------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [703, 247]: Comparing 1cxq_A and 1az9, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 35 (17 H + 18 S) secondary structure elements in 1az9, of which 14 satisfy the size requirements. 1.66700 [ 2.33346] ((1 . 7) (4 . 10) (5 . 11) (6 . 12) (8 . 13) (9 . 15)) 4.488 {0/9:15} B:0 2.00284 [ 2.80104] ((1 . 2) (6 . 7) (8 . 9) (9 . 10) (11 . 13)) 8.788 {0/7:10} B:0 2.50046 [ 3.50017] ((3 . 6) (4 . 7) (5 . 9) (6 . 10)) 6.580 {0/4:6} B:0 2.50077 [ 3.50028] ((5 . 11) (8 . 13) (9 . 15) (10 . 16)) 7.489 {0/3:6} B:0 4.14506 [ 4.48938] ((2 . 1) (3 . 2) (5 . 5) (10 . 11)) 9.833 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.5999 [and 1/min{score2}: 0.4285] [703, 345]: Comparing 1cxq_A and 1bco, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 27 (10 H + 17 S) secondary structure elements in 1bco, of which 11 satisfy the size requirements. 1.11121 [ 1.22229] ((1 . 1) (3 . 4) (4 . 5) (5 . 6) (6 . 8) (8 . 9) (9 . 10) (10 . 12) (11 . 15)) 2.414 {0/26:36} B:0 2.00035 [ 2.20026] ((1 . 5) (8 . 9) (9 . 10) (10 . 12) (11 . 15)) 5.198 {0/8:10} B:0 2.50026 [ 2.75020] ((5 . 9) (6 . 10) (10 . 12) (11 . 15)) 5.731 {0/6:6} B:0 2.50032 [ 2.75024] ((1 . 5) (6 . 10) (10 . 12) (11 . 15)) 5.998 {0/5:6} B:0 2.72410 [ 2.81162] ((1 . 4) (8 . 9) (9 . 10) (10 . 12) (11 . 15)) 4.107 {2/8:10} B:0 SIMILARITY (1/min{score1}): 0.8999 [and 1/min{score2}: 0.8181] [703, 463]: Comparing 1cxq_A and 1bu6_O, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 42 (18 H + 24 S) secondary structure elements in 1bu6_O, of which 18 satisfy the size requirements. 2.00010 [ 3.60002] ((1 . 1) (3 . 2) (4 . 3) (5 . 5) (6 . 7)) 3.791 {0/5:10} B:0 2.50026 [ 4.50004] ((1 . 1) (3 . 2) (4 . 3) (8 . 5)) 5.716 {0/2:6} B:0 2.50033 [ 4.50006] ((1 . 9) (2 . 10) (5 . 12) (6 . 14)) 6.075 {0/5:6} B:0 2.50035 [ 4.50006] ((3 . 8) (4 . 9) (8 . 12) (9 . 14)) 6.137 {0/3:6} B:0 2.51340 [ 4.50231] ((1 . 3) (5 . 5) (9 . 9) (10 . 11)) 15.336 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.5000 [and 1/min{score2}: 0.3085] [703, 464]: Comparing 1cxq_A and 1bu6_O, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 42 (18 H + 24 S) secondary structure elements in 1bu6_O, of which 17 satisfy the size requirements. 1.67110 [ 2.83424] ((1 . 26) (3 . 32) (4 . 33) (5 . 34) (6 . 35) (9 . 38)) 8.573 {0/11:15} B:0 2.00315 [ 3.40064] ((1 . 33) (5 . 34) (6 . 35) (8 . 37) (9 . 38)) 9.023 {0/7:10} B:0 2.50048 [ 4.25010] ((3 . 32) (4 . 33) (5 . 34) (9 . 35)) 6.655 {0/5:6} B:0 2.50079 [ 4.25016] ((3 . 32) (4 . 33) (8 . 34) (9 . 35)) 7.535 {0/5:6} B:0 2.50083 [ 4.25017] ((5 . 25) (6 . 26) (10 . 30) (11 . 31)) 7.635 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.5984 [and 1/min{score2}: 0.3528] [703, 471]: Comparing 1cxq_A and 1bup_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 34 (15 H + 19 S) secondary structure elements in 1bup_A, of which 16 satisfy the size requirements. 2.00217 [ 3.20053] ((4 . 14) (5 . 15) (6 . 16) (8 . 17) (9 . 18)) 8.221 {0/7:10} B:0 2.00423 [ 3.20104] ((1 . 12) (5 . 15) (6 . 16) (8 . 17) (9 . 18)) 9.715 {0/7:10} B:0 2.07687 [ 3.21969] ((1 . 2) (3 . 5) (4 . 6) (8 . 11) (10 . 15)) 10.181 {1/8:10} B:0 2.12140 [ 3.23197] ((3 . 13) (5 . 15) (6 . 16) (8 . 17) (9 . 18)) 8.720 {1/7:10} B:0 2.50038 [ 4.00009] ((1 . 1) (4 . 5) (6 . 16) (9 . 18)) 6.284 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.4995 [and 1/min{score2}: 0.3570] [703, 472]: Comparing 1cxq_A and 1bup_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 34 (15 H + 19 S) secondary structure elements in 1bup_A, of which 12 satisfy the size requirements. 1.66710 [ 2.00025] ((1 . 20) (3 . 21) (4 . 22) (5 . 29) (6 . 31) (8 . 33)) 4.789 {0/9:15} B:0 2.00021 [ 2.40012] ((1 . 20) (3 . 21) (5 . 29) (6 . 31) (8 . 33)) 4.574 {0/5:10} B:0 2.00549 [ 2.40318] ((1 . 20) (3 . 21) (4 . 22) (8 . 24) (11 . 29)) 10.368 {0/6:10} B:0 2.50060 [ 3.00035] ((6 . 20) (9 . 22) (10 . 23) (11 . 24)) 7.037 {0/4:6} B:0 2.97344 [ 3.31049] ((5 . 29) (6 . 31) (8 . 33) (10 . 34)) 7.355 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.5998 [and 1/min{score2}: 0.4999] [703, 592]: Comparing 1cxq_A and 1chm_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 35 (14 H + 21 S) secondary structure elements in 1chm_A, of which 12 satisfy the size requirements. 1.43208 [ 1.71632] ((1 . 3) (3 . 5) (4 . 6) (5 . 8) (6 . 11) (8 . 12) (9 . 13)) 7.205 {0/15:21} B:0 2.00126 [ 2.40073] ((1 . 3) (3 . 5) (4 . 6) (5 . 8) (6 . 9)) 7.166 {0/5:10} B:0 2.50008 [ 3.00005] ((1 . 6) (4 . 9) (5 . 10) (6 . 11)) 4.225 {0/3:6} B:0 2.50009 [ 3.00005] ((1 . 6) (5 . 10) (6 . 11) (9 . 13)) 4.378 {0/4:6} B:0 2.72523 [ 3.13906] ((2 . 2) (3 . 3) (4 . 5) (10 . 12)) 8.903 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.6983 [and 1/min{score2}: 0.5826] [703, 703]: Comparing 1cxq_A and 1cxq_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (8 . 8) (9 . 9) (10 . 10) (11 . 11)) 0.000 {0/38:45} B:0 4.14565 [ 4.14565] ((5 . 2) (6 . 3) (10 . 5) (11 . 8)) 11.937 {2/5:6} B:0 4.14565 [ 4.14565] ((2 . 5) (3 . 6) (5 . 10) (8 . 11)) 11.937 {2/5:6} B:0 5.07704 [ 5.07704] ((3 . 1) (4 . 3) (8 . 5) (10 . 8)) 12.356 {2/4:6} B:0 5.07704 [ 5.07704] ((1 . 3) (3 . 4) (5 . 8) (8 . 10)) 12.356 {2/4:6} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [703, 713]: Comparing 1cxq_A and 1cza_N, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 62 (36 H + 26 S) secondary structure elements in 1cza_N, of which 10 satisfy the size requirements. 1.43043 [ 1.43043] ((1 . 5) (3 . 6) (4 . 7) (5 . 9) (6 . 10) (8 . 13) (9 . 14)) 6.140 {0/15:21} B:0 1.66773 [ 1.66773] ((1 . 5) (3 . 6) (4 . 7) (5 . 9) (6 . 10) (9 . 14)) 5.992 {0/11:15} B:0 2.00096 [ 2.00096] ((1 . 5) (3 . 6) (4 . 7) (5 . 9) (9 . 10)) 6.702 {0/7:10} B:0 2.00097 [ 2.00097] ((1 . 5) (3 . 6) (4 . 7) (8 . 9) (9 . 10)) 6.719 {0/7:10} B:0 2.50072 [ 2.50072] ((1 . 7) (5 . 9) (6 . 10) (8 . 13)) 7.366 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6991 [and 1/min{score2}: 0.6991] [703, 714]: Comparing 1cxq_A and 1cza_N, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 62 (36 H + 26 S) secondary structure elements in 1cza_N, of which 14 satisfy the size requirements. 1.67345 [ 2.33582] ((4 . 19) (5 . 27) (6 . 28) (8 . 30) (9 . 31) (10 . 32)) 9.539 {0/10:15} B:0 2.88369 [ 2.95344] ((1 . 16) (3 . 17) (4 . 19) (5 . 22) (6 . 28) (8 . 30) (9 . 31) (10 . 32)) 8.224 {6/21:28} B:0 2.90201 [ 3.01616] ((3 . 16) (4 . 19) (5 . 27) (6 . 28) (8 . 30) (9 . 31) (10 . 32)) 9.421 {4/14:21} B:0 4.14505 [ 4.48937] ((6 . 17) (9 . 19) (10 . 21) (11 . 23)) 9.781 {2/5:6} B:0 5.03188 [ 5.11881] ((2 . 26) (5 . 27) (6 . 28) (8 . 30) (9 . 31)) 8.831 {3/6:10} B:0 SIMILARITY (1/min{score1}): 0.5976 [and 1/min{score2}: 0.4281] [703, 934]: Comparing 1cxq_A and 1dt9_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 26 (13 H + 13 S) secondary structure elements in 1dt9_A, of which 9 satisfy the size requirements. 2.00167 [ 1.80228] ((1 . 10) (3 . 11) (4 . 12) (8 . 14) (11 . 18)) 7.690 {0/5:10} B:0 3.51462 [ 3.50977] ((1 . 10) (3 . 11) (4 . 12) (5 . 14) (6 . 15) (8 . 16) (9 . 17) (10 . 18)) 8.545 {7/20:28} B:0 5.07708 [ 5.05122] ((3 . 10) (4 . 11) (8 . 14) (10 . 16)) 12.559 {2/4:6} B:0 5.07740 [ 5.05155] ((3 . 10) (4 . 11) (8 . 13) (10 . 16)) 13.753 {2/4:6} B:0 6.04479 [ 6.02952] ((1 . 11) (3 . 12) (5 . 14) (10 . 18)) 8.171 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.4996 [and 1/min{score2}: 0.5549] [703, 1021]: Comparing 1cxq_A and 1e3m_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 60 (33 H + 27 S) secondary structure elements in 1e3m_A, of which 9 satisfy the size requirements. 2.50031 [ 2.25043] ((4 . 12) (5 . 15) (8 . 17) (11 . 22)) 5.991 {0/2:6} B:0 2.50136 [ 2.25187] ((5 . 15) (6 . 16) (9 . 18) (11 . 22)) 8.647 {0/4:6} B:0 2.50405 [ 2.25555] ((6 . 14) (8 . 15) (9 . 16) (11 . 22)) 11.358 {0/3:6} B:0 2.72667 [ 2.54333] ((3 . 14) (4 . 16) (8 . 20) (10 . 22)) 10.871 {1/5:6} B:0 4.14532 [ 4.09735] ((3 . 16) (4 . 18) (8 . 20) (10 . 22)) 10.928 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.4531 [and 1/min{score2}: 0.4667] [703, 1033]: Comparing 1cxq_A and 1e4f_T, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 36 (14 H + 22 S) secondary structure elements in 1e4f_T, of which 14 satisfy the size requirements. 1.43054 [ 2.00072] ((1 . 1) (3 . 2) (4 . 3) (5 . 6) (6 . 7) (8 . 16) (9 . 17)) 6.230 {0/15:21} B:0 2.00084 [ 2.80031] ((1 . 1) (3 . 2) (4 . 3) (5 . 6) (9 . 7)) 6.482 {0/7:10} B:0 2.00139 [ 2.80051] ((1 . 1) (3 . 2) (4 . 3) (8 . 6) (9 . 7)) 7.355 {0/7:10} B:0 2.50346 [ 3.50126] ((4 . 7) (8 . 10) (9 . 11) (11 . 16)) 10.914 {0/4:6} B:0 2.97504 [ 3.70945] ((2 . 10) (3 . 11) (4 . 13) (8 . 18)) 10.868 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.6990 [and 1/min{score2}: 0.4998] [703, 1034]: Comparing 1cxq_A and 1e4f_T, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 36 (14 H + 22 S) secondary structure elements in 1e4f_T, of which 13 satisfy the size requirements. 2.97321 [ 3.50341] ((6 . 20) (9 . 22) (10 . 23) (11 . 24)) 6.013 {1/4:6} B:0 3.57160 [ 3.91627] ((1 . 20) (3 . 21) (4 . 22) (5 . 23)) 10.767 {1/3:6} B:0 4.14471 [ 4.37871] ((4 . 29) (5 . 31) (6 . 32) (10 . 36)) 7.230 {2/5:6} B:0 4.14471 [ 4.37872] ((2 . 19) (3 . 20) (4 . 21) (10 . 27)) 7.309 {2/5:6} B:0 4.14768 [ 4.38123] ((1 . 22) (5 . 24) (8 . 27) (10 . 31)) 15.536 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.4000 [and 1/min{score2}: 0.3077] [703, 1191]: Comparing 1cxq_A and 1eke_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 14 (9 H + 5 S) secondary structure elements in 1eke_A, of which 14 satisfy the size requirements. 1.25047 [ 1.75017] ((1 . 1) (3 . 2) (4 . 5) (5 . 7) (6 . 8) (8 . 9) (9 . 10) (10 . 12)) 3.942 {0/19:28} B:0 2.00052 [ 2.80019] ((1 . 5) (5 . 7) (8 . 9) (9 . 10) (10 . 12)) 5.754 {0/8:10} B:0 2.50070 [ 3.50025] ((4 . 8) (5 . 9) (6 . 10) (10 . 12)) 7.311 {0/4:6} B:0 2.50096 [ 3.50035] ((1 . 1) (3 . 2) (6 . 5) (11 . 9)) 7.911 {0/2:6} B:0 2.50528 [ 3.50193] ((1 . 1) (6 . 5) (8 . 7) (11 . 9)) 12.138 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.8595 [and 1/min{score2}: 0.6347] [703, 1223]: Comparing 1cxq_A and 1eo1_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 9 (3 H + 6 S) secondary structure elements in 1eo1_A, of which 8 satisfy the size requirements. 1.42902 [ 1.14373] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (8 . 6) (9 . 7)) 4.299 {0/11:21} B:0 2.50100 [ 2.00196] ((4 . 1) (8 . 4) (9 . 5) (11 . 8)) 8.009 {0/3:6} B:0 3.89943 [ 3.89334] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (8 . 6) (9 . 7) (10 . 8)) 7.529 {7/18:28} B:0 5.07643 [ 5.03177] ((1 . 2) (3 . 3) (5 . 4) (10 . 8)) 7.061 {2/4:6} B:0 5.07645 [ 5.03179] ((1 . 3) (2 . 4) (4 . 7) (5 . 8)) 7.514 {3/6:6} B:0 SIMILARITY (1/min{score1}): 0.6998 [and 1/min{score2}: 0.8743] [703, 1289]: Comparing 1cxq_A and 1ewq_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 56 (30 H + 26 S) secondary structure elements in 1ewq_A, of which 10 satisfy the size requirements. 1.42873 [ 1.42873] ((1 . 13) (3 . 14) (4 . 15) (5 . 16) (6 . 17) (8 . 19) (9 . 20)) 3.341 {0/10:21} B:0 2.50104 [ 2.50104] ((4 . 13) (8 . 16) (9 . 17) (11 . 21)) 8.084 {0/2:6} B:0 2.50154 [ 2.50154] ((1 . 17) (4 . 20) (5 . 21) (8 . 24)) 8.915 {0/3:6} B:0 2.50163 [ 2.50163] ((1 . 15) (4 . 17) (5 . 19) (8 . 21)) 9.043 {0/3:6} B:0 2.50421 [ 2.50421] ((6 . 15) (8 . 16) (9 . 17) (11 . 21)) 11.468 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.6999 [and 1/min{score2}: 0.6999] [703, 1305]: Comparing 1cxq_A and 1exq_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 12 (7 H + 5 S) secondary structure elements in 1exq_A, of which 9 satisfy the size requirements. 1.25010 [ 1.12513] ((1 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (8 . 8) (10 . 10) (11 . 11)) 2.664 {0/22:28} B:0 2.50043 [ 2.25059] ((1 . 3) (3 . 4) (8 . 10) (11 . 12)) 6.485 {0/4:6} B:0 5.07690 [ 5.05103] ((1 . 3) (3 . 4) (5 . 8) (8 . 10)) 11.654 {2/4:6} B:0 7.52308 [ 7.51518] ((6 . 4) (8 . 5) (9 . 6) (11 . 10)) 8.216 {3/4:6} B:0 2.00008 [ 1.80010] ((5 . 5) (8 . 8) (9 . 6) (10 . 10) (11 . 11)) 3.551 {0/9:10} B:1 SIMILARITY (1/min{score1}): 0.7999 [and 1/min{score2}: 0.8888] [703, 1522]: Comparing 1cxq_A and 1fjg_K, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 9 (4 H + 5 S) secondary structure elements in 1fjg_K, of which 7 satisfy the size requirements. 1.42909 [ 1.00152] ((1 . 1) (3 . 2) (4 . 3) (5 . 5) (6 . 6) (8 . 7) (9 . 8)) 4.470 {0/10:21} B:0 2.00018 [ 1.40051] ((1 . 1) (3 . 2) (4 . 3) (5 . 5) (9 . 6)) 4.384 {0/4:10} B:0 2.00033 [ 1.40098] ((1 . 3) (5 . 5) (6 . 6) (8 . 7) (9 . 8)) 5.148 {0/5:10} B:0 2.50136 [ 1.75396] ((1 . 3) (4 . 6) (5 . 7) (6 . 8)) 8.643 {0/3:6} B:0 5.07692 [ 5.01924] ((3 . 1) (4 . 2) (8 . 5) (10 . 7)) 11.794 {1/2:6} B:0 SIMILARITY (1/min{score1}): 0.6997 [and 1/min{score2}: 0.9985] [703, 1656]: Comparing 1cxq_A and 1fxx_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 37 (27 H + 10 S) secondary structure elements in 1fxx_A, of which 31 satisfy the size requirements. 1.43399 [ 4.42875] ((1 . 1) (3 . 2) (4 . 3) (5 . 6) (6 . 7) (9 . 10) (11 . 13)) 8.032 {0/11:21} B:0 1.66708 [ 5.16668] ((1 . 1) (3 . 2) (4 . 3) (6 . 7) (8 . 8) (9 . 10)) 4.720 {0/10:15} B:0 2.50002 [ 7.75000] ((1 . 1) (3 . 2) (4 . 3) (9 . 7)) 3.022 {0/3:6} B:0 2.50031 [ 7.75001] ((5 . 6) (6 . 7) (8 . 8) (9 . 10)) 5.950 {0/3:6} B:0 2.50077 [ 7.75003] ((1 . 19) (3 . 20) (6 . 23) (10 . 27)) 7.490 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6974 [and 1/min{score2}: 0.2314] [703, 1778]: Comparing 1cxq_A and 1g99_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 33 (19 H + 14 S) secondary structure elements in 1g99_A, of which 11 satisfy the size requirements. 2.00019 [ 2.20014] ((1 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 8)) 4.458 {0/7:10} B:0 2.50056 [ 2.75042] ((3 . 1) (4 . 2) (6 . 4) (11 . 10)) 6.915 {0/2:6} B:0 2.50512 [ 2.75385] ((6 . 5) (8 . 6) (10 . 10) (11 . 11)) 12.044 {0/4:6} B:0 2.73028 [ 2.92997] ((1 . 5) (4 . 8) (5 . 10) (10 . 13)) 13.496 {1/5:6} B:0 5.07646 [ 5.11076] ((1 . 8) (2 . 10) (4 . 12) (5 . 13)) 7.745 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.6997 [and 1/min{score2}: 0.6362] [703, 1779]: Comparing 1cxq_A and 1g99_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 33 (19 H + 14 S) secondary structure elements in 1g99_A, of which 16 satisfy the size requirements. 2.50071 [ 4.00017] ((5 . 25) (6 . 26) (8 . 28) (10 . 33)) 7.332 {0/4:6} B:0 2.50165 [ 4.00040] ((2 . 16) (3 . 18) (4 . 19) (11 . 25)) 9.073 {0/3:6} B:0 2.50750 [ 4.00184] ((3 . 18) (4 . 19) (8 . 21) (10 . 24)) 13.253 {0/3:6} B:0 2.72623 [ 4.06175] ((5 . 16) (9 . 20) (10 . 21) (11 . 22)) 10.375 {1/5:6} B:0 2.72794 [ 4.06226] ((2 . 24) (5 . 25) (6 . 26) (10 . 33)) 11.991 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.7486 [and 1/min{score2}: 0.4944] [703, 2218]: Comparing 1cxq_A and 1hjr_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1hjr_A, of which 10 satisfy the size requirements. 2.00357 [ 2.00357] ((5 . 4) (6 . 5) (8 . 6) (9 . 7) (11 . 10)) 9.307 {0/7:10} B:0 2.20823 [ 2.20823] ((4 . 1) (5 . 6) (6 . 7) (10 . 9) (11 . 10)) 7.988 {1/6:10} B:0 2.50075 [ 2.50075] ((4 . 1) (5 . 6) (10 . 9) (11 . 10)) 7.458 {0/2:6} B:0 2.72498 [ 2.72498] ((5 . 6) (6 . 7) (10 . 9) (11 . 10)) 8.405 {1/5:6} B:0 2.72570 [ 2.72570] ((5 . 6) (9 . 7) (10 . 9) (11 . 10)) 9.676 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.4991 [and 1/min{score2}: 0.4991] [703, 2296]: Comparing 1cxq_A and 1hux_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 21 (11 H + 10 S) secondary structure elements in 1hux_A, of which 18 satisfy the size requirements. 1.66694 [ 3.00005] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 6) (9 . 7)) 4.278 {0/10:15} B:0 2.04721 [ 3.60836] ((5 . 8) (6 . 9) (9 . 11) (10 . 12) (11 . 13)) 7.201 {1/9:10} B:0 2.50050 [ 4.50009] ((8 . 8) (9 . 9) (10 . 12) (11 . 13)) 6.732 {0/6:6} B:0 2.50209 [ 4.50036] ((6 . 3) (8 . 4) (9 . 6) (10 . 8)) 9.617 {0/3:6} B:0 2.50608 [ 4.50105] ((4 . 6) (6 . 9) (10 . 12) (11 . 13)) 12.576 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.5999 [and 1/min{score2}: 0.3333] [703, 2378]: Comparing 1cxq_A and 1i39_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 14 (9 H + 5 S) secondary structure elements in 1i39_A, of which 13 satisfy the size requirements. 1.25055 [ 1.62525] ((1 . 1) (3 . 2) (4 . 5) (5 . 7) (6 . 8) (8 . 9) (9 . 10) (10 . 12)) 4.096 {0/20:28} B:0 1.66748 [ 2.16704] ((1 . 5) (5 . 7) (6 . 8) (8 . 9) (9 . 10) (10 . 12)) 5.602 {0/10:15} B:0 2.50055 [ 3.25025] ((1 . 1) (3 . 2) (6 . 5) (11 . 9)) 6.900 {0/3:6} B:0 2.72452 [ 3.36099] ((4 . 1) (8 . 4) (10 . 6) (11 . 7)) 7.095 {1/5:6} B:0 4.14497 [ 4.37894] ((3 . 1) (8 . 4) (10 . 7) (11 . 9)) 9.363 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.7996 [and 1/min{score2}: 0.6153] [703, 2483]: Comparing 1cxq_A and 1ig8_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 32 (19 H + 13 S) secondary structure elements in 1ig8_A, of which 11 satisfy the size requirements. 1.42938 [ 1.57203] ((1 . 4) (3 . 5) (4 . 6) (5 . 8) (6 . 9) (8 . 12) (9 . 13)) 4.983 {0/14:21} B:0 2.00049 [ 2.20037] ((1 . 4) (3 . 5) (4 . 6) (5 . 8) (9 . 9)) 5.671 {0/7:10} B:0 2.50025 [ 2.75019] ((1 . 6) (5 . 8) (6 . 9) (8 . 12)) 5.655 {0/4:6} B:0 2.50176 [ 2.75132] ((1 . 6) (4 . 9) (8 . 12) (9 . 13)) 9.216 {0/5:6} B:0 2.50849 [ 2.75639] ((4 . 4) (6 . 6) (8 . 8) (11 . 12)) 13.673 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.6996 [and 1/min{score2}: 0.6361] [703, 2484]: Comparing 1cxq_A and 1ig8_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 32 (19 H + 13 S) secondary structure elements in 1ig8_A, of which 15 satisfy the size requirements. 1.66850 [ 2.50055] ((1 . 15) (3 . 16) (5 . 26) (6 . 27) (8 . 29) (9 . 31)) 6.875 {0/8:15} B:0 2.50042 [ 3.75012] ((5 . 26) (6 . 27) (8 . 29) (9 . 31)) 6.437 {0/2:6} B:0 3.01516 [ 3.48585] ((4 . 19) (6 . 27) (8 . 29) (9 . 31) (10 . 32)) 5.214 {2/7:10} B:0 4.14552 [ 4.61605] ((1 . 27) (2 . 28) (5 . 29) (8 . 32)) 11.583 {2/5:6} B:0 4.14669 [ 4.61690] ((5 . 18) (6 . 19) (10 . 22) (11 . 23)) 14.123 {2/5:6} B:0 SIMILARITY (1/min{score1}): 0.5993 [and 1/min{score2}: 0.3999] [703, 2491]: Comparing 1cxq_A and 1ih7_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 66 (34 H + 32 S) secondary structure elements in 1ih7_A, of which 27 satisfy the size requirements. 2.00263 [ 5.40013] ((1 . 10) (3 . 11) (4 . 12) (6 . 15) (9 . 17)) 8.625 {0/4:10} B:0 2.50011 [ 6.75001] ((1 . 12) (4 . 15) (5 . 16) (6 . 17)) 4.578 {0/4:6} B:0 2.50087 [ 6.75004] ((1 . 10) (3 . 11) (4 . 12) (9 . 15)) 7.722 {0/1:6} B:0 2.50104 [ 6.75005] ((1 . 11) (3 . 12) (6 . 15) (8 . 16)) 8.084 {0/0:6} B:0 2.50396 [ 6.75020] ((1 . 17) (4 . 20) (6 . 22) (11 . 26)) 11.290 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.5998 [and 1/min{score2}: 0.2580] [703, 2619]: Comparing 1cxq_A and 1iv0_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 7 (2 H + 5 S) secondary structure elements in 1iv0_A, of which 7 satisfy the size requirements. 1.46834 [ 1.10363] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (8 . 6) (9 . 7)) 3.013 {1/12:21} B:0 SIMILARITY (1/min{score1}): 0.6810 [and 1/min{score2}: 0.9061] [703, 2733]: Comparing 1cxq_A and 1j54_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 14 (8 H + 6 S) secondary structure elements in 1j54_A, of which 12 satisfy the size requirements. 1.66747 [ 2.00047] ((3 . 2) (4 . 4) (5 . 7) (6 . 8) (8 . 9) (9 . 11)) 5.591 {0/9:15} B:0 2.50004 [ 3.00002] ((1 . 1) (3 . 2) (4 . 4) (9 . 8)) 3.463 {0/3:6} B:0 2.50187 [ 3.00108] ((2 . 7) (3 . 8) (5 . 12) (10 . 14)) 9.357 {0/5:6} B:0 2.50219 [ 3.00127] ((1 . 4) (5 . 7) (6 . 8) (11 . 14)) 9.738 {0/4:6} B:0 2.72477 [ 3.13876] ((3 . 8) (4 . 11) (5 . 12) (10 . 14)) 7.875 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.5997 [and 1/min{score2}: 0.4999] [703, 2775]: Comparing 1cxq_A and 1j9a_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 14 (9 H + 5 S) secondary structure elements in 1j9a_A, of which 14 satisfy the size requirements. 2.00110 [ 2.80040] ((1 . 1) (3 . 2) (4 . 3) (8 . 7) (11 . 14)) 6.934 {0/4:10} B:0 2.50031 [ 3.50011] ((1 . 1) (3 . 2) (4 . 3) (8 . 7)) 5.992 {0/2:6} B:0 2.50150 [ 3.50055] ((6 . 8) (8 . 9) (9 . 11) (11 . 14)) 8.862 {0/4:6} B:0 2.50411 [ 3.50150] ((1 . 3) (5 . 7) (6 . 8) (11 . 14)) 11.401 {0/5:6} B:0 2.72499 [ 3.59020] ((2 . 5) (8 . 10) (10 . 13) (11 . 14)) 8.421 {1/5:6} B:0 SIMILARITY (1/min{score1}): 0.4997 [and 1/min{score2}: 0.3571] [703, 2821]: Comparing 1cxq_A and 1jce_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 32 (13 H + 19 S) secondary structure elements in 1jce_A, of which 12 satisfy the size requirements. 1.42895 [ 1.71451] ((1 . 1) (3 . 2) (4 . 3) (5 . 10) (6 . 11) (8 . 12) (9 . 13)) 4.135 {0/14:21} B:0 2.00126 [ 2.40073] ((1 . 4) (3 . 5) (5 . 10) (6 . 11) (8 . 12)) 7.174 {0/7:10} B:0 2.00149 [ 2.40086] ((1 . 4) (5 . 10) (6 . 11) (8 . 12) (9 . 13)) 7.482 {0/7:10} B:0 2.50251 [ 3.00145] ((1 . 2) (3 . 4) (4 . 5) (10 . 12)) 10.073 {0/4:6} B:0 3.43685 [ 3.53807] ((5 . 10) (6 . 11) (8 . 12) (9 . 13) (10 . 14)) 8.071 {2/6:10} B:0 SIMILARITY (1/min{score1}): 0.6998 [and 1/min{score2}: 0.5833] [703, 2822]: Comparing 1cxq_A and 1jce_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 32 (13 H + 19 S) secondary structure elements in 1jce_A, of which 15 satisfy the size requirements. 1.25288 [ 1.87586] ((1 . 15) (3 . 16) (4 . 17) (5 . 24) (6 . 26) (8 . 28) (9 . 29) (10 . 31)) 6.201 {0/21:28} B:0 1.42920 [ 2.14304] ((1 . 15) (3 . 16) (4 . 17) (5 . 24) (6 . 26) (8 . 28) (9 . 29)) 4.683 {0/14:21} B:0 1.66714 [ 2.50014] ((1 . 15) (3 . 16) (4 . 17) (5 . 24) (6 . 26) (9 . 29)) 4.898 {0/11:15} B:0 2.20788 [ 3.06943] ((5 . 25) (6 . 26) (8 . 28) (9 . 29) (10 . 31)) 7.456 {1/6:10} B:0 2.50097 [ 3.75029] ((4 . 26) (5 . 28) (6 . 29) (10 . 31)) 7.936 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.7982 [and 1/min{score2}: 0.5331] [703, 2910]: Comparing 1cxq_A and 1jj2_M, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 12 (8 H + 4 S) secondary structure elements in 1jj2_M, of which 11 satisfy the size requirements. 1.66682 [ 1.83345] ((1 . 3) (3 . 4) (4 . 5) (5 . 7) (6 . 8) (8 . 9)) 3.722 {0/9:15} B:0 2.00011 [ 2.20008] ((1 . 3) (3 . 4) (4 . 5) (5 . 7) (8 . 9)) 3.892 {0/6:10} B:0 2.00188 [ 2.20141] ((1 . 3) (5 . 7) (6 . 8) (8 . 9) (11 . 12)) 7.925 {0/6:10} B:0 2.50024 [ 2.75018] ((1 . 3) (3 . 4) (4 . 5) (8 . 7)) 5.585 {0/3:6} B:0 2.50039 [ 2.75029] ((2 . 2) (3 . 3) (4 . 4) (10 . 9)) 6.332 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.5999 [and 1/min{score2}: 0.5454] [703, 2954]: Comparing 1cxq_A and 1jl1_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1jl1_A, of which 10 satisfy the size requirements. 1.25151 [ 1.25151] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (8 . 8) (9 . 9) (10 . 10)) 5.275 {0/17:28} B:0 1.25991 [ 1.25991] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (8 . 6) (9 . 9) (10 . 10)) 5.678 {1/20:28} B:0 7.52307 [ 7.52307] ((1 . 1) (5 . 4) (6 . 5) (11 . 10)) 7.170 {3/4:6} B:0 7.52307 [ 7.52307] ((1 . 2) (3 . 3) (5 . 4) (11 . 10)) 7.241 {3/4:6} B:0 8.01910 [ 8.01910] ((1 . 2) (3 . 3) (5 . 6) (10 . 10)) 10.725 {4/5:6} B:0 SIMILARITY (1/min{score1}): 0.7990 [and 1/min{score2}: 0.7990] [703, 3210]: Comparing 1cxq_A and 1k8k_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 41 (22 H + 19 S) secondary structure elements in 1k8k_A, of which 16 satisfy the size requirements. 2.73659 [ 4.06489] ((5 . 35) (8 . 37) (10 . 40) (11 . 41)) 16.084 {1/5:6} B:0 2.97677 [ 4.14595] ((1 . 21) (5 . 23) (8 . 28) (11 . 35)) 12.686 {1/4:6} B:0 3.57563 [ 4.41631] ((2 . 30) (3 . 33) (8 . 37) (10 . 40)) 15.755 {2/6:6} B:0 5.07641 [ 5.44813] ((6 . 17) (9 . 18) (10 . 22) (11 . 23)) 6.461 {2/4:6} B:0 5.07678 [ 5.44843] ((3 . 26) (4 . 27) (8 . 30) (9 . 33)) 10.978 {2/4:6} B:0 SIMILARITY (1/min{score1}): 0.3654 [and 1/min{score2}: 0.2460] [703, 3260]: Comparing 1cxq_A and 1kcf_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 14 (8 H + 6 S) secondary structure elements in 1kcf_A, of which 12 satisfy the size requirements. 2.00052 [ 2.40030] ((1 . 3) (3 . 4) (4 . 5) (8 . 6) (9 . 7)) 5.739 {0/3:10} B:0 2.50029 [ 3.00017] ((1 . 5) (5 . 6) (6 . 7) (9 . 9)) 5.881 {0/4:6} B:0 2.50145 [ 3.00084] ((5 . 6) (6 . 7) (8 . 8) (10 . 10)) 8.782 {0/4:6} B:0 2.97740 [ 3.31336] ((1 . 7) (6 . 9) (8 . 11) (11 . 14)) 13.191 {1/4:6} B:0 3.57166 [ 3.78238] ((1 . 4) (3 . 5) (5 . 6) (10 . 8)) 10.901 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.4999 [and 1/min{score2}: 0.4166] [703, 3286]: Comparing 1cxq_A and 1kfs_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 43 (29 H + 14 S) secondary structure elements in 1kfs_A, of which 12 satisfy the size requirements. 1.66910 [ 2.00141] ((1 . 3) (3 . 4) (4 . 5) (6 . 7) (9 . 9) (11 . 15)) 7.375 {0/9:15} B:0 5.63090 [ 5.63716] ((1 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (9 . 9) (10 . 15)) 7.384 {9/16:21} B:0 7.52318 [ 7.54768] ((5 . 2) (8 . 6) (10 . 8) (11 . 10)) 11.101 {3/4:6} B:0 2.81811 [ 2.90641] ((1 . 3) (5 . 6) (6 . 7) (8 . 8) (9 . 9) (11 . 2)) 6.745 {3/11:15} B:1 4.29910 [ 4.31310] ((1 . 3) (3 . 4) (4 . 5) (6 . 7) (9 . 9) (10 . 15) (11 . 2)) 8.227 {6/14:21} B:1 SIMILARITY (1/min{score1}): 0.5991 [and 1/min{score2}: 0.4996] [703, 3925]: Comparing 1cxq_A and 1mgt_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 13 (8 H + 5 S) secondary structure elements in 1mgt_A, of which 6 satisfy the size requirements. 1.66756 [ 1.00414] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (10 . 5) (11 . 6)) 5.747 {0/8:15} B:0 6.04485 [ 6.00599] ((1 . 3) (2 . 4) (5 . 5) (8 . 6)) 9.427 {3/5:6} B:0 2.50037 [ 1.50173] ((1 . 2) (2 . 4) (3 . 3) (5 . 5)) 6.260 {0/4:6} B:1 7.52308 [ 7.50303] ((1 . 2) (2 . 4) (3 . 3) (5 . 6)) 7.891 {3/4:6} B:1 SIMILARITY (1/min{score1}): 0.5997 [and 1/min{score2}: 0.9959] [703, 4043]: Comparing 1cxq_A and 1mus_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 32 (21 H + 11 S) secondary structure elements in 1mus_A, of which 27 satisfy the size requirements. 1.00495 [ 2.70025] ((1 . 6) (2 . 7) (3 . 8) (4 . 9) (5 . 11) (6 . 13) (8 . 15) (9 . 16) (10 . 26) (11 . 28)) 5.432 {1/35:45} B:0 1.11266 [ 3.00008] ((1 . 6) (3 . 8) (4 . 9) (5 . 11) (6 . 13) (8 . 15) (9 . 16) (10 . 26) (11 . 28)) 4.858 {0/26:36} B:0 2.00020 [ 5.40001] ((1 . 6) (3 . 8) (4 . 9) (5 . 11) (9 . 13)) 4.512 {0/7:10} B:0 2.11950 [ 5.40663] ((1 . 6) (2 . 7) (6 . 9) (8 . 11) (9 . 13)) 5.673 {1/7:10} B:0 2.50006 [ 6.75000] ((1 . 21) (3 . 23) (4 . 24) (5 . 25)) 3.982 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.9951 [and 1/min{score2}: 0.3703] [703, 4057]: Comparing 1cxq_A and 1mwm_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 27 (13 H + 14 S) secondary structure elements in 1mwm_A, of which 11 satisfy the size requirements. 1.42955 [ 1.57216] ((1 . 1) (3 . 2) (4 . 3) (5 . 8) (6 . 9) (8 . 11) (9 . 13)) 5.228 {0/15:21} B:0 1.70669 [ 1.86374] ((1 . 1) (3 . 2) (4 . 3) (5 . 8) (6 . 9) (11 . 14)) 8.649 {1/11:15} B:0 2.00392 [ 2.20295] ((1 . 5) (5 . 8) (6 . 9) (8 . 11) (9 . 13)) 9.527 {0/6:10} B:0 2.38700 [ 2.51314] ((1 . 1) (3 . 2) (4 . 3) (8 . 7) (11 . 11)) 13.210 {1/5:10} B:0 2.50083 [ 2.75062] ((3 . 6) (5 . 8) (6 . 9) (8 . 11)) 7.631 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6995 [and 1/min{score2}: 0.6361] [703, 4058]: Comparing 1cxq_A and 1mwm_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 27 (13 H + 14 S) secondary structure elements in 1mwm_A, of which 11 satisfy the size requirements. 2.50082 [ 2.75062] ((5 . 14) (6 . 15) (9 . 18) (10 . 19)) 7.619 {0/2:6} B:0 2.50085 [ 2.75064] ((5 . 14) (6 . 15) (10 . 19) (11 . 20)) 7.687 {0/4:6} B:0 2.97365 [ 3.13278] ((2 . 20) (5 . 22) (6 . 23) (8 . 24)) 8.129 {1/4:6} B:0 2.97483 [ 3.13378] ((2 . 14) (3 . 15) (4 . 16) (10 . 22)) 10.569 {1/4:6} B:0 3.57103 [ 3.66665] ((2 . 21) (5 . 22) (6 . 23) (8 . 24)) 9.018 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.4531 [and 1/min{score2}: 0.4233] [703, 4191]: Comparing 1cxq_A and 1nbw_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 53 (23 H + 30 S) secondary structure elements in 1nbw_A, of which 18 satisfy the size requirements. 1.26152 [ 2.25200] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 6) (8 . 33) (9 . 34) (10 . 35)) 5.555 {1/19:28} B:0 1.42879 [ 2.57147] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 6) (8 . 33) (9 . 34)) 3.592 {0/13:21} B:0 2.00018 [ 3.60003] ((1 . 1) (3 . 2) (4 . 3) (5 . 4) (9 . 6)) 4.432 {0/6:10} B:0 2.50037 [ 4.50006] ((4 . 25) (5 . 27) (6 . 28) (8 . 29)) 6.244 {0/3:6} B:0 2.51428 [ 4.50247] ((2 . 29) (3 . 31) (4 . 32) (9 . 34)) 15.584 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.7927 [and 1/min{score2}: 0.4440] [703, 4193]: Comparing 1cxq_A and 1nbw_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 53 (23 H + 30 S) secondary structure elements in 1nbw_A, of which 16 satisfy the size requirements. 2.50093 [ 4.00023] ((1 . 41) (3 . 42) (4 . 43) (8 . 47)) 7.847 {0/3:6} B:0 2.50253 [ 4.00062] ((6 . 36) (9 . 38) (10 . 39) (11 . 44)) 10.095 {0/4:6} B:0 2.51027 [ 4.00252] ((1 . 38) (6 . 45) (8 . 47) (11 . 50)) 14.344 {0/5:6} B:0 2.51524 [ 4.00375] ((1 . 38) (2 . 39) (6 . 43) (8 . 44)) 15.844 {0/4:6} B:0 2.53215 [ 4.00798] ((3 . 42) (4 . 43) (8 . 47) (11 . 53)) 19.142 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.6989 [and 1/min{score2}: 0.4374] [703, 4281]: Comparing 1cxq_A and 1nk4_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 46 (29 H + 17 S) secondary structure elements in 1nk4_A, of which 12 satisfy the size requirements. 2.72726 [ 3.14039] ((5 . 9) (6 . 10) (10 . 14) (11 . 16)) 11.432 {1/5:6} B:0 2.97392 [ 3.31084] ((2 . 6) (5 . 9) (6 . 10) (8 . 13)) 8.887 {1/4:6} B:0 2.97463 [ 3.31135] ((2 . 7) (3 . 8) (5 . 11) (10 . 16)) 10.262 {1/4:6} B:0 4.14486 [ 4.28484] ((3 . 8) (4 . 10) (5 . 11) (10 . 16)) 8.638 {2/5:6} B:0 4.76774 [ 4.77377] ((1 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 8) (8 . 9) (9 . 10) (10 . 16)) 8.605 {10/21:28} B:0 SIMILARITY (1/min{score1}): 0.4885 [and 1/min{score2}: 0.4119] [703, 4391]: Comparing 1cxq_A and 1nu0_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 10 (4 H + 6 S) secondary structure elements in 1nu0_A, of which 8 satisfy the size requirements. 1.67117 [ 1.34208] ((1 . 1) (3 . 2) (4 . 3) (5 . 5) (6 . 6) (11 . 10)) 8.607 {0/7:15} B:0 3.57211 [ 3.43828] ((3 . 1) (4 . 2) (8 . 5) (10 . 7)) 11.813 {1/3:6} B:0 3.89963 [ 3.89354] ((1 . 1) (3 . 2) (4 . 3) (5 . 5) (6 . 6) (8 . 7) (9 . 8) (10 . 10)) 8.928 {7/18:28} B:0 6.04478 [ 6.01851] ((1 . 2) (3 . 3) (5 . 7) (10 . 10)) 8.138 {3/5:6} B:0 6.04481 [ 6.01854] ((2 . 5) (3 . 6) (5 . 7) (10 . 10)) 8.839 {3/5:6} B:0 SIMILARITY (1/min{score1}): 0.7920 [and 1/min{score2}: 0.9763] [703, 4469]: Comparing 1cxq_A and 1o13_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 10 (5 H + 5 S) secondary structure elements in 1o13_A, of which 8 satisfy the size requirements. 1.44549 [ 1.17509] ((1 . 1) (3 . 3) (4 . 4) (5 . 6) (6 . 7) (8 . 8) (9 . 9)) 3.820 {1/15:21} B:0 2.50110 [ 2.00215] ((4 . 1) (8 . 6) (9 . 7) (11 . 10)) 8.199 {0/5:6} B:0 3.64920 [ 3.64176] ((1 . 1) (3 . 3) (4 . 4) (5 . 6) (6 . 7) (8 . 8) (9 . 9) (10 . 10)) 7.161 {8/22:28} B:0 7.52309 [ 7.50951] ((3 . 1) (6 . 4) (8 . 6) (9 . 7)) 8.436 {3/4:6} B:0 7.52314 [ 7.50957] ((4 . 3) (6 . 4) (8 . 6) (10 . 10)) 10.337 {3/4:6} B:0 SIMILARITY (1/min{score1}): 0.6918 [and 1/min{score2}: 0.8510] [703, 4935]: Comparing 1cxq_A and 1p90_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 12 (5 H + 7 S) secondary structure elements in 1p90_A, of which 10 satisfy the size requirements. 1.42927 [ 1.42927] ((1 . 1) (3 . 3) (4 . 4) (5 . 6) (6 . 7) (8 . 8) (9 . 9)) 4.811 {0/14:21} B:0 2.07448 [ 2.07448] ((1 . 4) (2 . 5) (5 . 8) (6 . 9) (8 . 11)) 8.464 {1/8:10} B:0 2.50031 [ 2.50031] ((2 . 5) (4 . 7) (5 . 8) (6 . 9)) 5.979 {0/4:6} B:0 3.35023 [ 3.35023] ((1 . 1) (3 . 3) (4 . 4) (5 . 6) (6 . 7) (8 . 8) (9 . 9) (10 . 11)) 8.516 {7/21:28} B:0 3.57067 [ 3.57067] ((3 . 1) (4 . 3) (10 . 11) (11 . 12)) 6.930 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.6997 [and 1/min{score2}: 0.6997] [703, 5120]: Comparing 1cxq_A and 1pv9_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 31 (12 H + 19 S) secondary structure elements in 1pv9_A, of which 12 satisfy the size requirements. 1.42873 [ 1.71437] ((1 . 2) (3 . 4) (4 . 5) (5 . 8) (6 . 9) (8 . 10) (9 . 11)) 3.295 {0/13:21} B:0 1.43123 [ 1.71583] ((1 . 2) (3 . 4) (4 . 5) (6 . 9) (8 . 10) (9 . 11) (10 . 12)) 6.718 {0/16:21} B:0 1.66877 [ 2.00122] ((1 . 2) (3 . 4) (4 . 5) (8 . 10) (9 . 11) (10 . 12)) 7.109 {0/12:15} B:0 2.50025 [ 3.00014] ((4 . 2) (6 . 5) (8 . 6) (9 . 7)) 5.632 {0/3:6} B:0 2.50026 [ 3.00015] ((1 . 5) (4 . 7) (5 . 8) (6 . 11)) 5.725 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.6999 [and 1/min{score2}: 0.5833] [703, 5243]: Comparing 1cxq_A and 1q8i_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 51 (24 H + 27 S) secondary structure elements in 1q8i_A, of which 28 satisfy the size requirements. 2.50004 [ 7.00000] ((1 . 13) (4 . 16) (5 . 17) (6 . 18)) 3.664 {0/5:6} B:0 2.50085 [ 7.00004] ((2 . 6) (3 . 7) (4 . 8) (5 . 9)) 7.681 {0/3:6} B:0 2.50273 [ 7.00012] ((2 . 10) (3 . 11) (4 . 12) (6 . 13)) 10.292 {0/4:6} B:0 2.72929 [ 7.01194] ((4 . 18) (5 . 19) (10 . 23) (11 . 25)) 12.919 {1/5:6} B:0 2.97374 [ 7.02835] ((1 . 2) (3 . 3) (4 . 4) (8 . 9)) 8.389 {1/4:6} B:0 SIMILARITY (1/min{score1}): 0.5985 [and 1/min{score2}: 0.2401] [703, 5447]: Comparing 1cxq_A and 1qtm_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 40 (25 H + 15 S) secondary structure elements in 1qtm_A, of which 9 satisfy the size requirements. 2.50086 [ 2.25118] ((3 . 2) (4 . 3) (5 . 5) (11 . 9)) 7.713 {0/2:6} B:0 2.50263 [ 2.25360] ((1 . 1) (3 . 2) (5 . 5) (11 . 9)) 10.190 {0/3:6} B:0 4.14467 [ 4.09667] ((1 . 3) (3 . 4) (5 . 5) (10 . 9)) 6.689 {2/5:6} B:0 5.07650 [ 5.05063] ((1 . 3) (3 . 4) (5 . 6) (10 . 9)) 8.333 {2/4:6} B:0 7.52308 [ 7.51518] ((1 . 2) (3 . 3) (4 . 4) (10 . 9)) 7.824 {3/4:6} B:0 SIMILARITY (1/min{score1}): 0.3999 [and 1/min{score2}: 0.4442] [703, 5500]: Comparing 1cxq_A and 1qz5_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 38 (19 H + 19 S) secondary structure elements in 1qz5_A, of which 11 satisfy the size requirements. 1.42888 [ 1.57166] ((1 . 1) (3 . 2) (4 . 3) (5 . 10) (6 . 12) (8 . 13) (9 . 14)) 3.931 {0/12:21} B:0 2.00022 [ 2.20016] ((1 . 3) (5 . 10) (6 . 12) (8 . 13) (9 . 14)) 4.623 {0/6:10} B:0 2.00031 [ 2.20024] ((2 . 6) (5 . 10) (6 . 12) (8 . 13) (9 . 14)) 5.064 {0/6:10} B:0 2.00110 [ 2.20083] ((1 . 4) (5 . 10) (6 . 12) (8 . 13) (9 . 14)) 6.930 {0/6:10} B:0 3.57192 [ 3.66747] ((1 . 2) (3 . 3) (9 . 12) (10 . 13)) 11.457 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.6998 [and 1/min{score2}: 0.6363] [703, 5501]: Comparing 1cxq_A and 1qz5_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 38 (19 H + 19 S) secondary structure elements in 1qz5_A, of which 18 satisfy the size requirements. 2.50792 [ 4.50136] ((4 . 30) (5 . 32) (10 . 37) (11 . 38)) 13.438 {0/5:6} B:0 2.51035 [ 4.50178] ((1 . 17) (2 . 21) (10 . 27) (11 . 29)) 14.370 {0/4:6} B:0 2.73245 [ 4.54509] ((2 . 29) (5 . 34) (8 . 37) (10 . 38)) 14.545 {1/5:6} B:0 2.97638 [ 4.60445] ((1 . 24) (5 . 28) (6 . 30) (8 . 32)) 12.345 {1/4:6} B:0 3.57096 [ 4.80624] ((1 . 20) (8 . 26) (10 . 28) (11 . 29)) 8.703 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.6988 [and 1/min{score2}: 0.3888] [703, 5883]: Comparing 1cxq_A and 1t7p_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 45 (26 H + 19 S) secondary structure elements in 1t7p_A, of which 12 satisfy the size requirements. 2.50023 [ 3.00014] ((5 . 7) (6 . 9) (10 . 11) (11 . 12)) 5.566 {0/6:6} B:0 2.50127 [ 3.00074] ((1 . 3) (3 . 4) (5 . 5) (11 . 11)) 8.502 {0/3:6} B:0 2.50228 [ 3.00132] ((5 . 7) (6 . 9) (10 . 11) (11 . 13)) 9.835 {0/5:6} B:0 2.72679 [ 3.14009] ((2 . 7) (3 . 9) (5 . 10) (10 . 13)) 10.993 {1/5:6} B:0 3.67586 [ 3.71686] ((1 . 1) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (9 . 9)) 4.202 {4/11:15} B:0 SIMILARITY (1/min{score1}): 0.6983 [and 1/min{score2}: 0.5827] [703, 5906]: Comparing 1cxq_A and 1tgo_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 57 (27 H + 30 S) secondary structure elements in 1tgo_A, of which 27 satisfy the size requirements. 2.50144 [ 6.75007] ((5 . 17) (6 . 18) (9 . 20) (11 . 24)) 8.758 {0/4:6} B:0 2.50145 [ 6.75007] ((4 . 4) (5 . 5) (6 . 7) (10 . 10)) 8.784 {0/4:6} B:0 2.50150 [ 6.75008] ((3 . 20) (4 . 21) (10 . 26) (11 . 27)) 8.852 {0/3:6} B:0 2.50196 [ 6.75010] ((1 . 13) (6 . 16) (8 . 17) (9 . 18)) 9.471 {0/3:6} B:0 2.50240 [ 6.75012] ((6 . 1) (9 . 3) (10 . 5) (11 . 10)) 9.961 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.5982 [and 1/min{score2}: 0.2222] [703, 6064]: Comparing 1cxq_A and 1uoc_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 19 (13 H + 6 S) secondary structure elements in 1uoc_A, of which 17 satisfy the size requirements. 2.50465 [ 4.25095] ((2 . 9) (5 . 12) (9 . 14) (11 . 18)) 11.759 {0/4:6} B:0 2.72608 [ 4.30169] ((1 . 2) (4 . 4) (5 . 5) (11 . 10)) 10.197 {1/5:6} B:0 3.57213 [ 4.60581] ((1 . 2) (2 . 3) (8 . 8) (10 . 9)) 11.853 {2/6:6} B:0 6.04501 [ 6.34669] ((1 . 11) (5 . 13) (6 . 14) (10 . 18)) 11.492 {3/5:6} B:0 1.25888 [ 2.12683] ((1 . 4) (2 . 9) (3 . 6) (4 . 7) (6 . 11) (8 . 13) (9 . 14) (11 . 18)) 8.234 {0/20:28} B:1 SIMILARITY (1/min{score1}): 0.7944 [and 1/min{score2}: 0.4702] [703, 6249]: Comparing 1cxq_A and 1vhx_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 11 (6 H + 5 S) secondary structure elements in 1vhx_A, of which 10 satisfy the size requirements. 1.13254 [ 1.13254] ((1 . 1) (3 . 2) (4 . 3) (5 . 5) (6 . 6) (8 . 7) (9 . 8) (10 . 9) (11 . 11)) 8.893 {1/25:36} B:0 1.42939 [ 1.42939] ((1 . 1) (3 . 2) (4 . 3) (5 . 5) (6 . 6) (8 . 7) (9 . 8)) 4.995 {0/12:21} B:0 3.57093 [ 3.57093] ((3 . 1) (4 . 2) (5 . 5) (10 . 7)) 8.590 {1/3:6} B:0 3.57181 [ 3.57181] ((3 . 1) (4 . 2) (8 . 5) (10 . 7)) 11.232 {1/3:6} B:0 3.69671 [ 3.69671] ((1 . 1) (3 . 2) (4 . 3) (5 . 5) (6 . 6) (8 . 7) (9 . 8) (10 . 11)) 8.297 {7/19:28} B:0 SIMILARITY (1/min{score1}): 0.8830 [and 1/min{score2}: 0.8830] [703, 6299]: Comparing 1cxq_A and 1vk0_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 16 (9 H + 7 S) secondary structure elements in 1vk0_A, of which 15 satisfy the size requirements. 2.50073 [ 3.75022] ((3 . 1) (4 . 2) (5 . 3) (6 . 4)) 7.384 {0/4:6} B:0 4.14492 [ 4.61562] ((4 . 1) (5 . 3) (6 . 4) (9 . 6)) 9.073 {2/5:6} B:0 5.07648 [ 5.35582] ((1 . 4) (6 . 9) (9 . 11) (11 . 15)) 7.989 {2/4:6} B:0 5.07691 [ 5.35619] ((4 . 11) (5 . 12) (8 . 13) (10 . 14)) 11.743 {2/4:6} B:0 6.69946 [ 6.82767] ((1 . 2) (4 . 4) (6 . 7) (10 . 10)) 8.890 {2/3:6} B:0 SIMILARITY (1/min{score1}): 0.4825 [and 1/min{score2}: 0.3309] [703, 6323]: Comparing 1cxq_A and 1vrt_A, based on their crossing files. There are 11 (6 H + 5 S) secondary structure elements in 1cxq_A, of which 10 satisfy the size requirements. There are 41 (16 H + 25 S) secondary structure elements in 1vrt_A, of which 8 satisfy the size requirements. 1.42908 [ 1.14384] ((1 . 33) (3 . 34) (4 . 35) (5 . 36) (6 . 37) (8 . 40) (9 . 41)) 4.433 {0/9:21} B:0 1.46874 [ 1.21712] ((1 . 33) (3 . 34) (4 . 35) (5 . 36) (6 . 37) (8 . 38) (9 . 41)) 4.507 {1/12:21} B:0 1.66693 [ 1.33385] ((1 . 33) (3 . 34) (4 . 35) (5 . 36) (6 . 37) (9 . 41)) 4.229 {0/8:15} B:0 1.66696 [ 1.33391] ((1 . 33) (3 . 34) (4 . 35) (5 . 36) (6 . 37) (8 . 38)) 4.352 {0/7:15} B:0 SIMILARITY (1/min{score1}): 0.6998 [and 1/min{score2}: 0.8742] -------------------------------------------------------------------------------------------------------------------------