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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 4505 1o5z_A)  ( 1077 1e8c_A)     0.9997   0.8332   2.9059 (   0   21   45)   0     0.9997   0.8332   10  12
( 4505 1o5z_A)  ( 1820 1gg4_A)     0.9942   0.9055   3.2431 (   1   26   45)   0     0.9942   0.9055   10  11
( 4505 1o5z_A)  ( 2749 1j6u_A)     0.8778   0.8260   3.1783 (   2   22   45)   0     0.8997   0.8260   10  11
( 4505 1o5z_A)  ( 2818 1jbw_A)     0.8909   0.9848   2.5684 (   1   20   36)   0     0.8909   0.9848   10   9
( 4505 1o5z_A)  ( 4505 1o5z_A)     1.0000   1.0000   0.0000 (   0   28   45)   0     1.0000   1.0000   10  10
( 4505 1o5z_A)  ( 4880 1p3d_A)     0.9062   0.7908   2.7595 (   2   24   45)   0     0.9062   0.7908   10  12
( 4505 1o5z_A)  ( 6554 2uag_A)     0.9773   0.8947   2.8202 (   1   18   45)   0     0.9773   0.8947   10  11

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