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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 2818 1jbw_A)  ( 1077 1e8c_A)     0.9997   0.7499   2.9720 (   0   14   36)   0     0.9997   0.7499    9  12
( 2818 1jbw_A)  ( 1820 1gg4_A)     0.9814   0.8112   3.1360 (   1   19   36)   0     0.9814   0.8112    9  11
( 2818 1jbw_A)  ( 2749 1j6u_A)     0.9986   0.8177   4.3494 (   0   15   36)   0     0.9986   0.8177    9  11
( 2818 1jbw_A)  ( 2818 1jbw_A)     1.0000   1.0000   0.0000 (   0   21   36)   0     1.0000   1.0000    9   9
( 2818 1jbw_A)  ( 4505 1o5z_A)     0.9848   0.8909   2.5684 (   1   20   36)   0     0.9848   0.8909    9  10
( 2818 1jbw_A)  ( 4880 1p3d_A)     0.9718   0.7430   3.1431 (   1   17   36)   0     0.9718   0.7430    9  12
( 2818 1jbw_A)  ( 6554 2uag_A)     0.8886   0.7272   3.2779 (   0    7   28)   0     0.8886   0.7652    9  11

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