------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5543 1r3n_A) ( 318 1b8o_A) 0.2771 0.2771 5.5977 ( 1 9 10) 0 0.7767 0.7767 18 18 ( 5543 1r3n_A) ( 442 1bou_B) 0.2778 0.2500 6.9781 ( 0 8 10) 0 0.8278 0.7467 18 20 ( 5543 1r3n_A) ( 541 1c8b_A) 0.2778 0.2778 5.3184 ( 0 6 10) 0 0.5542 0.5542 18 18 ( 5543 1r3n_A) ( 551 1cb0_A) 0.2420 0.2572 9.2167 ( 1 3 10) 0 0.6641 0.7454 18 16 ( 5543 1r3n_A) ( 583 1cfz_A) 0.4984 0.8724 4.1343 ( 1 15 36) 0 0.4984 0.8724 18 10 ( 5543 1r3n_A) ( 584 1cg2_A) 0.7773 0.7365 4.5411 ( 0 59 91) 0 0.7773 0.7365 18 19 ( 5543 1r3n_A) ( 811 1de4_C) 0.7762 0.7762 6.1549 ( 0 62 91) 0 0.7762 0.7762 18 18 ( 5543 1r3n_A) ( 1577 1fno_A) 0.6111 0.6875 2.9150 ( 0 34 55) 0 0.6111 0.6875 18 16 ( 5543 1r3n_A) ( 1702 1g2o_A) 0.2778 0.3125 5.7208 ( 0 7 10) 0 0.7522 0.8310 18 16 ( 5543 1r3n_A) ( 2137 1h8l_A) 0.7773 0.7773 4.2877 ( 1 56 91) 0 0.7773 0.7773 18 18 ( 5543 1r3n_A) ( 2608 1iu8_A) 0.6110 0.7855 3.8312 ( 0 32 55) 0 0.6110 0.7855 18 14 ( 5543 1r3n_A) ( 2834 1je0_A) 0.2767 0.3106 8.5113 ( 1 8 10) 0 0.7219 0.8120 18 16 ( 5543 1r3n_A) ( 3019 1jqg_A) 0.7775 0.8744 3.9334 ( 1 59 91) 0 0.7775 0.8744 18 16 ( 5543 1r3n_A) ( 3080 1jwq_A) 0.5555 0.9086 3.7973 ( 0 26 45) 0 0.5555 0.9086 18 11 ( 5543 1r3n_A) ( 3097 1jys_A) 0.2778 0.3125 4.6974 ( 0 5 10) 0 0.7220 0.8121 18 16 ( 5543 1r3n_A) ( 3584 1lam ) 0.7768 0.6084 5.4352 ( 1 61 91) 0 0.9251 0.7333 18 23 ( 5543 1r3n_A) ( 3620 1lfw_A) 0.7221 0.8122 3.7863 ( 0 52 78) 0 0.7221 0.8122 18 16 ( 5543 1r3n_A) ( 3832 1m4l_A) 0.7774 0.8744 3.9907 ( 1 57 91) 0 0.7774 0.8744 18 16 ( 5543 1r3n_A) ( 4591 1obr ) 0.7774 0.7366 4.0124 ( 1 57 91) 0 0.7774 0.7366 18 19 ( 5543 1r3n_A) ( 4605 1odk_A) 0.2767 0.2927 8.8750 ( 1 8 10) 0 0.7219 0.7642 18 17 ( 5543 1r3n_A) ( 5179 1q1g_A) 0.2761 0.2761 4.6783 ( 1 7 10) 0 0.7219 0.7219 18 18 ( 5543 1r3n_A) ( 5416 1qq9_A) 0.7208 0.8631 5.0029 ( 2 53 78) 0 0.7739 0.9238 18 15 ( 5543 1r3n_A) ( 5543 1r3n_A) 1.0000 1.0000 0.0000 ( 0 123 153) 0 1.0000 1.0000 18 18 ( 5543 1r3n_A) ( 5701 1rtq_A) 0.7773 0.9321 4.6273 ( 0 64 91) 0 0.7773 0.9321 18 15 ( 5543 1r3n_A) ( 5724 1rxy_A) 0.2778 0.2778 6.6451 ( 0 5 10) 0 0.7208 0.7208 18 18 ( 5543 1r3n_A) ( 5727 1ryb_A) 0.2222 0.3333 4.8366 ( 0 3 6) 0 0.6541 0.9191 18 12 ( 5543 1r3n_A) ( 6225 1vgy_A) 0.8329 0.8329 4.2147 ( 0 73 105) 0 0.8329 0.8329 18 18 ( 5543 1r3n_A) ( 6233 1vhe_A) 0.8327 0.7890 3.0579 ( 2 74 105) 0 0.8327 0.7890 18 19 ( 5543 1r3n_A) ( 6240 1vho_A) 0.7776 0.7367 3.2035 ( 1 66 91) 0 0.7776 0.7367 18 19 ( 5543 1r3n_A) ( 6248 1vhw_A) 0.2767 0.2927 8.8341 ( 1 8 10) 0 0.7219 0.7643 18 17 ( 5543 1r3n_A) ( 6519 2pth ) 0.2222 0.3077 4.7037 ( 0 4 6) 0 0.6665 0.9221 18 13 -------------------------------------------------------------------------------------------------------------------------