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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 3097 1jys_A) ( 318 1b8o_A) 0.9338 0.8313 3.6837 ( 3 82 105) 0 0.9338 0.8313 16 18
( 3097 1jys_A) ( 442 1bou_B) 0.3125 0.2500 6.3582 ( 0 6 10) 0 0.7483 0.5994 16 20
( 3097 1jys_A) ( 541 1c8b_A) 0.4370 0.3886 9.3491 ( 0 10 21) 0 0.4872 0.4529 16 18
( 3097 1jys_A) ( 551 1cb0_A) 0.8736 0.8736 3.9877 ( 2 68 91) 0 0.8736 0.8736 16 16
( 3097 1jys_A) ( 583 1cfz_A) 0.5597 0.8722 4.5591 ( 1 15 36) 0 0.5597 0.8722 16 10
( 3097 1jys_A) ( 584 1cg2_A) 0.3125 0.2632 5.3177 ( 0 5 10) 0 0.8110 0.6836 16 19
( 3097 1jys_A) ( 811 1de4_C) 0.3748 0.3332 9.2551 ( 0 7 15) 0 0.7488 0.6660 16 18
( 3097 1jys_A) ( 1577 1fno_A) 0.2887 0.2887 7.8986 ( 1 4 10) 0 0.5624 0.5624 16 16
( 3097 1jys_A) ( 1702 1g2o_A) 0.8698 0.8698 3.8294 ( 3 68 91) 0 0.8698 0.8698 16 16
( 3097 1jys_A) ( 2137 1h8l_A) 0.3125 0.2778 4.2652 ( 0 6 10) 0 0.8119 0.7219 16 18
( 3097 1jys_A) ( 2608 1iu8_A) 0.6602 0.7358 5.7072 ( 3 32 55) 0 0.6602 0.7358 16 14
( 3097 1jys_A) ( 2834 1je0_A) 0.9336 0.9336 2.8497 ( 3 79 105) 0 0.9336 0.9336 16 16
( 3097 1jys_A) ( 3019 1jqg_A) 0.3750 0.3750 4.6060 ( 0 9 15) 0 0.8120 0.8120 16 16
( 3097 1jys_A) ( 3080 1jwq_A) 0.6249 0.9086 3.7258 ( 0 25 45) 0 0.6249 0.9086 16 11
( 3097 1jys_A) ( 3097 1jys_A) 1.0000 1.0000 0.0000 ( 0 94 120) 0 1.0000 1.0000 16 16
( 3097 1jys_A) ( 3584 1lam ) 0.3124 0.2174 10.4537 ( 0 7 10) 0 0.8113 0.5650 16 23
( 3097 1jys_A) ( 3620 1lfw_A) 0.3124 0.3124 8.8087 ( 0 6 10) 0 0.6871 0.6871 16 16
( 3097 1jys_A) ( 3832 1m4l_A) 0.3748 0.3748 9.4995 ( 0 9 15) 0 0.8120 0.8120 16 16
( 3097 1jys_A) ( 4591 1obr ) 0.3125 0.2632 3.7091 ( 0 8 10) 0 0.8119 0.6840 16 19
( 3097 1jys_A) ( 4605 1odk_A) 0.9968 0.9388 2.6131 ( 3 90 120) 0 0.9968 0.9388 16 17
( 3097 1jys_A) ( 5179 1q1g_A) 0.9457 0.8572 3.3031 ( 6 85 120) 0 0.9457 0.8572 16 18
( 3097 1jys_A) ( 5416 1qq9_A) 0.2887 0.3021 8.0072 ( 2 8 10) 0 0.6842 0.7288 16 15
( 3097 1jys_A) ( 5543 1r3n_A) 0.3125 0.2778 4.6974 ( 0 5 10) 0 0.8121 0.7220 16 18
( 3097 1jys_A) ( 5701 1rtq_A) 0.3748 0.3998 8.8565 ( 0 9 15) 0 0.7494 0.7992 16 15
( 3097 1jys_A) ( 5724 1rxy_A) 0.9480 0.8586 2.8218 ( 6 86 120) 0 0.9480 0.8586 16 18
( 3097 1jys_A) ( 5727 1ryb_A) 0.6871 0.9149 3.5777 ( 1 33 55) 0 0.6871 0.9149 16 12
( 3097 1jys_A) ( 6225 1vgy_A) 0.2762 0.2555 11.1260 ( 2 7 10) 0 0.8115 0.7217 16 18
( 3097 1jys_A) ( 6233 1vhe_A) 0.3124 0.2631 9.1381 ( 0 3 10) 0 0.8123 0.6841 16 19
( 3097 1jys_A) ( 6240 1vho_A) 0.3748 0.3157 9.2883 ( 0 11 15) 0 0.8119 0.6840 16 19
( 3097 1jys_A) ( 6248 1vhw_A) 0.9731 0.9210 2.8436 ( 5 86 120) 0 0.9731 0.9210 16 17
( 3097 1jys_A) ( 6519 2pth ) 0.2500 0.3077 3.8179 ( 0 2 6) 0 0.7494 0.9214 16 13
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