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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 2608 1iu8_A) ( 318 1b8o_A) 0.7850 0.6109 4.9531 ( 0 34 55) 0 0.7850 0.6109 14 18
( 2608 1iu8_A) ( 442 1bou_B) 0.5000 0.3500 3.6879 ( 0 12 21) 0 0.7849 0.5499 14 20
( 2608 1iu8_A) ( 541 1c8b_A) 0.3570 0.2777 8.8957 ( 0 1 10) 0 0.4999 0.3889 14 18
( 2608 1iu8_A) ( 551 1cb0_A) 0.6427 0.5624 4.4343 ( 0 21 36) 0 0.7122 0.6239 14 16
( 2608 1iu8_A) ( 583 1cfz_A) 0.6427 0.8993 4.1779 ( 0 15 36) 0 0.6427 0.8993 14 10
( 2608 1iu8_A) ( 584 1cg2_A) 0.3571 0.2632 3.4629 ( 0 6 10) 0 0.7129 0.5260 14 19
( 2608 1iu8_A) ( 811 1de4_C) 0.4999 0.3889 5.0414 ( 0 10 21) 0 0.6409 0.4994 14 18
( 2608 1iu8_A) ( 1577 1fno_A) 0.2857 0.2500 4.1121 ( 0 1 6) 0 0.4282 0.3874 14 16
( 2608 1iu8_A) ( 1702 1g2o_A) 0.7136 0.6246 5.6502 ( 0 26 45) 0 0.7522 0.6695 14 16
( 2608 1iu8_A) ( 2137 1h8l_A) 0.7853 0.6110 4.3701 ( 0 33 55) 0 0.7853 0.6110 14 18
( 2608 1iu8_A) ( 2608 1iu8_A) 1.0000 1.0000 0.0000 ( 0 67 91) 0 1.0000 1.0000 14 14
( 2608 1iu8_A) ( 2834 1je0_A) 0.4999 0.4375 5.2188 ( 0 13 21) 0 0.7781 0.6836 14 16
( 2608 1iu8_A) ( 3019 1jqg_A) 0.7855 0.6874 3.5290 ( 0 33 55) 0 0.7855 0.6874 14 16
( 2608 1iu8_A) ( 3080 1jwq_A) 0.7139 0.9080 4.6707 ( 0 28 45) 0 0.7139 0.9080 14 11
( 2608 1iu8_A) ( 3097 1jys_A) 0.7358 0.6602 5.7072 ( 3 32 55) 0 0.7358 0.6602 14 16
( 2608 1iu8_A) ( 3584 1lam ) 0.7851 0.4782 4.8297 ( 0 32 55) 0 0.7851 0.5092 14 23
( 2608 1iu8_A) ( 3620 1lfw_A) 0.3571 0.3125 3.6020 ( 0 6 10) 0 0.4338 0.4239 14 16
( 2608 1iu8_A) ( 3832 1m4l_A) 0.7855 0.6874 3.8485 ( 0 30 55) 0 0.7855 0.6874 14 16
( 2608 1iu8_A) ( 4591 1obr ) 0.7855 0.5789 3.7322 ( 0 34 55) 0 0.7855 0.5789 14 19
( 2608 1iu8_A) ( 4605 1odk_A) 0.8557 0.7053 5.3744 ( 0 42 66) 0 0.8557 0.7053 14 17
( 2608 1iu8_A) ( 5179 1q1g_A) 0.7852 0.6110 4.6187 ( 0 34 55) 0 0.7852 0.6110 14 18
( 2608 1iu8_A) ( 5416 1qq9_A) 0.4285 0.4000 5.2526 ( 0 7 15) 0 0.6381 0.5966 14 15
( 2608 1iu8_A) ( 5543 1r3n_A) 0.7855 0.6110 3.8312 ( 0 32 55) 0 0.7855 0.6110 14 18
( 2608 1iu8_A) ( 5701 1rtq_A) 0.5000 0.4667 3.6461 ( 0 13 21) 0 0.7841 0.7322 14 15
( 2608 1iu8_A) ( 5724 1rxy_A) 0.8553 0.6661 5.7207 ( 0 41 66) 0 0.8553 0.6661 14 18
( 2608 1iu8_A) ( 5727 1ryb_A) 0.6426 0.7494 4.9701 ( 0 14 36) 0 0.6426 0.7494 14 12
( 2608 1iu8_A) ( 6225 1vgy_A) 0.7853 0.6110 4.3705 ( 0 33 55) 0 0.7853 0.6110 14 18
( 2608 1iu8_A) ( 6233 1vhe_A) 0.7853 0.5788 4.4586 ( 0 33 55) 0 0.7853 0.5788 14 19
( 2608 1iu8_A) ( 6240 1vho_A) 0.7849 0.5788 4.1896 ( 1 35 55) 0 0.7849 0.5788 14 19
( 2608 1iu8_A) ( 6248 1vhw_A) 0.8559 0.7054 5.1936 ( 0 42 66) 0 0.8559 0.7054 14 17
( 2608 1iu8_A) ( 6519 2pth ) 0.6426 0.6919 4.9365 ( 0 16 36) 0 0.6426 0.6919 14 13
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