------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6323 1vrt_A) ( 247 1az9 ) 0.8738 0.4999 4.9900 ( 0 6 21) 0 0.8738 0.4999 8 14 ( 6323 1vrt_A) ( 345 1bco ) 0.8741 0.6362 4.6395 ( 0 9 21) 0 0.8741 0.6362 8 11 ( 6323 1vrt_A) ( 463 1bu6_O) 0.8348 0.3881 3.6891 ( 1 13 21) 0 0.8348 0.3881 8 18 ( 6323 1vrt_A) ( 464 1bu6_O) 0.4995 0.2353 7.9701 ( 0 1 6) 0 0.4995 0.2887 8 17 ( 6323 1vrt_A) ( 471 1bup_A) 0.4992 0.2500 9.0956 ( 0 0 6) 0 0.6999 0.3732 8 16 ( 6323 1vrt_A) ( 472 1bup_A) 0.4974 0.3330 12.2232 ( 0 3 6) 0 0.4974 0.3330 8 12 ( 6323 1vrt_A) ( 592 1chm_A) 0.5126 0.3949 10.8821 ( 1 6 10) 0 0.6249 0.4972 8 12 ( 6323 1vrt_A) ( 703 1cxq_A) 0.8742 0.6998 4.4327 ( 0 9 21) 0 0.8742 0.6998 8 10 ( 6323 1vrt_A) ( 713 1cza_N) 0.7777 0.6624 6.5573 ( 1 10 21) 0 0.7777 0.6624 8 10 ( 6323 1vrt_A) ( 714 1cza_N) 0.9905 0.5708 7.1098 ( 0 13 28) 0 0.9905 0.5708 8 14 ( 6323 1vrt_A) ( 934 1dt9_A) 0.8435 0.7597 4.9311 ( 1 14 21) 0 0.8435 0.7597 8 9 ( 6323 1vrt_A) ( 1021 1e3m_A) 0.8743 0.7774 4.2806 ( 0 7 21) 0 0.8743 0.7774 8 9 ( 6323 1vrt_A) ( 1033 1e4f_T) 0.7488 0.4285 6.0663 ( 0 8 15) 0 0.7488 0.4718 8 14 ( 6323 1vrt_A) ( 1034 1e4f_T) 0.7494 0.4615 5.1071 ( 0 8 15) 0 0.7494 0.5223 8 13 ( 6323 1vrt_A) ( 1191 1eke_A) 0.8342 0.4972 4.8698 ( 1 13 21) 0 0.8342 0.4972 8 14 ( 6323 1vrt_A) ( 1223 1eo1_A) 0.8744 0.8744 4.1765 ( 0 10 21) 0 0.8744 0.8744 8 8 ( 6323 1vrt_A) ( 1289 1ewq_A) 0.9976 0.7992 4.9942 ( 0 14 28) 0 0.9976 0.7992 8 10 ( 6323 1vrt_A) ( 1305 1exq_A) 0.6248 0.5554 5.0418 ( 0 4 10) 0 0.6998 0.6370 8 9 ( 6323 1vrt_A) ( 1522 1fjg_K) 0.8744 0.9989 4.1288 ( 0 9 21) 0 0.8744 0.9989 8 7 ( 6323 1vrt_A) ( 1656 1fxx_A) 0.7496 0.1935 4.7148 ( 0 6 15) 0 0.7496 0.2218 8 31 ( 6323 1vrt_A) ( 1778 1g99_A) 0.8736 0.6361 5.2206 ( 0 12 21) 0 0.8736 0.6361 8 11 ( 6323 1vrt_A) ( 1779 1g99_A) 0.8216 0.4356 4.5000 ( 1 12 21) 0 0.8216 0.4356 8 16 ( 6323 1vrt_A) ( 2218 1hjr_A) 0.8716 0.6989 6.4729 ( 0 7 21) 0 0.8716 0.6989 8 10 ( 6323 1vrt_A) ( 2296 1hux_A) 0.7493 0.3333 5.2345 ( 0 8 15) 0 0.7493 0.3333 8 18 ( 6323 1vrt_A) ( 2378 1i39_A) 0.8346 0.5345 4.2618 ( 1 13 21) 0 0.8346 0.5345 8 13 ( 6323 1vrt_A) ( 2483 1ig8_A) 0.8340 0.6273 5.1448 ( 1 13 21) 0 0.8340 0.6273 8 11 ( 6323 1vrt_A) ( 2484 1ig8_A) 0.2910 0.2362 6.9157 ( 1 3 6) 0 0.4363 0.3543 8 15 ( 6323 1vrt_A) ( 2491 1ih7_A) 0.7003 0.2585 5.0341 ( 1 8 21) 0 0.7003 0.2585 8 27 ( 6323 1vrt_A) ( 2619 1iv0_A) 0.8744 0.9989 4.1304 ( 0 11 21) 0 0.8744 0.9989 8 7 ( 6323 1vrt_A) ( 2733 1j54_A) 0.6249 0.4167 3.7219 ( 0 5 10) 0 0.6249 0.4718 8 12 ( 6323 1vrt_A) ( 2775 1j9a_A) 0.8724 0.4998 6.0492 ( 0 9 21) 0 0.8724 0.4998 8 14 ( 6323 1vrt_A) ( 2821 1jce_A) 0.7789 0.5674 5.1435 ( 1 10 21) 0 0.7789 0.5674 8 12 ( 6323 1vrt_A) ( 2822 1jce_A) 0.8343 0.4647 4.8258 ( 1 13 21) 0 0.8343 0.4647 8 15 ( 6323 1vrt_A) ( 2910 1jj2_M) 0.7494 0.5453 5.1740 ( 0 7 15) 0 0.7494 0.6014 8 11 ( 6323 1vrt_A) ( 2954 1jl1_A) 0.9705 0.7899 4.7242 ( 1 17 28) 0 0.9705 0.7899 8 10 ( 6323 1vrt_A) ( 3210 1k8k_A) 0.4949 0.2498 14.4525 ( 0 3 6) 0 0.5142 0.3250 8 16 ( 6323 1vrt_A) ( 3260 1kcf_A) 0.8721 0.5830 6.2093 ( 0 6 21) 0 0.8721 0.5830 8 12 ( 6323 1vrt_A) ( 3286 1kfs_A) 0.6249 0.4166 4.4299 ( 0 5 10) 0 0.6249 0.4166 8 12 ( 6323 1vrt_A) ( 3925 1mgt_A) nil ( 6323 1vrt_A) ( 4043 1mus_A) 0.8721 0.2593 6.2020 ( 0 10 21) 0 0.8721 0.2593 8 27 ( 6323 1vrt_A) ( 4057 1mwm_A) 0.8347 0.6274 3.9901 ( 1 13 21) 0 0.8744 0.6362 8 11 ( 6323 1vrt_A) ( 4058 1mwm_A) 0.6072 0.5040 6.7447 ( 1 7 15) 1 0.6072 0.5040 8 11 ( 6323 1vrt_A) ( 4191 1nbw_A) 0.8742 0.3889 4.4415 ( 0 12 21) 0 0.8742 0.3889 8 18 ( 6323 1vrt_A) ( 4193 1nbw_A) 0.8736 0.4375 5.2058 ( 0 8 21) 0 0.8736 0.4375 8 16 ( 6323 1vrt_A) ( 4281 1nk4_A) 0.6250 0.4167 3.3855 ( 0 5 10) 0 0.6250 0.4718 8 12 ( 6323 1vrt_A) ( 4391 1nu0_A) 0.8712 0.8712 6.6419 ( 0 10 21) 0 0.8712 0.8712 8 8 ( 6323 1vrt_A) ( 4469 1o13_A) 0.8738 0.8738 4.9658 ( 0 12 21) 0 0.8738 0.8738 8 8 ( 6323 1vrt_A) ( 4935 1p90_A) 0.8738 0.6996 5.0154 ( 0 9 21) 0 0.8738 0.6996 8 10 ( 6323 1vrt_A) ( 5120 1pv9_A) 0.8741 0.5832 4.6117 ( 0 7 21) 0 0.8741 0.5832 8 12 ( 6323 1vrt_A) ( 5243 1q8i_A) 0.8208 0.2499 5.6253 ( 1 12 21) 0 0.8208 0.2499 8 28 ( 6323 1vrt_A) ( 5447 1qtm_A) 0.4999 0.4444 5.7687 ( 0 2 6) 0 0.4999 0.4444 8 9 ( 6323 1vrt_A) ( 5500 1qz5_A) 0.8746 0.6363 3.8516 ( 0 11 21) 0 0.8746 0.6363 8 11 ( 6323 1vrt_A) ( 5501 1qz5_A) 0.3665 0.2172 12.2478 ( 1 4 6) 0 0.6071 0.3291 8 18 ( 6323 1vrt_A) ( 5883 1t7p_A) 0.6249 0.4167 4.2811 ( 0 5 10) 0 0.6486 0.4822 8 12 ( 6323 1vrt_A) ( 5906 1tgo_A) 0.7495 0.2222 4.7974 ( 0 7 15) 0 0.7495 0.2427 8 27 ( 6323 1vrt_A) ( 6064 1uoc_A) 0.4999 0.2353 5.1010 ( 0 3 6) 0 0.6072 0.3605 8 17 ( 6323 1vrt_A) ( 6249 1vhx_A) 0.8734 0.6995 5.3287 ( 0 11 21) 0 0.8734 0.6995 8 10 ( 6323 1vrt_A) ( 6299 1vk0_A) 0.6997 0.3975 5.3137 ( 1 10 15) 0 0.7758 0.4610 8 15 ( 6323 1vrt_A) ( 6323 1vrt_A) 1.0000 1.0000 0.0000 ( 0 18 28) 0 1.0000 1.0000 8 8 -------------------------------------------------------------------------------------------------------------------------