------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 5701 1rtq_A) ( 318 1b8o_A) 0.3333 0.2778 4.4546 ( 0 8 10) 0 0.8627 0.7206 15 18 ( 5701 1rtq_A) ( 442 1bou_B) 0.3333 0.2500 6.3896 ( 0 6 10) 0 0.9312 0.6995 15 20 ( 5701 1rtq_A) ( 541 1c8b_A) 0.4666 0.3889 4.8108 ( 0 11 21) 0 0.5332 0.4529 15 18 ( 5701 1rtq_A) ( 551 1cb0_A) 0.3333 0.3125 4.6374 ( 0 8 10) 0 0.5246 0.5149 15 16 ( 5701 1rtq_A) ( 583 1cfz_A) 0.3975 0.5819 4.2685 ( 1 10 15) 0 0.5295 0.7729 15 10 ( 5701 1rtq_A) ( 584 1cg2_A) 0.9327 0.7366 3.9080 ( 0 59 91) 0 0.9327 0.7366 15 19 ( 5701 1rtq_A) ( 811 1de4_C) 0.9330 0.7776 3.3147 ( 0 60 91) 0 0.9330 0.7776 15 18 ( 5701 1rtq_A) ( 1577 1fno_A) 0.7332 0.6874 3.7903 ( 0 34 55) 0 0.7332 0.6874 15 16 ( 5701 1rtq_A) ( 1702 1g2o_A) 0.3332 0.3124 8.9868 ( 0 5 10) 0 0.7938 0.7455 15 16 ( 5701 1rtq_A) ( 2137 1h8l_A) 0.4000 0.3333 5.8977 ( 0 7 15) 0 0.8934 0.7608 15 18 ( 5701 1rtq_A) ( 2608 1iu8_A) 0.4667 0.5000 3.6461 ( 0 13 21) 0 0.7322 0.7841 15 14 ( 5701 1rtq_A) ( 2834 1je0_A) 0.3332 0.3124 8.9269 ( 0 5 10) 0 0.7956 0.7468 15 16 ( 5701 1rtq_A) ( 3019 1jqg_A) 0.8662 0.8121 4.0255 ( 0 52 78) 0 0.8662 0.8121 15 16 ( 5701 1rtq_A) ( 3080 1jwq_A) 0.4667 0.6363 3.2427 ( 0 12 21) 0 0.4667 0.6363 15 11 ( 5701 1rtq_A) ( 3097 1jys_A) 0.3998 0.3748 8.8565 ( 0 9 15) 0 0.7992 0.7494 15 16 ( 5701 1rtq_A) ( 3584 1lam ) 0.4664 0.3043 7.5228 ( 0 9 21) 0 0.7325 0.5421 15 23 ( 5701 1rtq_A) ( 3620 1lfw_A) 0.9322 0.8742 4.3633 ( 1 59 91) 0 0.9322 0.8742 15 16 ( 5701 1rtq_A) ( 3832 1m4l_A) 0.8661 0.8121 4.1237 ( 0 50 78) 0 0.8661 0.8121 15 16 ( 5701 1rtq_A) ( 4591 1obr ) 0.8912 0.7230 4.6568 ( 4 56 91) 0 0.8912 0.7230 15 19 ( 5701 1rtq_A) ( 4605 1odk_A) 0.3332 0.2941 8.5601 ( 0 7 10) 0 0.7983 0.7050 15 17 ( 5701 1rtq_A) ( 5179 1q1g_A) 0.3333 0.2778 5.9702 ( 0 5 10) 0 0.7989 0.6662 15 18 ( 5701 1rtq_A) ( 5416 1qq9_A) 0.7970 0.7970 2.6646 ( 2 46 66) 0 0.7970 0.7970 15 15 ( 5701 1rtq_A) ( 5543 1r3n_A) 0.9321 0.7773 4.6273 ( 0 64 91) 0 0.9321 0.7773 15 18 ( 5701 1rtq_A) ( 5701 1rtq_A) 1.0000 1.0000 0.0000 ( 0 77 105) 0 1.0000 1.0000 15 15 ( 5701 1rtq_A) ( 5724 1rxy_A) 0.4000 0.3333 5.0909 ( 0 10 15) 0 0.7986 0.6661 15 18 ( 5701 1rtq_A) ( 5727 1ryb_A) 0.2667 0.3333 7.2879 ( 0 5 6) 0 0.6663 0.8322 15 12 ( 5701 1rtq_A) ( 6225 1vgy_A) 0.9330 0.7777 3.2796 ( 0 59 91) 0 0.9330 0.7777 15 18 ( 5701 1rtq_A) ( 6233 1vhe_A) 0.9323 0.7365 4.4570 ( 0 63 91) 0 0.9323 0.7365 15 19 ( 5701 1rtq_A) ( 6240 1vho_A) 0.9309 0.7361 4.2561 ( 2 65 91) 0 0.9309 0.7361 15 19 ( 5701 1rtq_A) ( 6248 1vhw_A) 0.3333 0.2941 4.7758 ( 0 6 10) 0 0.7982 0.7049 15 17 ( 5701 1rtq_A) ( 6519 2pth ) 0.2667 0.3077 7.1772 ( 0 3 6) 0 0.7325 0.8444 15 13 -------------------------------------------------------------------------------------------------------------------------