------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3080 1jwq_A) ( 318 1b8o_A) 0.9080 0.5555 4.6450 ( 0 27 45) 0 0.9679 0.6082 11 18 ( 3080 1jwq_A) ( 442 1bou_B) 0.5452 0.3000 6.1610 ( 0 9 15) 0 0.9080 0.4999 11 20 ( 3080 1jwq_A) ( 541 1c8b_A) 0.5454 0.3333 3.5941 ( 0 8 15) 0 0.5454 0.3333 11 18 ( 3080 1jwq_A) ( 551 1cb0_A) 0.4543 0.3125 7.7533 ( 0 5 10) 0 0.7038 0.4962 11 16 ( 3080 1jwq_A) ( 583 1cfz_A) 0.7272 0.7998 3.4722 ( 0 13 28) 0 0.7272 0.7998 11 10 ( 3080 1jwq_A) ( 584 1cg2_A) 0.9032 0.5259 5.3712 ( 1 25 45) 0 0.9032 0.5259 11 19 ( 3080 1jwq_A) ( 811 1de4_C) 0.8177 0.5000 4.2728 ( 0 18 36) 0 0.8177 0.5000 11 18 ( 3080 1jwq_A) ( 1577 1fno_A) 0.3635 0.2500 7.8305 ( 0 2 6) 0 0.3635 0.2500 11 16 ( 3080 1jwq_A) ( 1702 1g2o_A) 0.7738 0.5969 4.7371 ( 3 28 45) 0 0.9029 0.6240 11 16 ( 3080 1jwq_A) ( 2137 1h8l_A) 0.9086 0.5555 3.7369 ( 0 26 45) 0 0.9086 0.5972 11 18 ( 3080 1jwq_A) ( 2608 1iu8_A) 0.9080 0.7139 4.6707 ( 0 28 45) 0 0.9080 0.7139 11 14 ( 3080 1jwq_A) ( 2834 1je0_A) 0.9086 0.6249 3.8229 ( 0 27 45) 0 0.9086 0.6249 11 16 ( 3080 1jwq_A) ( 3019 1jqg_A) 0.9090 0.6250 2.6014 ( 0 27 45) 0 0.9919 0.6862 11 16 ( 3080 1jwq_A) ( 3080 1jwq_A) 1.0000 1.0000 0.0000 ( 0 39 55) 0 1.0000 1.0000 11 11 ( 3080 1jwq_A) ( 3097 1jys_A) 0.9086 0.6249 3.7258 ( 0 25 45) 0 0.9086 0.6249 11 16 ( 3080 1jwq_A) ( 3584 1lam ) 0.9076 0.4347 5.0189 ( 0 25 45) 0 0.9076 0.4347 11 23 ( 3080 1jwq_A) ( 3620 1lfw_A) 0.6361 0.4375 4.8850 ( 0 10 21) 0 0.6361 0.4375 11 16 ( 3080 1jwq_A) ( 3832 1m4l_A) 0.9089 0.6250 2.9390 ( 0 26 45) 0 0.9453 0.6781 11 16 ( 3080 1jwq_A) ( 4591 1obr ) 0.9970 0.5787 3.9738 ( 1 33 55) 0 0.9970 0.5787 11 19 ( 3080 1jwq_A) ( 4605 1odk_A) 0.9085 0.5882 4.0323 ( 0 27 45) 0 0.9085 0.5882 11 17 ( 3080 1jwq_A) ( 5179 1q1g_A) 0.9082 0.5555 4.4248 ( 0 27 45) 0 0.9082 0.5555 11 18 ( 3080 1jwq_A) ( 5416 1qq9_A) 0.6362 0.4666 4.2937 ( 0 12 21) 0 0.7175 0.5312 11 15 ( 3080 1jwq_A) ( 5543 1r3n_A) 0.9086 0.5555 3.7973 ( 0 26 45) 0 0.9086 0.5555 11 18 ( 3080 1jwq_A) ( 5701 1rtq_A) 0.6363 0.4667 3.2427 ( 0 12 21) 0 0.6363 0.4667 11 15 ( 3080 1jwq_A) ( 5724 1rxy_A) 0.9083 0.5555 4.2777 ( 0 25 45) 0 0.9083 0.5555 11 18 ( 3080 1jwq_A) ( 5727 1ryb_A) 0.7193 0.6615 4.7836 ( 1 16 28) 0 0.7193 0.6615 11 12 ( 3080 1jwq_A) ( 6225 1vgy_A) 0.9074 0.5554 5.1708 ( 0 27 45) 0 0.9074 0.5554 11 18 ( 3080 1jwq_A) ( 6233 1vhe_A) 0.9088 0.5263 3.2059 ( 0 27 45) 0 0.9088 0.5534 11 19 ( 3080 1jwq_A) ( 6240 1vho_A) 0.9086 0.5263 3.8164 ( 0 28 45) 0 0.9086 0.5263 11 19 ( 3080 1jwq_A) ( 6248 1vhw_A) 0.9085 0.5882 4.0392 ( 0 27 45) 0 0.9085 0.5882 11 17 ( 3080 1jwq_A) ( 6519 2pth ) 0.6363 0.5384 3.2187 ( 0 10 21) 0 0.6363 0.5384 11 13 -------------------------------------------------------------------------------------------------------------------------