------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 6225 1vgy_A) ( 318 1b8o_A) 0.2778 0.2778 7.1688 ( 0 2 10) 0 0.7759 0.7759 18 18 ( 6225 1vgy_A) ( 442 1bou_B) 0.2222 0.2000 5.0039 ( 0 3 6) 0 0.8315 0.7489 18 20 ( 6225 1vgy_A) ( 541 1c8b_A) 0.2778 0.2778 4.7208 ( 0 6 10) 0 0.5541 0.5541 18 18 ( 6225 1vgy_A) ( 551 1cb0_A) 0.2777 0.3124 9.1697 ( 0 5 10) 0 0.6491 0.7024 18 16 ( 6225 1vgy_A) ( 583 1cfz_A) 0.4979 0.8645 4.4103 ( 1 14 36) 0 0.4979 0.8645 18 10 ( 6225 1vgy_A) ( 584 1cg2_A) 0.9441 0.8945 3.2035 ( 1 91 136) 0 0.9441 0.8945 18 19 ( 6225 1vgy_A) ( 811 1de4_C) 0.7769 0.7769 5.2710 ( 0 57 91) 0 0.7769 0.7769 18 18 ( 6225 1vgy_A) ( 1577 1fno_A) 0.7766 0.8729 2.1861 ( 2 56 91) 0 0.7766 0.8729 18 16 ( 6225 1vgy_A) ( 1702 1g2o_A) 0.2778 0.3125 5.8047 ( 0 5 10) 0 0.7193 0.8072 18 16 ( 6225 1vgy_A) ( 2137 1h8l_A) 0.7771 0.7771 5.0629 ( 0 53 91) 0 0.7771 0.7771 18 18 ( 6225 1vgy_A) ( 2608 1iu8_A) 0.6110 0.7853 4.3705 ( 0 33 55) 0 0.6110 0.7853 18 14 ( 6225 1vgy_A) ( 2834 1je0_A) 0.2222 0.2500 3.2375 ( 0 1 6) 0 0.7215 0.8113 18 16 ( 6225 1vgy_A) ( 3019 1jqg_A) 0.7775 0.8745 4.0404 ( 0 57 91) 0 0.7775 0.8745 18 16 ( 6225 1vgy_A) ( 3080 1jwq_A) 0.5554 0.9074 5.1708 ( 0 27 45) 0 0.5554 0.9074 18 11 ( 6225 1vgy_A) ( 3097 1jys_A) 0.2555 0.2762 11.1260 ( 2 7 10) 0 0.7217 0.8115 18 16 ( 6225 1vgy_A) ( 3584 1lam ) 0.8324 0.6519 5.0168 ( 0 65 105) 0 0.8324 0.6519 18 23 ( 6225 1vgy_A) ( 3620 1lfw_A) 0.8217 0.9169 2.5123 ( 4 68 105) 0 0.8217 0.9169 18 16 ( 6225 1vgy_A) ( 3832 1m4l_A) 0.7775 0.8745 3.9899 ( 0 55 91) 0 0.7775 0.8745 18 16 ( 6225 1vgy_A) ( 4591 1obr ) 0.8137 0.7743 5.0353 ( 4 60 105) 0 0.8137 0.7743 18 19 ( 6225 1vgy_A) ( 4605 1odk_A) 0.2222 0.2353 3.2106 ( 0 1 6) 0 0.7214 0.7637 18 17 ( 6225 1vgy_A) ( 5179 1q1g_A) 0.2760 0.2760 10.3051 ( 1 7 10) 0 0.7216 0.7216 18 18 ( 6225 1vgy_A) ( 5416 1qq9_A) 0.7205 0.8625 4.1015 ( 2 48 78) 0 0.7205 0.8625 18 15 ( 6225 1vgy_A) ( 5543 1r3n_A) 0.8329 0.8329 4.2147 ( 0 73 105) 0 0.8329 0.8329 18 18 ( 6225 1vgy_A) ( 5701 1rtq_A) 0.7777 0.9330 3.2796 ( 0 59 91) 0 0.7777 0.9330 18 15 ( 6225 1vgy_A) ( 5724 1rxy_A) 0.2222 0.2222 3.7685 ( 0 1 6) 0 0.7214 0.7214 18 18 ( 6225 1vgy_A) ( 5727 1ryb_A) 0.2222 0.3333 8.3315 ( 0 0 6) 0 0.6110 0.9155 18 12 ( 6225 1vgy_A) ( 6225 1vgy_A) 1.0000 1.0000 0.0000 ( 0 116 153) 0 1.0000 1.0000 18 18 ( 6225 1vgy_A) ( 6233 1vhe_A) 0.9274 0.8816 3.9493 ( 5 91 136) 0 0.9274 0.8816 18 19 ( 6225 1vgy_A) ( 6240 1vho_A) 0.9761 0.9290 3.5912 ( 6 107 153) 0 0.9761 0.9290 18 19 ( 6225 1vgy_A) ( 6248 1vhw_A) 0.2222 0.2353 7.7556 ( 0 3 6) 0 0.7215 0.7637 18 17 ( 6225 1vgy_A) ( 6519 2pth ) 0.2222 0.3077 4.4823 ( 0 2 6) 0 0.6664 0.9219 18 13 -------------------------------------------------------------------------------------------------------------------------