0.3636 3.8025 ( 0 2 6) 0 0.6983 0.6353 10 11 ( 6249 1vhx_A) ( 4191 1nbw_A) 0.6998 0.3889 4.2521 ( 0 12 21) 0 0.6998 0.3889 10 18 ( 6249 1vhx_A) ( 4193 1nbw_A) 0.7202 0.4905 7.4922 ( 2 19 28) 0 0.7202 0.4905 10 16 ( 6249 1vhx_A) ( 4281 1nk4_A) 0.7911 0.6631 5.6927 ( 1 18 28) 0 0.7911 0.6631 10 12 ( 6249 1vhx_A) ( 4391 1nu0_A) 0.7999 0.9996 3.1417 ( 0 19 28) 0 0.7999 0.9996 10 8 ( 6249 1vhx_A) ( 4469 1o13_A) 0.7994 0.9982 4.6453 ( 0 19 28) 0 0.7994 0.9982 10 8 ( 6249 1vhx_A) ( 4935 1p90_A) 0.7992 0.7992 5.0394 ( 0 19 28) 0 0.7992 0.7992 10 10 ( 6249 1vhx_A) ( 5120 1pv9_A) 0.4000 0.3333 4.7161 ( 0 5 6) 0 0.8988 0.7495 10 12 ( 6249 1vhx_A) ( 5243 1q8i_A) 0.6997 0.2500 4.5441 ( 0 13 21) 0 0.6997 0.2500 10 28 ( 6249 1vhx_A) ( 5447 1qtm_A) 0.5000 0.5555 4.2239 ( 0 6 10) 0 0.5000 0.5555 10 9 ( 6249 1vhx_A) ( 5500 1qz5_A) 0.6998 0.6362 4.2507 ( 0 11 21) 0 0.6998 0.6362 10 11 ( 6249 1vhx_A) ( 5501 1qz5_A) 0.3994 0.2222 11.3218 ( 0 4 6) 0 0.3994 0.3021 10 18 ( 6249 1vhx_A) ( 5883 1t7p_A) 0.6914 0.5798 5.4762 ( 1 15 21) 0 0.6914 0.5798 10 12 ( 6249 1vhx_A) ( 5906 1tgo_A) 0.7985 0.2963 5.8943 ( 0 20 28) 0 0.7985 0.2963 10 27 ( 6249 1vhx_A) ( 6064 1uoc_A) 0.7917 0.4700 4.8000 ( 1 18 28) 0 0.7917 0.4700 10 17 ( 6249 1vhx_A) ( 6249 1vhx_A) 1.0000 1.0000 0.0000 ( 0 37 45) 0 1.0000 1.0000 10 10 ( 6249 1vhx_A) ( 6299 1vk0_A) 0.6995 0.4666 5.4122 ( 0 14 21) 0 0.7920 0.5323 10 15 ( 6249 1vhx_A) ( 6323 1vrt_A) 0.6995 0.8734 5.3287 ( 0 11 21) 0 0.6995 0.8734 10 8 -------------------------------------------------------------------------------------------------------------------------