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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 1820 1gg4_A)  ( 1077 1e8c_A)     0.9008   0.8280   3.7437 (   1   21   45)   0     0.9008   0.8280   11  12
( 1820 1gg4_A)  ( 1820 1gg4_A)     1.0000   1.0000   0.0000 (   0   34   55)   0     1.0000   1.0000   11  11
( 1820 1gg4_A)  ( 2749 1j6u_A)     0.9952   0.9952   3.7922 (   1   28   55)   0     0.9952   0.9952   11  11
( 1820 1gg4_A)  ( 2818 1jbw_A)     0.8112   0.9814   3.1360 (   1   19   36)   0     0.8112   0.9814   11   9
( 1820 1gg4_A)  ( 4505 1o5z_A)     0.9055   0.9942   3.2431 (   1   26   45)   0     0.9055   0.9942   11  10
( 1820 1gg4_A)  ( 4880 1p3d_A)     0.9501   0.8832   2.9543 (   2   29   55)   0     0.9501   0.8832   11  12
( 1820 1gg4_A)  ( 6554 2uag_A)     0.9271   0.9271   3.8039 (   2   26   55)   0     0.9271   0.9271   11  11

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