------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5179 1q1g_A) ( 318 1b8o_A) 0.8404 0.8404 3.7087 ( 7 88 120) 0 0.8404 0.8404 18 18 ( 5179 1q1g_A) ( 442 1bou_B) 0.2777 0.2500 9.2752 ( 0 5 10) 0 0.7213 0.6494 18 20 ( 5179 1q1g_A) ( 541 1c8b_A) 0.3309 0.3309 2.9918 ( 1 8 15) 0 0.4295 0.4295 18 18 ( 5179 1q1g_A) ( 551 1cb0_A) 0.7672 0.8564 2.7685 ( 4 64 91) 0 0.7672 0.8564 18 16 ( 5179 1q1g_A) ( 583 1cfz_A) 0.4444 0.7998 3.5512 ( 0 9 28) 0 0.4718 0.7998 18 10 ( 5179 1q1g_A) ( 584 1cg2_A) 0.2222 0.2105 3.6601 ( 0 1 6) 0 0.7210 0.6832 18 19 ( 5179 1q1g_A) ( 811 1de4_C) 0.3331 0.3331 10.4538 ( 0 6 15) 0 0.6656 0.6656 18 18 ( 5179 1q1g_A) ( 1577 1fno_A) 0.2778 0.3125 4.7490 ( 0 0 10) 0 0.4999 0.5624 18 16 ( 5179 1q1g_A) ( 1702 1g2o_A) 0.7734 0.8673 3.8245 ( 3 61 91) 0 0.8136 0.9031 18 16 ( 5179 1q1g_A) ( 2137 1h8l_A) 0.3881 0.3881 5.8753 ( 1 13 21) 0 0.7217 0.7217 18 18 ( 5179 1q1g_A) ( 2608 1iu8_A) 0.6110 0.7852 4.6187 ( 0 34 55) 0 0.6110 0.7852 18 14 ( 5179 1q1g_A) ( 2834 1je0_A) 0.8867 0.9960 3.0547 ( 3 86 120) 0 0.8867 0.9960 18 16 ( 5179 1q1g_A) ( 3019 1jqg_A) 0.3186 0.3501 4.6802 ( 2 10 15) 0 0.7207 0.8097 18 16 ( 5179 1q1g_A) ( 3080 1jwq_A) 0.5555 0.9082 4.4248 ( 0 27 45) 0 0.5555 0.9082 18 11 ( 5179 1q1g_A) ( 3097 1jys_A) 0.8572 0.9457 3.3031 ( 6 85 120) 0 0.8572 0.9457 18 16 ( 5179 1q1g_A) ( 3584 1lam ) 0.3333 0.2609 6.0832 ( 0 8 15) 0 0.6109 0.4983 18 23 ( 5179 1q1g_A) ( 3620 1lfw_A) 0.2287 0.2397 9.8050 ( 3 8 10) 0 0.6109 0.6872 18 16 ( 5179 1q1g_A) ( 3832 1m4l_A) 0.3121 0.3398 5.0390 ( 2 9 15) 0 0.7205 0.8095 18 16 ( 5179 1q1g_A) ( 4591 1obr ) 0.2778 0.2632 4.1815 ( 0 5 10) 0 0.7218 0.6839 18 19 ( 5179 1q1g_A) ( 4605 1odk_A) 0.9398 0.9938 2.3306 ( 4 101 136) 0 0.9398 0.9938 18 17 ( 5179 1q1g_A) ( 5179 1q1g_A) 1.0000 1.0000 0.0000 ( 0 117 153) 0 1.0000 1.0000 18 18 ( 5179 1q1g_A) ( 5416 1qq9_A) 0.2777 0.3332 8.7062 ( 0 5 10) 0 0.6106 0.7320 18 15 ( 5179 1q1g_A) ( 5543 1r3n_A) 0.2222 0.2222 4.3290 ( 0 1 6) 0 0.7219 0.7219 18 18 ( 5179 1q1g_A) ( 5701 1rtq_A) 0.2778 0.3333 4.7638 ( 0 5 10) 0 0.6662 0.7989 18 15 ( 5179 1q1g_A) ( 5724 1rxy_A) 0.9443 0.9443 2.3158 ( 1 96 136) 0 0.9443 0.9443 18 18 ( 5179 1q1g_A) ( 5727 1ryb_A) 0.6073 0.8895 4.7137 ( 2 31 55) 0 0.6073 0.8895 18 12 ( 5179 1q1g_A) ( 6225 1vgy_A) 0.2760 0.2760 10.3051 ( 1 7 10) 0 0.7216 0.7216 18 18 ( 5179 1q1g_A) ( 6233 1vhe_A) 0.3121 0.2991 7.1362 ( 2 9 15) 0 0.7220 0.6841 18 19 ( 5179 1q1g_A) ( 6240 1vho_A) 0.3332 0.3157 9.5505 ( 0 12 15) 0 0.7219 0.6840 18 19 ( 5179 1q1g_A) ( 6248 1vhw_A) 0.9443 0.9998 2.3891 ( 1 98 136) 0 0.9443 0.9998 18 17 ( 5179 1q1g_A) ( 6519 2pth ) 0.6078 0.8297 4.6078 ( 2 32 55) 0 0.6633 0.9064 18 13 -------------------------------------------------------------------------------------------------------------------------