------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 3524 1l3i_A) ( 115 1af7 ) 0.7836 0.6463 6.5549 ( 0 32 55) 0 0.7838 0.6463 14 17 ( 3524 1l3i_A) ( 439 1boo_A) 0.3571 0.2778 2.6981 ( 0 1 10) 0 0.9279 0.7220 14 18 ( 3524 1l3i_A) ( 800 1dct_A) 0.4285 0.3000 4.7180 ( 0 5 15) 0 0.8557 0.5998 14 20 ( 3524 1l3i_A) ( 869 1dl5_A) 0.3571 0.3125 5.1556 ( 0 2 10) 0 0.7848 0.6870 14 16 ( 3524 1l3i_A) ( 943 1dus_A) 0.8563 0.8563 4.6666 ( 0 35 66) 0 0.8563 0.8563 14 14 ( 3524 1l3i_A) ( 1179 1ej0_A) 0.8537 0.9925 6.6820 ( 0 25 66) 0 0.8537 0.9925 14 12 ( 3524 1l3i_A) ( 1384 1f3l_A) 0.7135 0.4000 5.8115 ( 0 17 45) 0 0.9166 0.5193 14 25 ( 3524 1l3i_A) ( 1596 1fp1_D) 0.8513 0.7470 7.6046 ( 0 39 66) 0 0.8513 0.7470 14 16 ( 3524 1l3i_A) ( 1598 1fp2_A) 0.8551 0.5997 5.8103 ( 0 39 66) 0 0.8933 0.6436 14 20 ( 3524 1l3i_A) ( 1708 1g38_A) 0.4286 0.2143 3.6524 ( 0 8 15) 0 0.7854 0.3928 14 28 ( 3524 1l3i_A) ( 1727 1g55_A) 0.5000 0.3500 3.6551 ( 0 10 21) 0 0.7843 0.5498 14 20 ( 3524 1l3i_A) ( 1737 1g60_A) 0.3571 0.3571 2.3443 ( 0 1 10) 0 0.9270 0.9270 14 14 ( 3524 1l3i_A) ( 1761 1g8a_A) 0.8555 0.6662 5.5027 ( 0 36 66) 0 0.8555 0.6662 14 18 ( 3524 1l3i_A) ( 2037 1h1d_A) 0.9180 0.8070 4.5760 ( 2 41 78) 0 0.9180 0.8070 14 16 ( 3524 1l3i_A) ( 2249 1hnn_A) 0.7852 0.6110 4.6920 ( 0 30 55) 0 0.7852 0.6110 14 18 ( 3524 1l3i_A) ( 2364 1i1n_A) 0.7143 0.6250 2.4074 ( 0 22 45) 0 0.7849 0.6871 14 16 ( 3524 1l3i_A) ( 2390 1i4w_A) 0.9257 0.5906 5.3854 ( 1 40 78) 0 0.9261 0.5906 14 22 ( 3524 1l3i_A) ( 2435 1i9g_A) 0.9222 0.5902 5.2677 ( 2 50 78) 0 0.9222 0.5902 14 22 ( 3524 1l3i_A) ( 2533 1im8_A) 0.8564 0.7496 4.5985 ( 0 34 66) 0 0.8564 0.7496 14 16 ( 3524 1l3i_A) ( 2545 1inl_A) 0.9272 0.5651 4.7534 ( 0 42 78) 0 0.9272 0.5651 14 23 ( 3524 1l3i_A) ( 2649 1ixk_A) 0.9270 0.5416 4.9448 ( 0 37 78) 0 0.9270 0.5416 14 24 ( 3524 1l3i_A) ( 2858 1jg1_A) 0.7137 0.7137 5.3587 ( 0 25 45) 0 0.7849 0.7849 14 14 ( 3524 1l3i_A) ( 3018 1jqe_A) 0.9977 0.6361 4.9463 ( 0 53 91) 0 0.9977 0.6361 14 22 ( 3524 1l3i_A) ( 3051 1jsx_A) 0.8547 0.7983 6.1169 ( 0 37 66) 0 0.8547 0.7983 14 15 ( 3524 1l3i_A) ( 3391 1kpg_A) 0.8549 0.6311 5.9935 ( 0 32 66) 0 0.8549 0.6311 14 19 ( 3524 1l3i_A) ( 3524 1l3i_A) 1.0000 1.0000 0.0000 ( 0 61 91) 0 1.0000 1.0000 14 14 ( 3524 1l3i_A) ( 3577 1l9k_A) 0.7834 0.6104 6.7221 ( 0 23 55) 0 0.7834 0.6104 14 18 ( 3524 1l3i_A) ( 3858 1m6e_X) 0.8558 0.6663 5.2985 ( 0 37 66) 0 0.8558 0.6663 14 18 ( 3524 1l3i_A) ( 3865 1m6y_A) 0.8569 0.7499 3.2739 ( 0 29 66) 0 0.8569 0.7499 14 16 ( 3524 1l3i_A) ( 3944 1mjf_A) 0.9266 0.5415 5.2565 ( 0 41 78) 0 0.9266 0.5415 14 24 ( 3524 1l3i_A) ( 4204 1ne2_A) 0.8569 0.8569 3.5237 ( 0 37 66) 0 0.8569 0.8569 14 14 ( 3524 1l3i_A) ( 4296 1nkv_A) 0.8559 0.7054 5.2021 ( 0 36 66) 0 0.8559 0.7054 14 17 ( 3524 1l3i_A) ( 4384 1nt2_A) 0.9252 0.7213 5.7170 ( 1 41 78) 0 0.9252 0.7213 14 18 ( 3524 1l3i_A) ( 4401 1nv8_A) 0.9261 0.6837 5.5363 ( 0 39 78) 0 0.9261 0.6837 14 19 ( 3524 1l3i_A) ( 4412 1nw3_A) 0.8406 0.5692 6.6606 ( 2 34 66) 0 0.8428 0.5695 14 21 ( 3524 1l3i_A) ( 4413 1nw6_A) 0.4286 0.3158 3.3442 ( 0 10 15) 0 0.9280 0.6841 14 19 ( 3524 1l3i_A) ( 4492 1o54_A) 0.8554 0.5997 5.5990 ( 0 38 66) 0 0.8554 0.6040 14 20 ( 3524 1l3i_A) ( 4567 1o9g_A) 0.8561 0.7993 4.9167 ( 0 31 66) 0 0.9250 0.8642 14 15 ( 3524 1l3i_A) ( 4860 1p1c_A) 0.9276 0.8120 4.3976 ( 0 42 78) 0 0.9276 0.8120 14 16 ( 3524 1l3i_A) ( 4936 1p91_A) 0.7853 0.6110 4.3195 ( 0 32 55) 0 0.7853 0.6110 14 18 ( 3524 1l3i_A) ( 5033 1pjz_A) 0.8538 0.7483 5.9116 ( 1 31 66) 0 0.9217 0.8090 14 16 ( 3524 1l3i_A) ( 5169 1q0s_A) 0.8545 0.7049 5.8683 ( 1 37 66) 0 0.8545 0.7049 14 17 ( 3524 1l3i_A) ( 5266 1qam_A) 0.8546 0.7487 6.1532 ( 0 35 66) 0 0.9206 0.8084 14 16 ( 3524 1l3i_A) ( 5509 1qzz_A) 0.8558 0.6313 5.2992 ( 0 37 66) 0 0.8558 0.6313 14 19 ( 3524 1l3i_A) ( 5639 1ri5_A) 0.8550 0.5996 5.9274 ( 0 37 66) 0 0.9001 0.6449 14 20 ( 3524 1l3i_A) ( 5650 1rjd_A) 0.9252 0.5906 5.9937 ( 0 40 78) 0 0.9252 0.5906 14 22 ( 3524 1l3i_A) ( 6005 1ufk_A) 0.9275 0.5416 4.4917 ( 0 39 78) 0 0.9275 0.5416 14 24 ( 3524 1l3i_A) ( 6027 1uir_A) 0.9275 0.5199 4.5313 ( 0 41 78) 0 0.9275 0.5391 14 25 ( 3524 1l3i_A) ( 6132 1uwv_A) 0.9193 0.4811 4.8219 ( 2 43 78) 0 0.9222 0.4812 14 27 ( 3524 1l3i_A) ( 6164 1v39 ) 0.7838 0.6106 6.4019 ( 0 25 55) 0 0.7843 0.6107 14 18 ( 3524 1l3i_A) ( 6352 1xva_A) 0.9247 0.6834 5.9013 ( 1 40 78) 0 0.9247 0.7172 14 19 ( 3524 1l3i_A) ( 6430 2dpm_A) 0.9159 0.7598 5.4575 ( 2 40 78) 0 0.9159 0.7598 14 17 ( 3524 1l3i_A) ( 6629 6mht_A) 0.5714 0.4000 3.0901 ( 0 10 28) 0 0.7130 0.5223 14 20 -------------------------------------------------------------------------------------------------------------------------