------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 1708 1g38_A) ( 115 1af7 ) 0.3571 0.5882 3.8738 ( 0 22 45) 0 0.3588 0.5882 28 17 ( 1708 1g38_A) ( 439 1boo_A) 0.1786 0.2778 3.0743 ( 0 3 10) 0 0.4286 0.6666 28 18 ( 1708 1g38_A) ( 800 1dct_A) 0.2838 0.3899 6.1952 ( 2 14 28) 0 0.4282 0.5980 28 20 ( 1708 1g38_A) ( 869 1dl5_A) 0.1786 0.3125 3.7442 ( 0 5 10) 0 0.3571 0.6250 28 16 ( 1708 1g38_A) ( 943 1dus_A) 0.3929 0.7856 2.9832 ( 0 22 55) 0 0.3929 0.7856 28 14 ( 1708 1g38_A) ( 1179 1ej0_A) 0.3929 0.9165 2.9266 ( 0 21 55) 0 0.3929 0.9165 28 12 ( 1708 1g38_A) ( 1384 1f3l_A) 0.4189 0.4635 7.8550 ( 4 31 66) 0 0.4189 0.4635 28 25 ( 1708 1g38_A) ( 1596 1fp1_D) 0.3571 0.6247 5.1329 ( 0 24 45) 0 0.3571 0.6247 28 16 ( 1708 1g38_A) ( 1598 1fp2_A) 0.3928 0.5498 3.1134 ( 1 29 55) 0 0.3928 0.5498 28 20 ( 1708 1g38_A) ( 1708 1g38_A) 1.0000 1.0000 0.0000 ( 0 318 378) 0 1.0000 1.0000 28 28 ( 1708 1g38_A) ( 1727 1g55_A) 0.2143 0.2999 9.0877 ( 0 6 15) 0 0.3571 0.5000 28 20 ( 1708 1g38_A) ( 1737 1g60_A) 0.2143 0.4286 4.1647 ( 0 6 15) 0 0.3929 0.7856 28 14 ( 1708 1g38_A) ( 1761 1g8a_A) 0.3928 0.6104 3.3041 ( 1 24 55) 0 0.3928 0.6108 28 18 ( 1708 1g38_A) ( 2037 1h1d_A) 0.3922 0.6764 3.1130 ( 2 27 55) 0 0.3922 0.6764 28 16 ( 1708 1g38_A) ( 2249 1hnn_A) 0.3571 0.5555 3.4948 ( 0 17 45) 0 0.4285 0.6660 28 18 ( 1708 1g38_A) ( 2364 1i1n_A) 0.2143 0.3750 3.3610 ( 0 8 15) 0 0.3571 0.6250 28 16 ( 1708 1g38_A) ( 2390 1i4w_A) 0.3929 0.5000 3.0267 ( 0 26 55) 0 0.3929 0.5000 28 22 ( 1708 1g38_A) ( 2435 1i9g_A) 0.3928 0.4998 3.2398 ( 1 24 55) 0 0.3928 0.4998 28 22 ( 1708 1g38_A) ( 2533 1im8_A) 0.3929 0.6875 2.7671 ( 0 21 55) 0 0.3929 0.6875 28 16 ( 1708 1g38_A) ( 2545 1inl_A) 0.3928 0.4782 3.9647 ( 0 24 55) 0 0.3928 0.4782 28 23 ( 1708 1g38_A) ( 2649 1ixk_A) 0.3929 0.4583 3.6670 ( 0 24 55) 0 0.4974 0.5777 28 24 ( 1708 1g38_A) ( 2858 1jg1_A) 0.1786 0.3571 3.7330 ( 0 5 10) 0 0.3571 0.7142 28 14 ( 1708 1g38_A) ( 3018 1jqe_A) 0.3928 0.4997 3.7524 ( 1 24 55) 0 0.4280 0.5436 28 22 ( 1708 1g38_A) ( 3051 1jsx_A) 0.3928 0.7321 4.0732 ( 1 27 55) 0 0.3928 0.7321 28 15 ( 1708 1g38_A) ( 3391 1kpg_A) 0.3929 0.5789 3.1914 ( 0 22 55) 0 0.4261 0.6154 28 19 ( 1708 1g38_A) ( 3524 1l3i_A) 0.1786 0.3571 4.6256 ( 0 2 10) 0 0.3928 0.7854 28 14 ( 1708 1g38_A) ( 3577 1l9k_A) 0.3929 0.6110 3.7437 ( 0 22 55) 0 0.4156 0.6110 28 18 ( 1708 1g38_A) ( 3858 1m6e_X) 0.3928 0.6110 4.4497 ( 0 27 55) 0 0.4201 0.6110 28 18 ( 1708 1g38_A) ( 3865 1m6y_A) 0.3928 0.6863 4.3242 ( 1 25 55) 0 0.4249 0.6991 28 16 ( 1708 1g38_A) ( 3944 1mjf_A) 0.4281 0.4989 4.5765 ( 2 33 66) 0 0.4281 0.4989 28 24 ( 1708 1g38_A) ( 4204 1ne2_A) 0.3929 0.7855 3.7099 ( 0 25 55) 0 0.4282 0.8443 28 14 ( 1708 1g38_A) ( 4296 1nkv_A) 0.3928 0.6465 3.8542 ( 1 28 55) 0 0.3928 0.6465 28 17 ( 1708 1g38_A) ( 4384 1nt2_A) 0.3928 0.6105 3.2347 ( 1 25 55) 0 0.3928 0.6105 28 18 ( 1708 1g38_A) ( 4401 1nv8_A) 0.3928 0.5786 3.4914 ( 1 27 55) 0 0.3928 0.5786 28 19 ( 1708 1g38_A) ( 4412 1nw3_A) 0.3571 0.4762 3.2417 ( 0 22 45) 0 0.3571 0.4762 28 21 ( 1708 1g38_A) ( 4413 1nw6_A) 0.2500 0.3684 6.2020 ( 0 10 21) 0 0.4640 0.6821 28 19 ( 1708 1g38_A) ( 4492 1o54_A) 0.3928 0.5496 3.1412 ( 1 24 55) 0 0.3928 0.5496 28 20 ( 1708 1g38_A) ( 4567 1o9g_A) 0.3571 0.6666 3.1630 ( 0 23 45) 0 0.3571 0.6666 28 15 ( 1708 1g38_A) ( 4860 1p1c_A) 0.3928 0.6865 3.8011 ( 1 26 55) 0 0.3928 0.6865 28 16 ( 1708 1g38_A) ( 4936 1p91_A) 0.3571 0.5554 5.3631 ( 0 22 45) 0 0.3802 0.5554 28 18 ( 1708 1g38_A) ( 5033 1pjz_A) 0.3926 0.6829 3.1652 ( 1 17 55) 0 0.3926 0.6829 28 16 ( 1708 1g38_A) ( 5169 1q0s_A) 0.3919 0.6359 3.5499 ( 2 25 55) 0 0.3919 0.6359 28 17 ( 1708 1g38_A) ( 5266 1qam_A) 0.3929 0.6875 2.8194 ( 0 25 55) 0 0.3929 0.6875 28 16 ( 1708 1g38_A) ( 5509 1qzz_A) 0.3571 0.5263 2.5918 ( 0 24 45) 0 0.3571 0.5263 28 19 ( 1708 1g38_A) ( 5639 1ri5_A) 0.3929 0.5500 3.0646 ( 0 23 55) 0 0.3929 0.5500 28 20 ( 1708 1g38_A) ( 5650 1rjd_A) 0.3927 0.4995 3.6539 ( 1 20 55) 0 0.3927 0.4995 28 22 ( 1708 1g38_A) ( 6005 1ufk_A) 0.3929 0.4583 2.7112 ( 0 23 55) 0 0.4066 0.4583 28 24 ( 1708 1g38_A) ( 6027 1uir_A) 0.4202 0.4656 4.0264 ( 4 32 66) 0 0.4284 0.4798 28 25 ( 1708 1g38_A) ( 6132 1uwv_A) 0.2143 0.2222 4.9610 ( 0 4 15) 0 0.4640 0.4811 28 27 ( 1708 1g38_A) ( 6164 1v39 ) 0.3571 0.5555 3.5038 ( 0 20 45) 0 0.3928 0.6109 28 18 ( 1708 1g38_A) ( 6352 1xva_A) 0.3929 0.5789 3.1800 ( 0 24 55) 0 0.3929 0.5789 28 19 ( 1708 1g38_A) ( 6430 2dpm_A) 0.3928 0.6458 3.1231 ( 1 22 55) 0 0.3928 0.6458 28 17 ( 1708 1g38_A) ( 6629 6mht_A) 0.1786 0.2500 4.3963 ( 0 3 10) 0 0.3571 0.5000 28 20 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