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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 541 1c8b_A) ( 318 1b8o_A) 0.2778 0.2778 5.2816 ( 0 6 10) 0 0.4998 0.4998 18 18
( 541 1c8b_A) ( 442 1bou_B) 0.2222 0.2000 4.7365 ( 0 3 6) 0 0.4443 0.3999 18 20
( 541 1c8b_A) ( 541 1c8b_A) 1.0000 1.0000 0.0000 ( 0 124 153) 0 1.0000 1.0000 18 18
( 541 1c8b_A) ( 551 1cb0_A) 0.2778 0.3125 5.3504 ( 0 6 10) 0 0.4666 0.5074 18 16
( 541 1c8b_A) ( 583 1cfz_A) 0.4444 0.7996 4.2359 ( 0 12 28) 0 0.4444 0.7999 18 10
( 541 1c8b_A) ( 584 1cg2_A) 0.2778 0.2632 4.1210 ( 0 5 10) 0 0.4444 0.4210 18 19
( 541 1c8b_A) ( 811 1de4_C) 0.3888 0.3888 7.9295 ( 0 9 21) 0 0.4327 0.4327 18 18
( 541 1c8b_A) ( 1577 1fno_A) 0.2222 0.2500 4.5592 ( 0 3 6) 0 0.3873 0.4347 18 16
( 541 1c8b_A) ( 1702 1g2o_A) 0.2778 0.3125 5.8780 ( 0 4 10) 0 0.4530 0.4872 18 16
( 541 1c8b_A) ( 2137 1h8l_A) 0.2777 0.2777 10.3874 ( 0 6 10) 0 0.3597 0.3597 18 18
( 541 1c8b_A) ( 2608 1iu8_A) 0.2777 0.3570 8.8957 ( 0 1 10) 0 0.3800 0.4716 18 14
( 541 1c8b_A) ( 2834 1je0_A) 0.3021 0.3250 3.5433 ( 1 4 15) 0 0.4997 0.5619 18 16
( 541 1c8b_A) ( 3019 1jqg_A) 0.2778 0.3125 3.7988 ( 0 4 10) 0 0.3333 0.3749 18 16
( 541 1c8b_A) ( 3080 1jwq_A) 0.3333 0.5454 3.5941 ( 0 8 15) 0 0.3333 0.5454 18 11
( 541 1c8b_A) ( 3097 1jys_A) 0.3886 0.4370 9.3491 ( 0 10 21) 0 0.4529 0.4872 18 16
( 541 1c8b_A) ( 3584 1lam ) 0.3020 0.2502 9.4378 ( 2 8 15) 0 0.4048 0.3537 18 23
( 541 1c8b_A) ( 3620 1lfw_A) 0.2778 0.3125 6.6411 ( 0 3 10) 0 0.2778 0.3125 18 16
( 541 1c8b_A) ( 3832 1m4l_A) 0.2778 0.3125 3.2321 ( 0 4 10) 0 0.4839 0.5142 18 16
( 541 1c8b_A) ( 4591 1obr ) 0.2778 0.2632 5.3582 ( 0 3 10) 0 0.2778 0.2632 18 19
( 541 1c8b_A) ( 4605 1odk_A) 0.3867 0.4089 3.3005 ( 1 10 21) 0 0.4996 0.5289 18 17
( 541 1c8b_A) ( 5179 1q1g_A) 0.3309 0.3309 2.9918 ( 1 8 15) 0 0.4295 0.4295 18 18
( 541 1c8b_A) ( 5416 1qq9_A) 0.3888 0.4664 7.6549 ( 0 7 21) 0 0.5545 0.6639 18 15
( 541 1c8b_A) ( 5543 1r3n_A) 0.2778 0.2778 5.3184 ( 0 6 10) 0 0.5542 0.5542 18 18
( 541 1c8b_A) ( 5701 1rtq_A) 0.3889 0.4666 4.8108 ( 0 11 21) 0 0.4529 0.5332 18 15
( 541 1c8b_A) ( 5724 1rxy_A) 0.2777 0.2777 10.2341 ( 0 1 10) 0 0.5549 0.5549 18 18
( 541 1c8b_A) ( 5727 1ryb_A) 0.3889 0.5833 2.5996 ( 0 11 21) 0 0.4998 0.7483 18 12
( 541 1c8b_A) ( 6225 1vgy_A) 0.2778 0.2778 4.7208 ( 0 6 10) 0 0.5541 0.5541 18 18
( 541 1c8b_A) ( 6233 1vhe_A) 0.2778 0.2632 6.3446 ( 0 6 10) 0 0.5363 0.5113 18 19
( 541 1c8b_A) ( 6240 1vho_A) 0.2778 0.2632 3.4675 ( 0 7 10) 0 0.5389 0.5135 18 19
( 541 1c8b_A) ( 6248 1vhw_A) 0.2222 0.2353 4.4502 ( 0 1 6) 0 0.4405 0.4538 18 17
( 541 1c8b_A) ( 6519 2pth ) 0.3889 0.5385 2.6339 ( 0 13 21) 0 0.3936 0.5385 18 13
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