------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3019 1jqg_A) ( 318 1b8o_A) 0.4364 0.3883 5.6116 ( 1 14 21) 0 0.8729 0.7766 16 18 ( 3019 1jqg_A) ( 442 1bou_B) 0.3124 0.2500 9.7807 ( 0 3 10) 0 0.8737 0.6996 16 20 ( 3019 1jqg_A) ( 541 1c8b_A) 0.3125 0.2778 3.7988 ( 0 4 10) 0 0.3749 0.3333 16 18 ( 3019 1jqg_A) ( 551 1cb0_A) 0.3706 0.3706 4.7695 ( 1 8 15) 0 0.7362 0.7362 16 16 ( 3019 1jqg_A) ( 583 1cfz_A) 0.5608 0.8829 3.2402 ( 1 17 36) 0 0.5624 0.8994 16 10 ( 3019 1jqg_A) ( 584 1cg2_A) 0.8122 0.6841 3.4187 ( 1 51 78) 0 0.9263 0.7847 16 19 ( 3019 1jqg_A) ( 811 1de4_C) 0.8117 0.7218 4.9662 ( 0 45 78) 0 0.8117 0.7218 16 18 ( 3019 1jqg_A) ( 1577 1fno_A) 0.6249 0.6249 4.1680 ( 0 25 45) 0 0.6249 0.6249 16 16 ( 3019 1jqg_A) ( 1702 1g2o_A) 0.3706 0.3706 5.7903 ( 1 8 15) 0 0.8086 0.8086 16 16 ( 3019 1jqg_A) ( 2137 1h8l_A) 0.9996 0.8887 2.9971 ( 1 83 120) 0 0.9996 0.8887 16 18 ( 3019 1jqg_A) ( 2608 1iu8_A) 0.6874 0.7855 3.5290 ( 0 33 55) 0 0.6874 0.7855 16 14 ( 3019 1jqg_A) ( 2834 1je0_A) 0.3750 0.3750 4.0452 ( 0 9 15) 0 0.8099 0.8099 16 16 ( 3019 1jqg_A) ( 3019 1jqg_A) 1.0000 1.0000 0.0000 ( 0 91 120) 0 1.0000 1.0000 16 16 ( 3019 1jqg_A) ( 3080 1jwq_A) 0.6250 0.9090 2.6014 ( 0 27 45) 0 0.6862 0.9919 16 11 ( 3019 1jqg_A) ( 3097 1jys_A) 0.3750 0.3750 4.6060 ( 0 9 15) 0 0.8120 0.8120 16 16 ( 3019 1jqg_A) ( 3584 1lam ) 0.8736 0.6085 5.2210 ( 0 56 91) 0 0.8736 0.6374 16 23 ( 3019 1jqg_A) ( 3620 1lfw_A) 0.7496 0.7496 4.4795 ( 0 38 66) 0 0.7496 0.7496 16 16 ( 3019 1jqg_A) ( 3832 1m4l_A) 0.9999 0.9999 1.4224 ( 1 85 120) 0 0.9999 0.9999 16 16 ( 3019 1jqg_A) ( 4591 1obr ) 0.9999 0.8421 1.9781 ( 0 86 120) 0 0.9999 0.8421 16 19 ( 3019 1jqg_A) ( 4605 1odk_A) 0.3750 0.3529 3.8200 ( 0 8 15) 0 0.8099 0.7628 16 17 ( 3019 1jqg_A) ( 5179 1q1g_A) 0.3501 0.3186 4.6802 ( 2 10 15) 0 0.8097 0.7207 16 18 ( 3019 1jqg_A) ( 5416 1qq9_A) 0.7461 0.7947 3.9586 ( 2 40 66) 0 0.7461 0.7947 16 15 ( 3019 1jqg_A) ( 5543 1r3n_A) 0.8744 0.7775 3.9334 ( 1 59 91) 0 0.8744 0.7775 16 18 ( 3019 1jqg_A) ( 5701 1rtq_A) 0.8121 0.8662 4.0255 ( 0 52 78) 0 0.8121 0.8662 16 15 ( 3019 1jqg_A) ( 5724 1rxy_A) 0.4175 0.3773 4.7811 ( 2 13 21) 0 0.8095 0.7206 16 18 ( 3019 1jqg_A) ( 5727 1ryb_A) 0.3124 0.4163 9.5710 ( 0 4 10) 0 0.6873 0.9159 16 12 ( 3019 1jqg_A) ( 6225 1vgy_A) 0.8745 0.7775 4.0404 ( 0 57 91) 0 0.8745 0.7775 16 18 ( 3019 1jqg_A) ( 6233 1vhe_A) 0.8746 0.7367 3.7827 ( 0 59 91) 0 0.8846 0.7655 16 19 ( 3019 1jqg_A) ( 6240 1vho_A) 0.8732 0.7361 3.8764 ( 2 62 91) 0 0.8732 0.7361 16 19 ( 3019 1jqg_A) ( 6248 1vhw_A) 0.3750 0.3529 4.2181 ( 0 9 15) 0 0.8098 0.7627 16 17 ( 3019 1jqg_A) ( 6519 2pth ) 0.3125 0.3846 6.5510 ( 0 2 10) 0 0.7495 0.9217 16 13 -------------------------------------------------------------------------------------------------------------------------