------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [5724, 318]: Comparing 1rxy_A and 1b8o_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 20 (11 H + 9 S) secondary structure elements in 1b8o_A, of which 18 satisfy the size requirements. 1.16519 [ 1.16519] ((2 . 2) (3 . 3) (4 . 4) (5 . 6) (6 . 7) (7 . 9) (8 . 10) (9 . 11) (11 . 12) (13 . 13) (14 . 14) (17 . 15) (18 . 16) (19 . 17) (20 . 18) (21 . 20)) 4.155 {6/86:120} B:0 1.18793 [ 1.18793] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 6) (6 . 7) (7 . 9) (8 . 10) (9 . 11) (13 . 13) (14 . 14) (17 . 15) (18 . 16) (19 . 17) (20 . 18) (21 . 20)) 4.615 {7/89:120} B:0 1.20273 [ 1.20273] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 6) (6 . 7) (7 . 9) (8 . 10) (10 . 11) (13 . 13) (14 . 14) (17 . 15) (18 . 16) (19 . 17) (20 . 18) (21 . 20)) 4.857 {7/84:120} B:0 1.21081 [ 1.21081] ((2 . 2) (3 . 3) (4 . 4) (5 . 6) (6 . 7) (7 . 9) (8 . 10) (9 . 11) (13 . 13) (14 . 14) (17 . 15) (18 . 16) (19 . 17) (20 . 18) (21 . 20)) 3.709 {4/77:105} B:0 1.23879 [ 1.23879] ((2 . 2) (3 . 3) (4 . 4) (5 . 6) (6 . 7) (7 . 9) (8 . 10) (10 . 11) (13 . 13) (14 . 14) (17 . 15) (18 . 16) (19 . 17) (20 . 18) (21 . 19)) 4.396 {5/69:105} B:0 SIMILARITY (1/min{score1}): 0.8582 [and 1/min{score2}: 0.8582] [5724, 442]: Comparing 1rxy_A and 1bou_B, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 22 (9 H + 13 S) secondary structure elements in 1bou_B, of which 20 satisfy the size requirements. 3.60016 [ 4.00012] ((7 . 3) (8 . 4) (9 . 6) (13 . 9) (20 . 14)) 6.676 {0/6:10} B:0 3.60043 [ 4.00032] ((3 . 11) (6 . 12) (7 . 13) (8 . 14) (11 . 15)) 8.533 {0/6:10} B:0 4.50005 [ 5.00004] ((14 . 1) (17 . 3) (18 . 4) (21 . 9)) 5.866 {0/5:6} B:0 4.50006 [ 5.00004] ((2 . 1) (9 . 6) (13 . 9) (20 . 14)) 6.100 {0/4:6} B:0 4.50006 [ 5.00004] ((3 . 11) (4 . 12) (7 . 13) (8 . 14)) 6.193 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.7211 [and 1/min{score2}: 0.6493] [5724, 541]: Comparing 1rxy_A and 1c8b_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 22 (12 H + 10 S) secondary structure elements in 1c8b_A, of which 18 satisfy the size requirements. 3.60090 [ 3.60090] ((2 . 7) (6 . 11) (7 . 13) (8 . 14) (19 . 22)) 10.234 {0/1:10} B:0 3.68325 [ 3.68325] ((1 . 1) (4 . 2) (5 . 3) (6 . 5) (7 . 6)) 8.608 {1/5:10} B:0 4.13247 [ 4.13247] ((1 . 1) (2 . 2) (6 . 5) (7 . 6) (8 . 7)) 10.904 {2/6:10} B:0 4.50008 [ 4.50008] ((5 . 2) (6 . 3) (13 . 9) (20 . 16)) 6.628 {0/5:6} B:0 4.50009 [ 4.50009] ((5 . 2) (10 . 7) (14 . 11) (17 . 13)) 6.841 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.5549 [and 1/min{score2}: 0.5549] [5724, 551]: Comparing 1rxy_A and 1cb0_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 22 (9 H + 13 S) secondary structure elements in 1cb0_A, of which 16 satisfy the size requirements. 1.32314 [ 1.19485] ((2 . 1) (4 . 3) (5 . 4) (6 . 5) (7 . 7) (8 . 8) (10 . 10) (13 . 12) (14 . 14) (17 . 15) (18 . 16) (19 . 17) (20 . 18) (21 . 20)) 3.715 {5/66:91} B:0 4.50004 [ 4.00006] ((10 . 1) (14 . 5) (17 . 7) (21 . 12)) 5.641 {0/3:6} B:0 4.50007 [ 4.00010] ((10 . 1) (17 . 7) (18 . 8) (21 . 12)) 6.407 {0/4:6} B:0 4.50020 [ 4.00028] ((2 . 10) (6 . 14) (7 . 15) (10 . 18)) 8.314 {0/3:6} B:0 4.50029 [ 4.00042] ((2 . 5) (10 . 14) (14 . 16) (19 . 20)) 9.158 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.7641 [and 1/min{score2}: 0.8369] [5724, 583]: Comparing 1rxy_A and 1cfz_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 14 (7 H + 7 S) secondary structure elements in 1cfz_A, of which 10 satisfy the size requirements. 3.68993 [ 3.64173] ((2 . 1) (3 . 2) (6 . 4) (7 . 5) (8 . 6) (9 . 7) (17 . 8) (19 . 9) (20 . 10) (21 . 12)) 6.897 {8/22:45} B:0 4.50036 [ 2.50211] ((4 . 6) (5 . 7) (7 . 9) (8 . 10)) 9.641 {0/0:6} B:0 4.50044 [ 2.50256] ((3 . 5) (4 . 6) (7 . 9) (8 . 10)) 10.125 {0/2:6} B:0 4.50066 [ 2.50387] ((11 . 2) (14 . 7) (17 . 9) (21 . 12)) 11.225 {0/2:6} B:0 4.50079 [ 2.50458] ((3 . 5) (5 . 7) (7 . 9) (8 . 10)) 11.710 {0/2:6} B:0 SIMILARITY (1/min{score1}): 0.2939 [and 1/min{score2}: 0.4000] [5724, 584]: Comparing 1rxy_A and 1cg2_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 33 (12 H + 21 S) secondary structure elements in 1cg2_A, of which 19 satisfy the size requirements. 4.50005 [ 4.75004] ((3 . 2) (6 . 3) (8 . 5) (18 . 15)) 5.956 {0/5:6} B:0 4.50017 [ 4.75014] ((8 . 4) (14 . 10) (17 . 12) (18 . 13)) 7.958 {0/3:6} B:0 4.50018 [ 4.75015] ((3 . 2) (6 . 3) (8 . 5) (13 . 9)) 8.115 {0/3:6} B:0 4.50025 [ 4.75021] ((4 . 4) (5 . 5) (7 . 9) (14 . 15)) 8.753 {0/2:6} B:0 4.50026 [ 4.75022] ((13 . 2) (19 . 9) (20 . 10) (21 . 12)) 8.908 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.7207 [and 1/min{score2}: 0.6830] [5724, 811]: Comparing 1rxy_A and 1de4_C, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 40 (23 H + 17 S) secondary structure elements in 1de4_C, of which 18 satisfy the size requirements. 3.60009 [ 3.60009] ((6 . 21) (11 . 24) (19 . 30) (20 . 31) (21 . 33)) 5.835 {0/2:10} B:0 3.60102 [ 3.60102] ((2 . 21) (6 . 23) (7 . 24) (9 . 27) (19 . 33)) 10.558 {0/4:10} B:0 3.60111 [ 3.60111] ((2 . 21) (6 . 23) (7 . 24) (8 . 26) (19 . 33)) 10.786 {0/2:10} B:0 3.64077 [ 3.64077] ((7 . 22) (11 . 24) (13 . 28) (20 . 31) (21 . 33)) 6.229 {1/6:10} B:0 3.79466 [ 3.79466] ((3 . 22) (7 . 24) (13 . 28) (19 . 32) (21 . 33)) 12.042 {2/8:10} B:0 SIMILARITY (1/min{score1}): 0.6814 [and 1/min{score2}: 0.6814] [5724, 1577]: Comparing 1rxy_A and 1fno_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 31 (14 H + 17 S) secondary structure elements in 1fno_A, of which 16 satisfy the size requirements. 4.50005 [ 4.00007] ((3 . 2) (6 . 3) (8 . 5) (20 . 15)) 5.895 {0/3:6} B:0 4.50034 [ 4.00048] ((2 . 10) (3 . 11) (4 . 12) (6 . 15)) 9.475 {0/4:6} B:0 4.50075 [ 4.00106] ((7 . 2) (10 . 4) (17 . 9) (19 . 11)) 11.557 {0/0:6} B:0 4.54447 [ 4.06277] ((1 . 11) (17 . 26) (19 . 27) (21 . 31)) 13.106 {1/5:6} B:0 4.80608 [ 4.41363] ((3 . 2) (6 . 5) (10 . 10) (13 . 11)) 5.876 {1/3:6} B:0 SIMILARITY (1/min{score1}): 0.4996 [and 1/min{score2}: 0.5617] [5724, 1702]: Comparing 1rxy_A and 1g2o_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 21 (12 H + 9 S) secondary structure elements in 1g2o_A, of which 16 satisfy the size requirements. 1.21341 [ 1.08557] ((1 . 1) (2 . 2) (4 . 5) (5 . 7) (6 . 8) (7 . 11) (8 . 12) (10 . 13) (13 . 14) (14 . 15) (17 . 16) (18 . 17) (19 . 18) (20 . 19) (21 . 21)) 4.910 {4/74:105} B:0 1.28701 [ 1.14470] ((2 . 2) (4 . 5) (5 . 7) (6 . 8) (7 . 11) (8 . 12) (9 . 13) (13 . 14) (14 . 15) (17 . 16) (18 . 17) (19 . 18) (20 . 19) (21 . 21)) 3.771 {2/67:91} B:0 3.61342 [ 3.21904] ((1 . 1) (14 . 13) (17 . 14) (18 . 15) (20 . 19)) 8.428 {1/8:10} B:0 4.50001 [ 4.00002] ((1 . 1) (14 . 13) (18 . 17) (20 . 19)) 3.993 {0/5:6} B:0 4.50004 [ 4.00006] ((10 . 5) (14 . 8) (17 . 11) (21 . 14)) 5.673 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.8387 [and 1/min{score2}: 0.9219] [5724, 2137]: Comparing 1rxy_A and 1h8l_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 29 (13 H + 16 S) secondary structure elements in 1h8l_A, of which 18 satisfy the size requirements. 3.00023 [ 3.00023] ((2 . 7) (7 . 10) (8 . 11) (9 . 12) (14 . 16) (21 . 21)) 6.335 {0/7:15} B:0 3.00646 [ 3.00646] ((2 . 4) (3 . 5) (6 . 7) (13 . 13) (18 . 16) (20 . 19)) 5.786 {1/11:15} B:0 3.00659 [ 3.00659] ((3 . 5) (13 . 13) (18 . 16) (19 . 18) (20 . 19) (21 . 21)) 6.735 {1/11:15} B:0 3.01420 [ 3.01420] ((2 . 4) (3 . 5) (6 . 7) (18 . 16) (20 . 19) (21 . 20)) 6.019 {1/9:15} B:0 3.09658 [ 3.09658] ((2 . 4) (3 . 5) (13 . 13) (18 . 16) (19 . 18) (20 . 19)) 5.777 {2/11:15} B:0 SIMILARITY (1/min{score1}): 0.7200 [and 1/min{score2}: 0.7200] [5724, 2608]: Comparing 1rxy_A and 1iu8_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 16 (6 H + 10 S) secondary structure elements in 1iu8_A, of which 14 satisfy the size requirements. 2.57166 [ 2.00049] ((6 . 3) (7 . 4) (8 . 5) (9 . 6) (10 . 7) (13 . 11) (21 . 16)) 5.670 {0/15:21} B:0 3.00011 [ 2.33358] ((2 . 1) (6 . 3) (7 . 4) (8 . 5) (13 . 11) (14 . 12)) 5.333 {0/9:15} B:0 3.00028 [ 2.33394] ((6 . 3) (7 . 4) (8 . 5) (13 . 11) (14 . 12) (21 . 16)) 6.696 {0/10:15} B:0 4.50003 [ 3.50007] ((14 . 3) (17 . 4) (18 . 5) (21 . 11)) 5.284 {0/4:6} B:0 4.50005 [ 3.50010] ((10 . 1) (14 . 3) (17 . 4) (21 . 11)) 5.829 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.5550 [and 1/min{score2}: 0.7122] [5724, 2834]: Comparing 1rxy_A and 1je0_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 17 (8 H + 9 S) secondary structure elements in 1je0_A, of which 16 satisfy the size requirements. 1.13293 [ 1.01122] ((2 . 1) (3 . 2) (4 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (11 . 10) (13 . 11) (14 . 12) (17 . 13) (18 . 14) (19 . 15) (20 . 16) (21 . 17)) 2.802 {4/87:120} B:0 1.13478 [ 1.01382] ((2 . 1) (3 . 2) (4 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (10 . 9) (11 . 10) (13 . 11) (14 . 12) (17 . 13) (18 . 14) (19 . 15) (20 . 16) (21 . 17)) 3.572 {4/83:120} B:0 1.20344 [ 1.07156] ((2 . 1) (3 . 2) (4 . 3) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (11 . 10) (13 . 11) (14 . 12) (17 . 13) (18 . 14) (19 . 15) (20 . 16) (21 . 17)) 2.738 {3/77:105} B:0 3.60029 [ 3.20041] ((10 . 1) (14 . 6) (17 . 7) (20 . 9) (21 . 11)) 7.699 {0/7:10} B:0 3.60069 [ 3.20098] ((7 . 7) (11 . 10) (13 . 11) (14 . 12) (19 . 17)) 9.573 {0/9:10} B:0 SIMILARITY (1/min{score1}): 0.8827 [and 1/min{score2}: 0.9889] [5724, 3019]: Comparing 1rxy_A and 1jqg_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 26 (14 H + 12 S) secondary structure elements in 1jqg_A, of which 16 satisfy the size requirements. 2.63083 [ 2.36864] ((2 . 11) (3 . 12) (13 . 21) (18 . 22) (19 . 24) (20 . 25) (21 . 26)) 5.774 {2/14:21} B:0 2.65022 [ 2.39506] ((2 . 11) (3 . 12) (6 . 14) (18 . 22) (19 . 24) (20 . 25) (21 . 26)) 4.781 {2/13:21} B:0 3.00009 [ 2.66680] ((2 . 14) (7 . 18) (8 . 19) (9 . 20) (13 . 21) (14 . 22)) 5.026 {0/9:15} B:0 3.60010 [ 3.20014] ((2 . 14) (7 . 18) (13 . 21) (14 . 22) (21 . 26)) 5.858 {0/6:10} B:0 3.60021 [ 3.20029] ((2 . 14) (7 . 18) (10 . 20) (13 . 21) (14 . 22)) 7.078 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.7206 [and 1/min{score2}: 0.8095] [5724, 3080]: Comparing 1rxy_A and 1jwq_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 12 (6 H + 6 S) secondary structure elements in 1jwq_A, of which 11 satisfy the size requirements. 1.80022 [ 1.10096] ((2 . 1) (3 . 2) (6 . 3) (7 . 4) (8 . 5) (9 . 6) (13 . 7) (14 . 8) (20 . 10) (21 . 12)) 4.278 {0/25:45} B:0 4.50010 [ 2.75042] ((3 . 2) (4 . 3) (6 . 5) (13 . 11)) 6.917 {0/4:6} B:0 4.50010 [ 2.75043] ((10 . 1) (14 . 3) (17 . 4) (21 . 7)) 6.948 {0/3:6} B:0 4.50027 [ 2.75118] ((9 . 1) (13 . 2) (14 . 3) (19 . 7)) 8.961 {0/3:6} B:0 4.50028 [ 2.75124] ((7 . 2) (10 . 6) (13 . 7) (14 . 8)) 9.078 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.5555 [and 1/min{score2}: 0.9083] [5724, 3097]: Comparing 1rxy_A and 1jys_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 18 (7 H + 11 S) secondary structure elements in 1jys_A, of which 16 satisfy the size requirements. 1.16463 [ 1.05480] ((2 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (7 . 6) (8 . 7) (9 . 8) (10 . 9) (13 . 12) (14 . 13) (17 . 14) (18 . 15) (19 . 16) (20 . 17) (21 . 18)) 2.822 {6/86:120} B:0 1.21223 [ 1.08393] ((2 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (7 . 6) (8 . 7) (9 . 8) (10 . 9) (13 . 12) (14 . 13) (18 . 15) (19 . 16) (20 . 17) (21 . 18)) 2.359 {4/74:105} B:0 3.60024 [ 3.20034] ((1 . 2) (5 . 4) (7 . 6) (13 . 12) (14 . 13)) 7.375 {0/7:10} B:0 4.37308 [ 4.17084] ((4 . 4) (7 . 6) (13 . 12) (14 . 13) (21 . 18)) 4.208 {3/8:10} B:0 4.50006 [ 4.00009] ((2 . 8) (6 . 13) (7 . 14) (13 . 18)) 6.259 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.8586 [and 1/min{score2}: 0.9480] [5724, 3584]: Comparing 1rxy_A and 1lam, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 38 (17 H + 21 S) secondary structure elements in 1lam, of which 23 satisfy the size requirements. 3.00095 [ 3.83379] ((2 . 19) (7 . 25) (13 . 29) (14 . 30) (20 . 34) (21 . 38)) 9.064 {0/8:15} B:0 3.60018 [ 4.60009] ((6 . 22) (13 . 29) (19 . 33) (20 . 34) (21 . 38)) 6.895 {0/6:10} B:0 3.60023 [ 4.60011] ((6 . 22) (13 . 29) (14 . 30) (20 . 34) (21 . 38)) 7.245 {0/7:10} B:0 3.60023 [ 4.60011] ((6 . 22) (14 . 30) (19 . 33) (20 . 34) (21 . 38)) 7.304 {0/6:10} B:0 3.60173 [ 4.60083] ((6 . 22) (8 . 24) (14 . 30) (19 . 33) (21 . 38)) 12.063 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.6654 [and 1/min{score2}: 0.5214] [5724, 3620]: Comparing 1rxy_A and 1lfw_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 38 (14 H + 24 S) secondary structure elements in 1lfw_A, of which 16 satisfy the size requirements. 4.50001 [ 4.00001] ((3 . 4) (4 . 5) (5 . 6) (6 . 7)) 3.915 {0/1:6} B:0 4.50006 [ 4.00008] ((10 . 7) (17 . 12) (18 . 13) (20 . 15)) 6.136 {0/3:6} B:0 4.50014 [ 4.00020] ((14 . 11) (17 . 12) (18 . 13) (20 . 15)) 7.610 {0/5:6} B:0 4.50028 [ 4.00040] ((4 . 6) (5 . 7) (7 . 10) (14 . 15)) 9.043 {0/2:6} B:0 4.50028 [ 4.00040] ((13 . 32) (14 . 33) (18 . 37) (19 . 38)) 9.064 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.6138 [and 1/min{score2}: 0.6871] [5724, 3832]: Comparing 1rxy_A and 1m4l_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 18 (10 H + 8 S) secondary structure elements in 1m4l_A, of which 16 satisfy the size requirements. 3.00929 [ 2.67985] ((3 . 5) (6 . 7) (18 . 14) (19 . 16) (20 . 17) (21 . 18)) 4.739 {1/10:15} B:0 3.20410 [ 2.94248] ((2 . 4) (3 . 5) (18 . 14) (19 . 16) (20 . 17) (21 . 18)) 5.055 {2/9:15} B:0 3.60002 [ 3.20003] ((2 . 7) (7 . 10) (8 . 11) (9 . 12) (13 . 13)) 3.985 {0/6:10} B:0 4.50005 [ 4.00006] ((2 . 7) (7 . 10) (13 . 13) (14 . 14)) 5.746 {0/4:6} B:0 4.50010 [ 4.00014] ((3 . 6) (10 . 11) (17 . 16) (18 . 17)) 6.910 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.7216 [and 1/min{score2}: 0.8115] [5724, 4591]: Comparing 1rxy_A and 1obr, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 21 (13 H + 8 S) secondary structure elements in 1obr, of which 19 satisfy the size requirements. 3.13834 [ 3.28579] ((2 . 5) (3 . 6) (6 . 8) (18 . 15) (19 . 17) (20 . 18)) 4.428 {2/10:15} B:0 3.60096 [ 3.80081] ((2 . 8) (7 . 11) (10 . 13) (14 . 15) (21 . 21)) 10.401 {0/6:10} B:0 3.62229 [ 3.81898] ((3 . 6) (18 . 15) (19 . 17) (20 . 18) (21 . 19)) 6.821 {1/7:10} B:0 4.50001 [ 4.75001] ((3 . 2) (4 . 3) (5 . 4) (6 . 5)) 3.640 {0/1:6} B:0 4.50005 [ 4.75004] ((2 . 8) (7 . 11) (13 . 14) (14 . 15)) 5.874 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.7203 [and 1/min{score2}: 0.6827] [5724, 4605]: Comparing 1rxy_A and 1odk_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 19 (9 H + 10 S) secondary structure elements in 1odk_A, of which 17 satisfy the size requirements. 1.07179 [ 1.01532] ((2 . 2) (3 . 3) (4 . 4) (5 . 6) (6 . 7) (7 . 8) (8 . 9) (9 . 10) (10 . 11) (11 . 12) (13 . 13) (14 . 14) (17 . 15) (18 . 16) (19 . 17) (20 . 18) (21 . 19)) 1.900 {5/100:136} B:0 3.79385 [ 3.62586] ((3 . 8) (7 . 12) (9 . 14) (11 . 15) (17 . 19)) 9.856 {2/8:10} B:0 4.50006 [ 4.25008] ((4 . 11) (6 . 14) (7 . 15) (13 . 19)) 6.252 {0/4:6} B:0 4.50007 [ 4.25009] ((10 . 2) (14 . 7) (17 . 8) (21 . 13)) 6.463 {0/4:6} B:0 4.50008 [ 4.25009] ((2 . 11) (6 . 14) (7 . 15) (13 . 19)) 6.590 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.9330 [and 1/min{score2}: 0.9849] [5724, 5179]: Comparing 1rxy_A and 1q1g_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 19 (8 H + 11 S) secondary structure elements in 1q1g_A, of which 18 satisfy the size requirements. 1.05894 [ 1.05894] ((2 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (7 . 6) (8 . 7) (9 . 8) (10 . 9) (11 . 10) (13 . 12) (14 . 13) (17 . 14) (18 . 15) (19 . 16) (20 . 17) (21 . 19)) 2.316 {1/96:136} B:0 1.12512 [ 1.12512] ((2 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 5) (7 . 6) (8 . 7) (9 . 8) (10 . 9) (11 . 10) (13 . 12) (14 . 13) (18 . 15) (19 . 16) (20 . 17) (21 . 19)) 2.360 {1/84:120} B:0 3.60022 [ 3.60022] ((2 . 8) (4 . 9) (6 . 13) (7 . 14) (13 . 19)) 7.199 {0/6:10} B:0 3.60038 [ 3.60038] ((1 . 2) (5 . 4) (7 . 6) (14 . 13) (21 . 19)) 8.275 {0/6:10} B:0 4.50006 [ 4.50006] ((10 . 1) (14 . 5) (17 . 6) (21 . 12)) 6.180 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.9443 [and 1/min{score2}: 0.9443] [5724, 5416]: Comparing 1rxy_A and 1qq9_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 18 (10 H + 8 S) secondary structure elements in 1qq9_A, of which 15 satisfy the size requirements. 3.60046 [ 3.00080] ((2 . 5) (6 . 7) (7 . 9) (17 . 17) (19 . 18)) 8.670 {0/5:10} B:0 3.60094 [ 3.00163] ((2 . 5) (6 . 7) (7 . 9) (8 . 11) (19 . 18)) 10.361 {0/2:10} B:0 3.62345 [ 3.04010] ((10 . 5) (14 . 7) (17 . 9) (19 . 10) (21 . 13)) 11.353 {1/7:10} B:0 4.50011 [ 3.75019] ((3 . 2) (4 . 3) (5 . 4) (13 . 10)) 7.160 {0/3:6} B:0 4.50018 [ 3.75032] ((3 . 2) (6 . 3) (8 . 5) (17 . 13)) 8.133 {0/4:6} B:0 SIMILARITY (1/min{score1}): 0.6105 [and 1/min{score2}: 0.7319] [5724, 5543]: Comparing 1rxy_A and 1r3n_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 33 (15 H + 18 S) secondary structure elements in 1r3n_A, of which 18 satisfy the size requirements. 3.60016 [ 3.60016] ((3 . 4) (4 . 5) (5 . 6) (6 . 7) (18 . 15)) 6.645 {0/5:10} B:0 3.79331 [ 3.79331] ((2 . 13) (18 . 29) (19 . 30) (20 . 31) (21 . 33)) 6.401 {1/4:10} B:0 4.50013 [ 4.50013] ((7 . 14) (8 . 15) (19 . 27) (20 . 29)) 7.458 {0/1:6} B:0 4.50042 [ 4.50042] ((7 . 27) (8 . 29) (9 . 31) (13 . 33)) 10.035 {0/4:6} B:0 4.50050 [ 4.50050] ((5 . 5) (6 . 6) (10 . 9) (13 . 10)) 10.470 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.7208 [and 1/min{score2}: 0.7208] [5724, 5701]: Comparing 1rxy_A and 1rtq_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 20 (11 H + 9 S) secondary structure elements in 1rtq_A, of which 15 satisfy the size requirements. 3.00009 [ 2.50016] ((3 . 3) (4 . 4) (5 . 5) (6 . 8) (13 . 13) (21 . 20)) 5.091 {0/10:15} B:0 3.60010 [ 3.00018] ((10 . 6) (14 . 8) (17 . 10) (18 . 11) (21 . 13)) 5.982 {0/5:10} B:0 3.60047 [ 3.00080] ((1 . 3) (4 . 4) (5 . 5) (19 . 15) (21 . 20)) 8.685 {0/6:10} B:0 3.60060 [ 3.00104] ((2 . 6) (6 . 8) (7 . 10) (14 . 14) (19 . 20)) 9.258 {0/5:10} B:0 3.60074 [ 3.00128] ((2 . 6) (6 . 8) (7 . 10) (9 . 12) (19 . 20)) 9.751 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.6661 [and 1/min{score2}: 0.7986] [5724, 5724]: Comparing 1rxy_A and 1rxy_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (13 . 13) (14 . 14) (17 . 17) (18 . 18) (19 . 19) (20 . 20) (21 . 21)) 0.000 {0/115:153} B:0 3.60022 [ 3.60022] ((3 . 1) (5 . 5) (7 . 7) (14 . 14) (21 . 21)) 7.232 {0/6:10} B:0 3.60022 [ 3.60022] ((1 . 3) (5 . 5) (7 . 7) (14 . 14) (21 . 21)) 7.232 {0/6:10} B:0 4.50006 [ 4.50006] ((9 . 2) (14 . 6) (17 . 7) (21 . 13)) 6.205 {0/4:6} B:0 4.50006 [ 4.50006] ((2 . 9) (6 . 14) (7 . 17) (13 . 21)) 6.205 {0/4:6} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [5724, 5727]: Comparing 1rxy_A and 1ryb_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 14 (7 H + 7 S) secondary structure elements in 1ryb_A, of which 12 satisfy the size requirements. 1.64532 [ 1.12018] ((2 . 1) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 9) (9 . 10) (19 . 11) (20 . 12) (21 . 14)) 4.381 {2/32:55} B:0 1.82043 [ 1.26470] ((2 . 1) (3 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 9) (9 . 10) (19 . 11) (20 . 12) (21 . 14)) 3.570 {2/24:45} B:0 4.50005 [ 3.00017] ((8 . 1) (19 . 11) (20 . 12) (21 . 14)) 5.912 {0/0:6} B:0 4.50008 [ 3.00027] ((5 . 4) (6 . 5) (9 . 9) (13 . 11)) 6.602 {0/4:6} B:0 4.50036 [ 3.00121] ((2 . 1) (10 . 9) (14 . 12) (17 . 14)) 9.626 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.6078 [and 1/min{score2}: 0.8927] [5724, 6225]: Comparing 1rxy_A and 1vgy_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 30 (11 H + 19 S) secondary structure elements in 1vgy_A, of which 18 satisfy the size requirements. 4.50001 [ 4.50001] ((3 . 2) (4 . 3) (5 . 4) (6 . 5)) 3.768 {0/1:6} B:0 4.50008 [ 4.50008] ((1 . 9) (2 . 10) (3 . 11) (4 . 12)) 6.639 {0/3:6} B:0 4.50009 [ 4.50009] ((1 . 11) (2 . 12) (19 . 27) (21 . 30)) 6.735 {0/0:6} B:0 4.50016 [ 4.50016] ((7 . 9) (9 . 13) (14 . 26) (19 . 30)) 7.802 {0/6:6} B:0 4.50025 [ 4.50025] ((5 . 3) (6 . 4) (8 . 7) (9 . 8)) 8.769 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.7214 [and 1/min{score2}: 0.7214] [5724, 6233]: Comparing 1rxy_A and 1vhe_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 30 (12 H + 18 S) secondary structure elements in 1vhe_A, of which 19 satisfy the size requirements. 3.60006 [ 3.80005] ((3 . 18) (7 . 20) (8 . 21) (10 . 22) (13 . 24)) 5.203 {0/6:10} B:0 3.60006 [ 3.80005] ((3 . 2) (4 . 3) (5 . 4) (6 . 5) (20 . 21)) 5.206 {0/4:10} B:0 3.60069 [ 3.80059] ((3 . 18) (7 . 20) (13 . 24) (14 . 25) (19 . 29)) 9.589 {0/7:10} B:0 3.60072 [ 3.80061] ((3 . 2) (4 . 3) (5 . 4) (6 . 5) (21 . 20)) 9.687 {0/4:10} B:0 3.62260 [ 3.81925] ((17 . 24) (18 . 25) (19 . 26) (20 . 27) (21 . 29)) 8.833 {1/7:10} B:0 SIMILARITY (1/min{score1}): 0.7739 [and 1/min{score2}: 0.7339] [5724, 6240]: Comparing 1rxy_A and 1vho_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 26 (9 H + 17 S) secondary structure elements in 1vho_A, of which 19 satisfy the size requirements. 3.60007 [ 3.80006] ((3 . 2) (4 . 3) (5 . 4) (6 . 5) (20 . 19)) 5.501 {0/4:10} B:0 3.60018 [ 3.80015] ((5 . 14) (7 . 16) (10 . 20) (14 . 22) (19 . 26)) 6.813 {0/7:10} B:0 3.60019 [ 3.80016] ((3 . 16) (7 . 18) (10 . 20) (13 . 21) (14 . 22)) 6.964 {0/5:10} B:0 4.50008 [ 4.75007] ((1 . 18) (2 . 19) (7 . 23) (8 . 24)) 6.553 {0/3:6} B:0 4.50009 [ 4.75007] ((17 . 18) (18 . 19) (20 . 20) (21 . 21)) 6.772 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.7219 [and 1/min{score2}: 0.6839] [5724, 6248]: Comparing 1rxy_A and 1vhw_A, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 18 (8 H + 10 S) secondary structure elements in 1vhw_A, of which 17 satisfy the size requirements. 1.05928 [ 1.00054] ((2 . 1) (3 . 2) (4 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (10 . 10) (11 . 11) (13 . 12) (14 . 13) (17 . 14) (18 . 15) (19 . 16) (20 . 17) (21 . 18)) 2.325 {2/98:136} B:0 3.60013 [ 3.40015] ((2 . 9) (4 . 10) (6 . 13) (7 . 14) (13 . 18)) 6.283 {0/6:10} B:0 3.60827 [ 3.40981] ((1 . 2) (7 . 7) (11 . 11) (13 . 12) (14 . 13)) 6.354 {1/9:10} B:0 4.50006 [ 4.25008] ((2 . 10) (6 . 13) (7 . 14) (13 . 18)) 6.258 {0/3:6} B:0 4.50007 [ 4.25009] ((9 . 1) (14 . 6) (17 . 7) (21 . 12)) 6.435 {0/5:6} B:0 SIMILARITY (1/min{score1}): 0.9440 [and 1/min{score2}: 0.9995] [5724, 6519]: Comparing 1rxy_A and 2pth, based on their crossing files. There are 21 (10 H + 11 S) secondary structure elements in 1rxy_A, of which 18 satisfy the size requirements. There are 15 (8 H + 7 S) secondary structure elements in 2pth, of which 13 satisfy the size requirements. 1.64530 [ 1.20504] ((2 . 1) (3 . 2) (4 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 9) (9 . 10) (19 . 11) (20 . 12) (21 . 14)) 4.325 {2/32:55} B:0 1.81774 [ 1.34537] ((2 . 1) (3 . 2) (4 . 3) (5 . 5) (6 . 6) (7 . 7) (8 . 9) (14 . 10) (20 . 12) (21 . 14)) 5.123 {2/25:45} B:0 3.60033 [ 2.60088] ((5 . 3) (6 . 5) (9 . 9) (13 . 11) (19 . 15)) 7.980 {0/6:10} B:0 3.79322 [ 3.03427] ((2 . 1) (3 . 2) (5 . 5) (6 . 6) (7 . 11)) 4.219 {1/4:10} B:0 4.50004 [ 3.25011] ((8 . 1) (19 . 11) (20 . 12) (21 . 14)) 5.670 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.6633 [and 1/min{score2}: 0.9066] -------------------------------------------------------------------------------------------------------------------------