------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 2858 1jg1_A) ( 115 1af7 ) 0.4286 0.3529 4.1071 ( 0 7 15) 0 0.8560 0.7054 14 17 ( 2858 1jg1_A) ( 439 1boo_A) 0.3571 0.2778 5.4074 ( 0 2 10) 0 0.7854 0.6110 14 18 ( 2858 1jg1_A) ( 800 1dct_A) 0.3571 0.2500 4.5020 ( 0 2 10) 0 0.8567 0.5999 14 20 ( 2858 1jg1_A) ( 869 1dl5_A) 0.9972 0.8736 2.0587 ( 2 62 91) 0 0.9972 0.8736 14 16 ( 2858 1jg1_A) ( 943 1dus_A) 0.7142 0.7142 3.4582 ( 0 21 45) 0 0.7856 0.7856 14 14 ( 2858 1jg1_A) ( 1179 1ej0_A) 0.3571 0.4166 6.1529 ( 0 4 10) 0 0.7836 0.9121 14 12 ( 2858 1jg1_A) ( 1384 1f3l_A) 0.8518 0.4797 7.4512 ( 0 29 66) 0 0.8529 0.4798 14 25 ( 2858 1jg1_A) ( 1596 1fp1_D) 0.7136 0.6247 5.5575 ( 0 22 45) 0 0.7846 0.6869 14 16 ( 2858 1jg1_A) ( 1598 1fp2_A) 0.6424 0.4499 5.7808 ( 0 19 36) 0 0.8558 0.5998 14 20 ( 2858 1jg1_A) ( 1708 1g38_A) 0.3571 0.1786 3.7330 ( 0 5 10) 0 0.7142 0.3571 14 28 ( 2858 1jg1_A) ( 1727 1g55_A) 0.3571 0.2500 4.3398 ( 0 3 10) 0 0.7854 0.5500 14 20 ( 2858 1jg1_A) ( 1737 1g60_A) 0.3571 0.3571 4.5376 ( 0 4 10) 0 0.7856 0.7856 14 14 ( 2858 1jg1_A) ( 1761 1g8a_A) 0.4281 0.3332 9.5788 ( 0 9 15) 0 0.7846 0.6108 14 18 ( 2858 1jg1_A) ( 2037 1h1d_A) 0.4283 0.3748 8.5679 ( 0 7 15) 0 0.8560 0.7494 14 16 ( 2858 1jg1_A) ( 2249 1hnn_A) 0.4286 0.3333 4.1420 ( 0 10 15) 0 0.7141 0.5555 14 18 ( 2858 1jg1_A) ( 2364 1i1n_A) 0.9286 0.8125 1.4341 ( 0 52 78) 0 0.9286 0.8125 14 16 ( 2858 1jg1_A) ( 2390 1i4w_A) 0.4963 0.3178 3.4819 ( 1 12 21) 0 0.7846 0.4999 14 22 ( 2858 1jg1_A) ( 2435 1i9g_A) 0.7142 0.4545 2.8947 ( 0 24 45) 0 0.8566 0.5454 14 22 ( 2858 1jg1_A) ( 2533 1im8_A) 0.4284 0.3749 7.3966 ( 0 7 15) 0 0.8564 0.7496 14 16 ( 2858 1jg1_A) ( 2545 1inl_A) 0.5000 0.3043 3.7895 ( 0 8 21) 0 0.9189 0.5644 14 23 ( 2858 1jg1_A) ( 2649 1ixk_A) 0.3571 0.2083 5.5928 ( 0 2 10) 0 0.7852 0.4583 14 24 ( 2858 1jg1_A) ( 2858 1jg1_A) 1.0000 1.0000 0.0000 ( 0 66 91) 0 1.0000 1.0000 14 14 ( 2858 1jg1_A) ( 3018 1jqe_A) 0.6277 0.4074 5.5383 ( 2 23 36) 0 0.8555 0.5453 14 22 ( 2858 1jg1_A) ( 3051 1jsx_A) 0.4285 0.3999 6.3567 ( 0 7 15) 0 0.9270 0.8655 14 15 ( 2858 1jg1_A) ( 3391 1kpg_A) 0.3571 0.2631 6.7245 ( 0 3 10) 0 0.8560 0.6313 14 19 ( 2858 1jg1_A) ( 3524 1l3i_A) 0.7137 0.7137 5.3587 ( 0 25 45) 0 0.7849 0.7849 14 14 ( 2858 1jg1_A) ( 3577 1l9k_A) 0.3571 0.2778 6.5824 ( 0 1 10) 0 0.4999 0.4005 14 18 ( 2858 1jg1_A) ( 3858 1m6e_X) 0.4285 0.3333 4.4410 ( 0 7 15) 0 0.7853 0.6110 14 18 ( 2858 1jg1_A) ( 3865 1m6y_A) 0.3571 0.3125 2.7313 ( 0 3 10) 0 0.7854 0.6873 14 16 ( 2858 1jg1_A) ( 3944 1mjf_A) 0.4286 0.2500 4.1692 ( 0 7 15) 0 0.8561 0.4999 14 24 ( 2858 1jg1_A) ( 4204 1ne2_A) 0.5000 0.5000 3.8133 ( 0 13 21) 0 0.8566 0.8566 14 14 ( 2858 1jg1_A) ( 4296 1nkv_A) 0.4285 0.3529 5.3942 ( 0 8 15) 0 0.7855 0.6470 14 17 ( 2858 1jg1_A) ( 4384 1nt2_A) 0.3571 0.2778 4.4108 ( 0 4 10) 0 0.7842 0.6107 14 18 ( 2858 1jg1_A) ( 4401 1nv8_A) 0.4285 0.3158 5.7002 ( 0 4 15) 0 0.7855 0.5789 14 19 ( 2858 1jg1_A) ( 4412 1nw3_A) 0.4999 0.3333 4.7436 ( 0 12 21) 0 0.9257 0.6187 14 21 ( 2858 1jg1_A) ( 4413 1nw6_A) 0.4286 0.3158 3.4278 ( 0 10 15) 0 0.7855 0.5789 14 19 ( 2858 1jg1_A) ( 4492 1o54_A) 0.7143 0.5000 2.2994 ( 0 24 45) 0 0.7857 0.5500 14 20 ( 2858 1jg1_A) ( 4567 1o9g_A) 0.4285 0.4000 5.6555 ( 0 4 15) 0 0.7855 0.7332 14 15 ( 2858 1jg1_A) ( 4860 1p1c_A) 0.4285 0.3750 6.0923 ( 0 4 15) 0 0.7855 0.6874 14 16 ( 2858 1jg1_A) ( 4936 1p91_A) 0.5712 0.4444 5.3873 ( 0 19 28) 0 0.8555 0.6662 14 18 ( 2858 1jg1_A) ( 5033 1pjz_A) 0.4285 0.3750 4.5845 ( 0 5 15) 0 0.7816 0.6854 14 16 ( 2858 1jg1_A) ( 5169 1q0s_A) 0.3370 0.2859 8.1491 ( 1 5 10) 0 0.8628 0.7373 14 17 ( 2858 1jg1_A) ( 5266 1qam_A) 0.7142 0.6250 3.4237 ( 0 25 45) 0 0.7856 0.6874 14 16 ( 2858 1jg1_A) ( 5509 1qzz_A) 0.4285 0.3158 4.8669 ( 0 6 15) 0 0.8483 0.6296 14 19 ( 2858 1jg1_A) ( 5639 1ri5_A) 0.4285 0.3000 4.6308 ( 0 7 15) 0 0.8567 0.5999 14 20 ( 2858 1jg1_A) ( 5650 1rjd_A) 0.5000 0.3182 4.0650 ( 0 12 21) 0 0.9504 0.6306 14 22 ( 2858 1jg1_A) ( 6005 1ufk_A) 0.4286 0.2500 3.6685 ( 0 5 15) 0 0.8570 0.5000 14 24 ( 2858 1jg1_A) ( 6027 1uir_A) 0.4201 0.2395 6.0019 ( 1 8 15) 0 0.8554 0.4799 14 25 ( 2858 1jg1_A) ( 6132 1uwv_A) 0.7143 0.3704 2.1618 ( 0 23 45) 0 0.7857 0.4074 14 27 ( 2858 1jg1_A) ( 6164 1v39 ) 0.4282 0.3332 8.9591 ( 0 5 15) 0 0.7009 0.5516 14 18 ( 2858 1jg1_A) ( 6352 1xva_A) 0.4147 0.3126 3.0799 ( 1 7 15) 0 0.8555 0.6312 14 19 ( 2858 1jg1_A) ( 6430 2dpm_A) 0.3571 0.2941 4.0225 ( 0 5 10) 0 0.8128 0.6879 14 17 ( 2858 1jg1_A) ( 6629 6mht_A) 0.3571 0.2500 7.1534 ( 0 5 10) 0 0.8466 0.5982 14 20 -------------------------------------------------------------------------------------------------------------------------