------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6299 1vk0_A) ( 247 1az9 ) 0.3333 0.3571 7.1270 ( 0 6 10) 0 0.5467 0.5721 15 14 ( 6299 1vk0_A) ( 345 1bco ) 0.2667 0.3636 6.5484 ( 0 1 6) 0 0.4203 0.4920 15 11 ( 6299 1vk0_A) ( 463 1bu6_O) 0.3333 0.2778 6.8118 ( 0 3 10) 0 0.3850 0.3525 15 18 ( 6299 1vk0_A) ( 464 1bu6_O) 0.2667 0.2353 7.3910 ( 0 4 6) 0 0.4950 0.4486 15 17 ( 6299 1vk0_A) ( 471 1bup_A) 0.2667 0.2500 6.9344 ( 0 2 6) 0 0.3612 0.3558 15 16 ( 6299 1vk0_A) ( 472 1bup_A) 0.3328 0.4152 13.3512 ( 0 4 10) 0 0.3328 0.4152 15 12 ( 6299 1vk0_A) ( 592 1chm_A) 0.3332 0.4163 9.1747 ( 0 8 10) 0 0.5730 0.6630 15 12 ( 6299 1vk0_A) ( 703 1cxq_A) 0.2667 0.3999 7.3839 ( 0 4 6) 0 0.3309 0.4825 15 10 ( 6299 1vk0_A) ( 713 1cza_N) 0.4399 0.5654 5.8093 ( 2 13 21) 0 0.4399 0.5728 15 10 ( 6299 1vk0_A) ( 714 1cza_N) 0.3333 0.3571 3.9940 ( 0 6 10) 0 0.3360 0.3571 15 14 ( 6299 1vk0_A) ( 934 1dt9_A) 0.4666 0.7763 6.0762 ( 0 15 21) 0 0.4666 0.7763 15 9 ( 6299 1vk0_A) ( 1021 1e3m_A) 0.4666 0.7769 5.2706 ( 0 13 21) 0 0.4666 0.7769 15 9 ( 6299 1vk0_A) ( 1033 1e4f_T) 0.3329 0.3566 12.5510 ( 0 8 10) 0 0.3903 0.3974 15 14 ( 6299 1vk0_A) ( 1034 1e4f_T) 0.4640 0.5330 5.0634 ( 1 12 21) 0 0.4640 0.5330 15 13 ( 6299 1vk0_A) ( 1191 1eke_A) 0.4665 0.4997 6.9495 ( 0 12 21) 0 0.4665 0.4997 15 14 ( 6299 1vk0_A) ( 1223 1eo1_A) 0.4665 0.8723 6.0996 ( 0 13 21) 0 0.4665 0.8723 15 8 ( 6299 1vk0_A) ( 1289 1ewq_A) 0.5038 0.6498 4.7079 ( 2 15 28) 0 0.5038 0.6632 15 10 ( 6299 1vk0_A) ( 1305 1exq_A) 0.2666 0.4439 9.4242 ( 0 4 6) 0 0.2666 0.4439 15 9 ( 6299 1vk0_A) ( 1522 1fjg_K) 0.4000 0.8559 5.1325 ( 0 7 15) 0 0.4000 0.8559 15 7 ( 6299 1vk0_A) ( 1656 1fxx_A) 0.5976 0.3202 4.3474 ( 4 31 45) 0 0.5976 0.3202 15 31 ( 6299 1vk0_A) ( 1778 1g99_A) 0.3333 0.4542 8.0818 ( 0 3 10) 0 0.5316 0.7193 15 11 ( 6299 1vk0_A) ( 1779 1g99_A) 0.2666 0.2500 8.3923 ( 0 3 6) 0 0.3021 0.2887 15 16 ( 6299 1vk0_A) ( 2218 1hjr_A) 0.4816 0.5827 5.9556 ( 3 19 28) 0 0.4816 0.6890 15 10 ( 6299 1vk0_A) ( 2296 1hux_A) 0.4000 0.3333 5.1135 ( 0 10 15) 0 0.4000 0.3333 15 18 ( 6299 1vk0_A) ( 2378 1i39_A) 0.2667 0.3077 6.8264 ( 0 4 6) 0 0.3996 0.4607 15 13 ( 6299 1vk0_A) ( 2483 1ig8_A) 0.4647 0.6272 5.3903 ( 1 13 21) 0 0.4647 0.6272 15 11 ( 6299 1vk0_A) ( 2484 1ig8_A) 0.4638 0.4638 7.4582 ( 1 12 21) 0 0.4638 0.4638 15 15 ( 6299 1vk0_A) ( 2491 1ih7_A) 0.3333 0.1852 5.9135 ( 0 8 10) 0 0.6633 0.4323 15 27 ( 6299 1vk0_A) ( 2619 1iv0_A) 0.3333 0.7141 4.0571 ( 0 5 10) 0 0.4316 0.7141 15 7 ( 6299 1vk0_A) ( 2733 1j54_A) 0.6610 0.8164 4.0130 ( 2 31 45) 0 0.6610 0.8164 15 12 ( 6299 1vk0_A) ( 2775 1j9a_A) 0.5262 0.5614 3.4901 ( 2 22 28) 0 0.6550 0.6981 15 14 ( 6299 1vk0_A) ( 2821 1jce_A) 0.2667 0.3333 6.5627 ( 0 4 6) 0 0.3961 0.4885 15 12 ( 6299 1vk0_A) ( 2822 1jce_A) 0.4000 0.4000 4.8743 ( 0 7 15) 0 0.4000 0.4000 15 15 ( 6299 1vk0_A) ( 2910 1jj2_M) 0.2666 0.3636 7.5558 ( 0 0 6) 0 0.4721 0.6359 15 11 ( 6299 1vk0_A) ( 2954 1jl1_A) 0.2666 0.3995 10.5285 ( 0 3 6) 0 0.2666 0.3997 15 10 ( 6299 1vk0_A) ( 3210 1k8k_A) 0.2666 0.2500 7.9447 ( 0 1 6) 0 0.2666 0.2500 15 16 ( 6299 1vk0_A) ( 3260 1kcf_A) 0.3332 0.4164 8.9056 ( 0 7 10) 0 0.4269 0.4447 15 12 ( 6299 1vk0_A) ( 3286 1kfs_A) 0.6882 0.8020 3.0262 ( 4 40 55) 0 0.6882 0.8020 15 12 ( 6299 1vk0_A) ( 3925 1mgt_A) 0.2362 0.2970 8.6819 ( 1 3 6) 0 0.2362 0.2970 15 6 ( 6299 1vk0_A) ( 4043 1mus_A) 0.3588 0.2941 8.0454 ( 7 26 36) 0 0.4059 0.2941 15 27 ( 6299 1vk0_A) ( 4057 1mwm_A) 0.4666 0.6360 5.4962 ( 0 13 21) 0 0.4666 0.6360 15 11 ( 6299 1vk0_A) ( 4058 1mwm_A) 0.2666 0.3634 9.5984 ( 0 3 6) 0 0.2666 0.3635 15 11 ( 6299 1vk0_A) ( 4191 1nbw_A) 0.3333 0.2778 4.7269 ( 0 5 10) 0 0.3333 0.2778 15 18 ( 6299 1vk0_A) ( 4193 1nbw_A) 0.2667 0.2500 5.4076 ( 0 4 6) 0 0.3333 0.3125 15 16 ( 6299 1vk0_A) ( 4281 1nk4_A) 0.6796 0.7840 3.8654 ( 4 38 55) 0 0.6796 0.7840 15 12 ( 6299 1vk0_A) ( 4391 1nu0_A) 0.4665 0.8717 6.4223 ( 0 14 21) 0 0.4665 0.8717 15 8 ( 6299 1vk0_A) ( 4469 1o13_A) 0.4000 0.7496 4.4433 ( 0 11 15) 0 0.4000 0.7496 15 8 ( 6299 1vk0_A) ( 4935 1p90_A) 0.4000 0.5998 5.2120 ( 0 10 15) 0 0.4000 0.5998 15 10 ( 6299 1vk0_A) ( 5120 1pv9_A) 0.3333 0.4167 4.1384 ( 0 6 10) 0 0.5141 0.6144 15 12 ( 6299 1vk0_A) ( 5243 1q8i_A) 0.3328 0.1785 13.3662 ( 0 8 10) 0 0.6717 0.3895 15 28 ( 6299 1vk0_A) ( 5447 1qtm_A) 0.5386 0.6632 4.3726 ( 3 21 36) 0 0.5386 0.8884 15 9 ( 6299 1vk0_A) ( 5500 1qz5_A) 0.3824 0.4788 5.0153 ( 1 6 15) 0 0.3998 0.5444 15 11 ( 6299 1vk0_A) ( 5501 1qz5_A) 0.2667 0.2222 6.8591 ( 0 4 6) 0 0.3021 0.2636 15 18 ( 6299 1vk0_A) ( 5883 1t7p_A) 0.6622 0.8199 4.1371 ( 2 33 45) 0 0.6622 0.8199 15 12 ( 6299 1vk0_A) ( 5906 1tgo_A) 0.3671 0.2201 2.8222 ( 2 10 15) 0 0.7720 0.4428 15 27 ( 6299 1vk0_A) ( 6064 1uoc_A) 0.2667 0.2353 6.3900 ( 0 3 6) 0 0.4781 0.4712 15 17 ( 6299 1vk0_A) ( 6249 1vhx_A) 0.4666 0.6995 5.4122 ( 0 14 21) 0 0.4666 0.6995 15 10 ( 6299 1vk0_A) ( 6299 1vk0_A) 1.0000 1.0000 0.0000 ( 0 75 105) 0 1.0000 1.0000 15 15 ( 6299 1vk0_A) ( 6323 1vrt_A) 0.3975 0.6997 5.3137 ( 1 10 15) 0 0.4610 0.7758 15 8 -------------------------------------------------------------------------------------------------------------------------