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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:
HELIX min length: 5 STRAND min length: 3
shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100
anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12
Legend:
( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2
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( 6240 1vho_A) ( 318 1b8o_A) 0.3642 0.3834 9.1225 ( 2 16 21) 0 0.7357 0.7762 19 18
( 6240 1vho_A) ( 442 1bou_B) 0.2631 0.2500 6.7646 ( 0 5 10) 0 0.7364 0.6996 19 20
( 6240 1vho_A) ( 541 1c8b_A) 0.2632 0.2778 3.4675 ( 0 7 10) 0 0.5135 0.5389 19 18
( 6240 1vho_A) ( 551 1cb0_A) 0.2105 0.2500 3.8648 ( 0 4 6) 0 0.5945 0.6870 19 16
( 6240 1vho_A) ( 583 1cfz_A) 0.4732 0.8888 3.2403 ( 1 19 36) 0 0.4736 0.8974 19 10
( 6240 1vho_A) ( 584 1cg2_A) 0.8878 0.8878 5.4487 ( 4 92 136) 0 0.9232 0.9232 19 19
( 6240 1vho_A) ( 811 1de4_C) 0.7352 0.7756 5.8420 ( 2 60 91) 0 0.7352 0.7756 19 18
( 6240 1vho_A) ( 1577 1fno_A) 0.7329 0.8659 2.9457 ( 3 58 91) 0 0.7366 0.8744 19 16
( 6240 1vho_A) ( 1702 1g2o_A) 0.3157 0.3748 9.0207 ( 0 12 15) 0 0.6830 0.8096 19 16
( 6240 1vho_A) ( 2137 1h8l_A) 0.6839 0.7219 4.3985 ( 1 50 78) 0 0.6839 0.7219 19 18
( 6240 1vho_A) ( 2608 1iu8_A) 0.5788 0.7849 4.1896 ( 1 35 55) 0 0.5788 0.7849 19 14
( 6240 1vho_A) ( 2834 1je0_A) 0.2632 0.3125 4.5251 ( 0 4 10) 0 0.6840 0.8121 19 16
( 6240 1vho_A) ( 3019 1jqg_A) 0.7361 0.8732 3.8764 ( 2 62 91) 0 0.7361 0.8732 19 16
( 6240 1vho_A) ( 3080 1jwq_A) 0.5263 0.9086 3.8164 ( 0 28 45) 0 0.5263 0.9086 19 11
( 6240 1vho_A) ( 3097 1jys_A) 0.2631 0.3124 9.9174 ( 0 8 10) 0 0.6840 0.8119 19 16
( 6240 1vho_A) ( 3584 1lam ) 0.7878 0.6515 5.5442 ( 2 69 105) 0 0.7878 0.6515 19 23
( 6240 1vho_A) ( 3620 1lfw_A) 0.7803 0.9164 3.8593 ( 4 68 105) 0 0.7803 0.9164 19 16
( 6240 1vho_A) ( 3832 1m4l_A) 0.7359 0.8729 3.8888 ( 2 59 91) 0 0.7359 0.8729 19 16
( 6240 1vho_A) ( 4591 1obr ) 0.7360 0.7360 3.7914 ( 2 59 91) 0 0.7360 0.7360 19 19
( 6240 1vho_A) ( 4605 1odk_A) 0.3157 0.3528 9.5713 ( 0 12 15) 0 0.6840 0.7644 19 17
( 6240 1vho_A) ( 5179 1q1g_A) 0.3157 0.3332 9.5505 ( 0 12 15) 0 0.6840 0.7219 19 18
( 6240 1vho_A) ( 5416 1qq9_A) 0.6831 0.8629 4.9167 ( 2 52 78) 0 0.6831 0.8629 19 15
( 6240 1vho_A) ( 5543 1r3n_A) 0.7367 0.7776 3.2035 ( 1 66 91) 0 0.7367 0.7776 19 18
( 6240 1vho_A) ( 5701 1rtq_A) 0.7361 0.9309 4.2561 ( 2 65 91) 0 0.7361 0.9309 19 15
( 6240 1vho_A) ( 5724 1rxy_A) 0.2632 0.2778 5.5012 ( 0 4 10) 0 0.6839 0.7219 19 18
( 6240 1vho_A) ( 5727 1ryb_A) 0.2105 0.3333 6.2276 ( 0 2 6) 0 0.5767 0.8956 19 12
( 6240 1vho_A) ( 6225 1vgy_A) 0.9290 0.9761 3.5912 ( 6 107 153) 0 0.9290 0.9761 19 18
( 6240 1vho_A) ( 6233 1vhe_A) 0.9305 0.9305 2.3256 ( 6 109 153) 0 0.9305 0.9305 19 19
( 6240 1vho_A) ( 6240 1vho_A) 1.0000 1.0000 0.0000 ( 0 136 171) 0 1.0000 1.0000 19 19
( 6240 1vho_A) ( 6248 1vhw_A) 0.3157 0.3527 9.8719 ( 0 12 15) 0 0.6840 0.7643 19 17
( 6240 1vho_A) ( 6519 2pth ) 0.2623 0.3792 10.8189 ( 1 8 10) 0 0.6297 0.9108 19 13
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