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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 5727 1ryb_A) ( 318 1b8o_A) 0.9930 0.6657 6.3356 ( 1 40 66) 0 0.9930 0.6657 12 18
( 5727 1ryb_A) ( 442 1bou_B) 0.3333 0.2000 6.1870 ( 0 0 6) 0 0.9138 0.5498 12 20
( 5727 1ryb_A) ( 541 1c8b_A) 0.5833 0.3889 2.5996 ( 0 11 21) 0 0.7483 0.4998 12 18
( 5727 1ryb_A) ( 551 1cb0_A) 0.7955 0.6153 5.4526 ( 2 25 45) 0 0.8280 0.6237 12 16
( 5727 1ryb_A) ( 583 1cfz_A) 0.7410 0.8783 4.0473 ( 1 16 36) 0 0.7410 0.8783 12 10
( 5727 1ryb_A) ( 584 1cg2_A) 0.3333 0.2105 7.9681 ( 0 0 6) 0 0.9146 0.5787 12 19
( 5727 1ryb_A) ( 811 1de4_C) 0.3430 0.2636 4.6376 ( 1 4 10) 0 0.9123 0.6105 12 18
( 5727 1ryb_A) ( 1577 1fno_A) 0.3333 0.2500 6.7359 ( 0 0 6) 0 0.4995 0.3749 12 16
( 5727 1ryb_A) ( 1702 1g2o_A) 0.8854 0.6796 5.4760 ( 2 30 55) 0 0.8854 0.6796 12 16
( 5727 1ryb_A) ( 2137 1h8l_A) 0.3771 0.2714 11.3648 ( 1 5 10) 0 0.9155 0.6110 12 18
( 5727 1ryb_A) ( 2608 1iu8_A) 0.7494 0.6426 4.9701 ( 0 14 36) 0 0.7494 0.6426 12 14
( 5727 1ryb_A) ( 2834 1je0_A) 0.8924 0.6815 4.7675 ( 2 32 55) 0 0.8924 0.6815 12 16
( 5727 1ryb_A) ( 3019 1jqg_A) 0.4163 0.3124 9.5710 ( 0 4 10) 0 0.9159 0.6873 12 16
( 5727 1ryb_A) ( 3080 1jwq_A) 0.6615 0.7193 4.7836 ( 1 16 28) 0 0.6615 0.7193 12 11
( 5727 1ryb_A) ( 3097 1jys_A) 0.9149 0.6871 3.5777 ( 1 33 55) 0 0.9149 0.6871 12 16
( 5727 1ryb_A) ( 3584 1lam ) 0.4162 0.2174 9.6657 ( 0 7 10) 0 0.9951 0.5215 12 23
( 5727 1ryb_A) ( 3620 1lfw_A) 0.4161 0.3124 10.3759 ( 0 5 10) 0 0.7497 0.5624 12 16
( 5727 1ryb_A) ( 3832 1m4l_A) 0.4167 0.3125 3.0822 ( 0 4 10) 0 0.9159 0.6873 12 16
( 5727 1ryb_A) ( 4591 1obr ) 0.3333 0.2105 4.7353 ( 0 2 6) 0 0.9154 0.5788 12 19
( 5727 1ryb_A) ( 4605 1odk_A) 0.8929 0.6427 4.1663 ( 2 32 55) 0 0.8929 0.6427 12 17
( 5727 1ryb_A) ( 5179 1q1g_A) 0.8895 0.6073 4.7137 ( 2 31 55) 0 0.8895 0.6073 12 18
( 5727 1ryb_A) ( 5416 1qq9_A) 0.3333 0.2667 6.7556 ( 0 4 6) 0 0.8306 0.6658 12 15
( 5727 1ryb_A) ( 5543 1r3n_A) 0.3333 0.2222 4.8366 ( 0 3 6) 0 0.9191 0.6541 12 18
( 5727 1ryb_A) ( 5701 1rtq_A) 0.3333 0.2667 7.2879 ( 0 5 6) 0 0.8322 0.6663 12 15
( 5727 1ryb_A) ( 5724 1rxy_A) 0.8927 0.6078 4.3809 ( 2 32 55) 0 0.8927 0.6078 12 18
( 5727 1ryb_A) ( 5727 1ryb_A) 1.0000 1.0000 0.0000 ( 0 47 66) 0 1.0000 1.0000 12 12
( 5727 1ryb_A) ( 6225 1vgy_A) 0.3333 0.2222 8.3315 ( 0 0 6) 0 0.9155 0.6110 12 18
( 5727 1ryb_A) ( 6233 1vhe_A) 0.4163 0.2631 9.0431 ( 0 4 10) 0 0.9163 0.5789 12 19
( 5727 1ryb_A) ( 6240 1vho_A) 0.3333 0.2105 6.2276 ( 0 2 6) 0 0.8956 0.5767 12 19
( 5727 1ryb_A) ( 6248 1vhw_A) 0.8928 0.6427 4.3175 ( 2 32 55) 0 0.8928 0.6427 12 17
( 5727 1ryb_A) ( 6519 2pth ) 0.9999 0.9231 1.4842 ( 0 46 66) 0 0.9999 0.9231 12 13
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