------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5416 1qq9_A) ( 318 1b8o_A) 0.2667 0.2222 7.1176 ( 0 4 6) 0 0.7707 0.6543 15 18 ( 5416 1qq9_A) ( 442 1bou_B) 0.2667 0.2000 4.4228 ( 0 3 6) 0 0.7794 0.6171 15 20 ( 5416 1qq9_A) ( 541 1c8b_A) 0.4664 0.3888 7.6549 ( 0 7 21) 0 0.6639 0.5545 15 18 ( 5416 1qq9_A) ( 551 1cb0_A) 0.2667 0.2500 5.5925 ( 0 5 6) 0 0.7016 0.6639 15 16 ( 5416 1qq9_A) ( 583 1cfz_A) 0.4000 0.6000 3.1298 ( 0 6 15) 0 0.4000 0.6000 15 10 ( 5416 1qq9_A) ( 584 1cg2_A) 0.7938 0.6297 4.7412 ( 2 39 66) 0 0.7938 0.6297 15 19 ( 5416 1qq9_A) ( 811 1de4_C) 0.9317 0.7771 2.8308 ( 2 66 91) 0 0.9317 0.7771 15 18 ( 5416 1qq9_A) ( 1577 1fno_A) 0.2667 0.2500 4.6988 ( 0 5 6) 0 0.7941 0.7457 15 16 ( 5416 1qq9_A) ( 1702 1g2o_A) 0.3770 0.3660 7.5396 ( 3 13 21) 0 0.6402 0.6154 15 16 ( 5416 1qq9_A) ( 2137 1h8l_A) 0.7943 0.6643 4.8797 ( 2 40 66) 0 0.7943 0.6643 15 18 ( 5416 1qq9_A) ( 2608 1iu8_A) 0.4000 0.4285 5.2526 ( 0 7 15) 0 0.5966 0.6381 15 14 ( 5416 1qq9_A) ( 2834 1je0_A) 0.3332 0.3124 9.9678 ( 0 3 10) 0 0.7315 0.6862 15 16 ( 5416 1qq9_A) ( 3019 1jqg_A) 0.7947 0.7461 3.9586 ( 2 40 66) 0 0.7947 0.7461 15 16 ( 5416 1qq9_A) ( 3080 1jwq_A) 0.4666 0.6362 4.2937 ( 0 12 21) 0 0.5312 0.7175 15 11 ( 5416 1qq9_A) ( 3097 1jys_A) 0.3021 0.2887 8.0072 ( 2 8 10) 0 0.7288 0.6842 15 16 ( 5416 1qq9_A) ( 3584 1lam ) 0.3997 0.2608 9.6166 ( 0 6 15) 0 0.7978 0.5291 15 23 ( 5416 1qq9_A) ( 3620 1lfw_A) 0.7331 0.6873 4.0745 ( 0 36 55) 0 0.7331 0.6873 15 16 ( 5416 1qq9_A) ( 3832 1m4l_A) 0.7929 0.7448 3.8632 ( 2 37 66) 0 0.7929 0.7448 15 16 ( 5416 1qq9_A) ( 4591 1obr ) 0.7945 0.6299 4.4573 ( 2 40 66) 0 0.7945 0.6299 15 19 ( 5416 1qq9_A) ( 4605 1odk_A) 0.3289 0.2917 11.5277 ( 1 7 10) 0 0.7316 0.6462 15 17 ( 5416 1qq9_A) ( 5179 1q1g_A) 0.3332 0.2777 8.7062 ( 0 5 10) 0 0.7320 0.6106 15 18 ( 5416 1qq9_A) ( 5416 1qq9_A) 1.0000 1.0000 0.0000 ( 0 84 105) 0 1.0000 1.0000 15 15 ( 5416 1qq9_A) ( 5543 1r3n_A) 0.8631 0.7208 5.0029 ( 2 53 78) 0 0.9238 0.7739 15 18 ( 5416 1qq9_A) ( 5701 1rtq_A) 0.7970 0.7970 2.6646 ( 2 46 66) 0 0.7970 0.7970 15 15 ( 5416 1qq9_A) ( 5724 1rxy_A) 0.3332 0.2777 8.6700 ( 0 5 10) 0 0.7319 0.6105 15 18 ( 5416 1qq9_A) ( 5727 1ryb_A) 0.2667 0.3333 6.7556 ( 0 4 6) 0 0.6658 0.8306 15 12 ( 5416 1qq9_A) ( 6225 1vgy_A) 0.8625 0.7205 4.1015 ( 2 48 78) 0 0.8625 0.7205 15 18 ( 5416 1qq9_A) ( 6233 1vhe_A) 0.8525 0.6798 5.0233 ( 3 52 78) 0 0.8525 0.6798 15 19 ( 5416 1qq9_A) ( 6240 1vho_A) 0.8629 0.6831 4.9167 ( 2 52 78) 0 0.8629 0.6831 15 19 ( 5416 1qq9_A) ( 6248 1vhw_A) 0.3823 0.3431 6.7269 ( 1 6 15) 0 0.7315 0.6461 15 17 ( 5416 1qq9_A) ( 6519 2pth ) 0.2667 0.3077 6.6491 ( 0 4 6) 0 0.7265 0.8324 15 13 -------------------------------------------------------------------------------------------------------------------------