------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4591 1obr ) ( 318 1b8o_A) 0.3680 0.3883 4.0296 ( 1 14 21) 0 0.7365 0.7773 19 18 ( 4591 1obr ) ( 442 1bou_B) 0.2631 0.2499 11.2630 ( 0 4 10) 0 0.7362 0.6995 19 20 ( 4591 1obr ) ( 541 1c8b_A) 0.2632 0.2778 5.3582 ( 0 3 10) 0 0.2632 0.2778 19 18 ( 4591 1obr ) ( 551 1cb0_A) 0.3139 0.3706 4.1975 ( 1 8 15) 0 0.6252 0.7353 19 16 ( 4591 1obr ) ( 583 1cfz_A) 0.4730 0.8829 3.2426 ( 1 17 36) 0 0.4737 0.8994 19 10 ( 4591 1obr ) ( 584 1cg2_A) 0.6814 0.6814 5.8764 ( 6 57 91) 0 0.7843 0.7843 19 19 ( 4591 1obr ) ( 811 1de4_C) 0.6837 0.7216 5.4159 ( 0 44 78) 0 0.6837 0.7216 19 18 ( 4591 1obr ) ( 1577 1fno_A) 0.5746 0.6775 5.0651 ( 2 28 55) 0 0.5746 0.6775 19 16 ( 4591 1obr ) ( 1702 1g2o_A) 0.2632 0.3125 5.2174 ( 0 6 10) 0 0.6838 0.8115 19 16 ( 4591 1obr ) ( 2137 1h8l_A) 0.8944 0.9440 1.9666 ( 2 94 136) 0 0.8944 0.9440 19 18 ( 4591 1obr ) ( 2608 1iu8_A) 0.5789 0.7855 3.7322 ( 0 34 55) 0 0.5789 0.7855 19 14 ( 4591 1obr ) ( 2834 1je0_A) 0.2632 0.3125 4.3476 ( 0 4 10) 0 0.6829 0.8095 19 16 ( 4591 1obr ) ( 3019 1jqg_A) 0.8421 0.9999 1.9781 ( 0 86 120) 0 0.8421 0.9999 19 16 ( 4591 1obr ) ( 3080 1jwq_A) 0.5787 0.9970 3.9738 ( 1 33 55) 0 0.5787 0.9970 19 11 ( 4591 1obr ) ( 3097 1jys_A) 0.2632 0.3125 3.7091 ( 0 8 10) 0 0.6840 0.8119 19 16 ( 4591 1obr ) ( 3584 1lam ) 0.7363 0.6085 5.1235 ( 0 55 91) 0 0.7363 0.6085 19 23 ( 4591 1obr ) ( 3620 1lfw_A) 0.6314 0.7495 4.9156 ( 0 36 66) 0 0.6314 0.7495 19 16 ( 4591 1obr ) ( 3832 1m4l_A) 0.8420 0.9998 2.5767 ( 1 81 120) 0 0.8420 0.9998 19 16 ( 4591 1obr ) ( 4591 1obr ) 1.0000 1.0000 0.0000 ( 0 126 171) 0 1.0000 1.0000 19 19 ( 4591 1obr ) ( 4605 1odk_A) 0.3158 0.3529 4.6468 ( 0 8 15) 0 0.6829 0.7625 19 17 ( 4591 1obr ) ( 5179 1q1g_A) 0.2632 0.2778 4.1815 ( 0 5 10) 0 0.6839 0.7218 19 18 ( 4591 1obr ) ( 5416 1qq9_A) 0.6299 0.7945 4.4573 ( 2 40 66) 0 0.6299 0.7945 19 15 ( 4591 1obr ) ( 5543 1r3n_A) 0.7366 0.7774 4.0124 ( 1 57 91) 0 0.7366 0.7774 19 18 ( 4591 1obr ) ( 5701 1rtq_A) 0.7230 0.8912 4.6568 ( 4 56 91) 0 0.7230 0.8912 19 15 ( 4591 1obr ) ( 5724 1rxy_A) 0.3043 0.3186 4.4284 ( 2 10 15) 0 0.6827 0.7203 19 18 ( 4591 1obr ) ( 5727 1ryb_A) 0.2105 0.3333 4.7353 ( 0 2 6) 0 0.5788 0.9154 19 12 ( 4591 1obr ) ( 6225 1vgy_A) 0.7743 0.8137 5.0353 ( 4 60 105) 0 0.7743 0.8137 19 18 ( 4591 1obr ) ( 6233 1vhe_A) 0.7367 0.7367 3.8073 ( 0 57 91) 0 0.7367 0.7367 19 19 ( 4591 1obr ) ( 6240 1vho_A) 0.7360 0.7360 3.7914 ( 2 59 91) 0 0.7360 0.7360 19 19 ( 4591 1obr ) ( 6248 1vhw_A) 0.2632 0.2941 4.8207 ( 0 6 10) 0 0.6836 0.7637 19 17 ( 4591 1obr ) ( 6519 2pth ) 0.2105 0.3077 4.8270 ( 0 2 6) 0 0.6312 0.9204 19 13 -------------------------------------------------------------------------------------------------------------------------