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Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity.
Some relevant parameters:  
        HELIX min length: 5     STRAND min length: 3
        shift-tolerance = -10    permissible-violations = 4   max-breaks = NIL   retain-m = 100   best-n = 100
        anglethresh = 0.5    septhresh = 5   min_length = 4   rmsd-tol = 9.9999999999999E12

Legend:
( ix1 chain1 )  ( ix2 chain2 )   rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK   maxrho12 maxrho21  SS1 SS2

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( 3517 1l1q_A)  (   31 1a3c  )     0.4286   0.5000   3.6612 (   0   10   15)   0     0.7769   0.8981   14  12
( 3517 1l1q_A)  (  497 1bzy_A)     0.3571   0.3333   5.4970 (   0    2   10)   0     0.4999   0.4666   14  15
( 3517 1l1q_A)  (  863 1dkr_A)     0.6427   0.7498   4.0321 (   0   18   36)   0     0.6427   0.7498   14  12
( 3517 1l1q_A)  (  864 1dkr_A)     0.6427   0.8178   4.1366 (   0   20   36)   0     0.6427   0.8178   14  11
( 3517 1l1q_A)  (  920 1dqn_A)     0.5000   0.4118   4.1684 (   0   10   21)   0     0.7113   0.5871   14  17
( 3517 1l1q_A)  ( 1101 1ecf_A)     0.7141   0.7141   4.2456 (   0   25   45)   0     0.7845   0.7845   14  14
( 3517 1l1q_A)  ( 1619 1fsg_A)     0.4999   0.4999   4.8385 (   0    9   21)   0     0.5642   0.5642   14  14
( 3517 1l1q_A)  ( 1703 1g2q_A)     0.9148   0.9148   1.9843 (   3   56   78)   0     0.9148   0.9148   14  14
( 3517 1l1q_A)  ( 2209 1hgx_A)     0.3571   0.4545   4.9885 (   0    4   10)   0     0.6419   0.8151   14  11
( 3517 1l1q_A)  ( 2755 1j7j_A)     0.4285   0.5998   4.9571 (   0    3   15)   0     0.6417   0.8938   14  10
( 3517 1l1q_A)  ( 2960 1jlr_A)     0.7855   0.6470   3.7486 (   0   33   55)   0     0.7855   0.6470   14  17
( 3517 1l1q_A)  ( 3517 1l1q_A)     1.0000   1.0000   0.0000 (   0   66   91)   0     1.0000   1.0000   14  14
( 3517 1l1q_A)  ( 3628 1lh0_A)     0.8745   0.8270   5.5847 (   4   52   78)   0     0.8745   0.8270   14  15
( 3517 1l1q_A)  ( 4398 1nul_A)     0.5000   0.5833   3.3092 (   0   14   21)   0     0.7787   0.9017   14  12
( 3517 1l1q_A)  ( 4494 1o57_A)     0.7849   0.9150   3.3125 (   1   33   55)   0     0.7851   0.9153   14  12
( 3517 1l1q_A)  ( 4502 1o5o_A)     0.6420   0.5994   3.5661 (   1   24   36)   0     0.7847   0.7326   14  15
( 3517 1l1q_A)  ( 5277 1qb7_A)     0.8569   0.7499   3.5154 (   0   41   66)   0     0.8569   0.7499   14  16
( 3517 1l1q_A)  ( 5892 1tc1_A)     0.3571   0.4166   6.8495 (   0    4   10)   0     0.7006   0.7636   14  12

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