------------------------------------------------------------------------------------------------------------------------- Will print the top 5 alignments (based on backbone shifts) for each pairing of chains, as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: score1 [score2] pairings L2ERR {Xbad/Xsig:Xtot} Breaks (score2 is the score from protein2's perspective, not the minimum of the two perspectives as in some earlier printouts.) Recall that "SIMILARITY" refers to similarities over all alignments not just the top ones. ------------------------------------------------------------------------------------------------------------------------- [3865, 115]: Comparing 1m6y_A and 1af7, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 23 (12 H + 11 S) secondary structure elements in 1af7, of which 17 satisfy the size requirements. 1.45481 [ 1.54567] ((1 . 5) (2 . 6) (3 . 7) (4 . 8) (5 . 9) (6 . 16) (8 . 17) (16 . 19) (18 . 21) (20 . 22) (23 . 23)) 3.815 {0/30:55} B:0 1.60010 [ 1.70008] ((1 . 5) (2 . 6) (3 . 7) (4 . 8) (5 . 9) (6 . 16) (8 . 17) (16 . 19) (18 . 21) (23 . 23)) 3.196 {0/20:45} B:0 3.20037 [ 3.40031] ((3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 9)) 7.514 {0/4:10} B:0 3.20077 [ 3.40064] ((1 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 9)) 9.006 {0/6:10} B:0 4.00001 [ 4.25001] ((2 . 17) (3 . 19) (4 . 21) (6 . 22)) 3.537 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.6874 [and 1/min{score2}: 0.6470] [3865, 439]: Comparing 1m6y_A and 1boo_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 23 (10 H + 13 S) secondary structure elements in 1boo_A, of which 18 satisfy the size requirements. 2.66672 [ 3.00004] ((3 . 3) (4 . 4) (5 . 5) (6 . 7) (18 . 20) (19 . 21)) 4.044 {0/8:15} B:0 2.66676 [ 3.00006] ((1 . 3) (2 . 4) (3 . 5) (4 . 7) (16 . 19) (18 . 20)) 4.586 {0/2:15} B:0 2.66680 [ 3.00009] ((1 . 3) (2 . 4) (5 . 5) (6 . 7) (16 . 19) (18 . 20)) 5.080 {0/4:15} B:0 2.66681 [ 3.00010] ((4 . 4) (5 . 5) (6 . 7) (16 . 19) (18 . 20) (19 . 21)) 5.184 {0/8:15} B:0 2.66682 [ 3.00011] ((2 . 4) (5 . 5) (6 . 7) (16 . 19) (18 . 20) (19 . 21)) 5.229 {0/7:15} B:0 SIMILARITY (1/min{score1}): 0.8120 [and 1/min{score2}: 0.7220] [3865, 800]: Comparing 1m6y_A and 1dct_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 28 (17 H + 11 S) secondary structure elements in 1dct_A, of which 20 satisfy the size requirements. 2.66673 [ 3.33337] ((2 . 7) (3 . 8) (4 . 9) (5 . 11) (6 . 12) (19 . 27)) 4.228 {0/6:15} B:0 3.20004 [ 4.00002] ((1 . 4) (2 . 7) (5 . 8) (6 . 9) (19 . 26)) 4.306 {0/6:10} B:0 3.20012 [ 4.00006] ((1 . 8) (2 . 9) (3 . 11) (4 . 12) (16 . 28)) 5.641 {0/1:10} B:0 3.20015 [ 4.00008] ((2 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 7)) 6.021 {0/0:10} B:0 3.20018 [ 4.00009] ((4 . 1) (5 . 2) (6 . 3) (7 . 4) (8 . 5)) 6.268 {0/1:10} B:0 SIMILARITY (1/min{score1}): 0.7212 [and 1/min{score2}: 0.5937] [3865, 869]: Comparing 1m6y_A and 1dl5_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 33 (16 H + 17 S) secondary structure elements in 1dl5_A, of which 16 satisfy the size requirements. 1.60008 [ 1.60008] ((1 . 7) (2 . 8) (3 . 9) (4 . 10) (5 . 11) (6 . 12) (8 . 15) (16 . 16) (18 . 18) (23 . 20)) 3.080 {0/17:45} B:0 2.28573 [ 2.28573] ((1 . 7) (2 . 8) (3 . 9) (4 . 10) (5 . 11) (6 . 12) (8 . 18)) 2.528 {0/9:21} B:0 2.66669 [ 2.66669] ((1 . 7) (2 . 8) (3 . 9) (4 . 10) (7 . 16) (8 . 18)) 3.435 {0/5:15} B:0 3.20010 [ 3.20010] ((1 . 9) (2 . 10) (3 . 11) (4 . 12) (7 . 16)) 5.425 {0/2:10} B:0 3.20064 [ 3.20064] ((1 . 9) (2 . 10) (3 . 11) (4 . 15) (5 . 16)) 8.608 {0/1:10} B:0 SIMILARITY (1/min{score1}): 0.6873 [and 1/min{score2}: 0.6873] [3865, 943]: Comparing 1m6y_A and 1dus_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 15 (5 H + 10 S) secondary structure elements in 1dus_A, of which 14 satisfy the size requirements. 1.33377 [ 1.16732] ((1 . 3) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (8 . 9) (16 . 10) (18 . 12) (19 . 13) (20 . 14) (23 . 15)) 4.056 {0/32:66} B:0 1.45459 [ 1.27280] ((1 . 3) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (8 . 9) (16 . 10) (18 . 12) (19 . 13) (23 . 15)) 2.474 {0/23:55} B:0 3.20001 [ 2.80002] ((2 . 9) (3 . 10) (4 . 12) (5 . 13) (6 . 14)) 3.153 {0/1:10} B:0 3.20018 [ 2.80027] ((1 . 5) (2 . 6) (3 . 7) (4 . 8) (7 . 10)) 6.303 {0/3:10} B:0 3.20030 [ 2.80045] ((1 . 5) (3 . 7) (4 . 8) (7 . 10) (8 . 12)) 7.142 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.7498 [and 1/min{score2}: 0.8567] [3865, 1179]: Comparing 1m6y_A and 1ej0_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 13 (5 H + 8 S) secondary structure elements in 1ej0_A, of which 12 satisfy the size requirements. 1.33552 [ 1.00515] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (6 . 5) (7 . 6) (8 . 7) (16 . 8) (18 . 10) (19 . 11) (20 . 12) (23 . 13)) 3.353 {1/27:66} B:0 2.66682 [ 2.00036] ((1 . 1) (4 . 2) (5 . 3) (6 . 5) (7 . 6) (8 . 7)) 5.246 {0/6:15} B:0 2.66686 [ 2.00047] ((1 . 6) (2 . 7) (3 . 8) (4 . 10) (5 . 11) (6 . 12)) 5.599 {0/6:15} B:0 3.20002 [ 2.40004] ((4 . 2) (5 . 3) (6 . 4) (7 . 6) (8 . 7)) 3.504 {0/1:10} B:0 3.20005 [ 2.40013] ((3 . 1) (4 . 2) (5 . 3) (6 . 4) (8 . 7)) 4.634 {0/1:10} B:0 SIMILARITY (1/min{score1}): 0.7488 [and 1/min{score2}: 0.9949] [3865, 1384]: Comparing 1m6y_A and 1f3l_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 28 (11 H + 17 S) secondary structure elements in 1f3l_A, of which 25 satisfy the size requirements. 2.66693 [ 4.16674] ((1 . 2) (2 . 5) (4 . 7) (5 . 8) (6 . 9) (8 . 10)) 6.040 {0/8:15} B:0 3.20015 [ 5.00004] ((1 . 6) (2 . 7) (3 . 8) (4 . 9) (7 . 11)) 5.964 {0/5:10} B:0 3.20018 [ 5.00005] ((2 . 5) (3 . 6) (4 . 7) (5 . 8) (6 . 10)) 6.254 {0/1:10} B:0 3.20029 [ 5.00008] ((1 . 6) (2 . 7) (3 . 8) (4 . 10) (7 . 11)) 7.062 {0/5:10} B:0 3.20069 [ 5.00018] ((1 . 2) (4 . 5) (5 . 6) (6 . 7) (8 . 10)) 8.762 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.6294 [and 1/min{score2}: 0.4615] [3865, 1596]: Comparing 1m6y_A and 1fp1_D, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 28 (17 H + 11 S) secondary structure elements in 1fp1_D, of which 16 satisfy the size requirements. 2.01782 [ 2.01782] ((1 . 13) (2 . 14) (3 . 15) (4 . 16) (6 . 18) (7 . 21) (19 . 24) (20 . 27) (23 . 28)) 6.944 {4/25:36} B:0 3.20036 [ 3.20036] ((1 . 15) (2 . 16) (4 . 19) (5 . 21) (6 . 23)) 7.451 {0/4:10} B:0 3.20043 [ 3.20043] ((1 . 15) (2 . 16) (4 . 18) (6 . 19) (7 . 21)) 7.807 {0/5:10} B:0 3.20045 [ 3.20045] ((1 . 13) (2 . 14) (4 . 18) (6 . 19) (7 . 21)) 7.878 {0/6:10} B:0 3.20049 [ 3.20049] ((2 . 19) (3 . 21) (4 . 23) (7 . 26) (8 . 27)) 8.046 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.7493 [and 1/min{score2}: 0.7493] [3865, 1598]: Comparing 1m6y_A and 1fp2_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 33 (21 H + 12 S) secondary structure elements in 1fp2_A, of which 20 satisfy the size requirements. 2.66688 [ 3.33344] ((1 . 15) (2 . 18) (3 . 19) (4 . 20) (6 . 22) (8 . 23)) 5.726 {0/8:15} B:0 3.07715 [ 3.57063] ((1 . 17) (2 . 18) (3 . 19) (4 . 20) (6 . 23) (7 . 25)) 6.577 {2/8:15} B:0 3.20018 [ 4.00009] ((1 . 15) (4 . 18) (5 . 21) (6 . 22) (8 . 23)) 6.314 {0/6:10} B:0 3.20049 [ 4.00025] ((1 . 15) (4 . 18) (5 . 19) (6 . 20) (8 . 23)) 8.051 {0/6:10} B:0 4.00003 [ 5.00001] ((2 . 23) (4 . 27) (7 . 31) (8 . 32)) 4.541 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.7563 [and 1/min{score2}: 0.6296] [3865, 1708]: Comparing 1m6y_A and 1g38_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 38 (16 H + 22 S) secondary structure elements in 1g38_A, of which 28 satisfy the size requirements. 1.45705 [ 2.54592] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (6 . 5) (8 . 7) (16 . 9) (18 . 11) (19 . 13) (20 . 14) (23 . 15)) 4.324 {1/25:55} B:0 3.20006 [ 5.60001] ((3 . 1) (4 . 2) (5 . 3) (6 . 4) (7 . 9)) 4.843 {0/2:10} B:0 3.21267 [ 5.60238] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (23 . 27)) 18.190 {0/6:10} B:0 4.00000 [ 7.00000] ((1 . 1) (4 . 2) (6 . 5) (8 . 7)) 2.772 {0/4:6} B:0 4.00002 [ 7.00000] ((4 . 2) (5 . 3) (6 . 4) (8 . 7)) 3.985 {0/3:6} B:0 SIMILARITY (1/min{score1}): 0.6991 [and 1/min{score2}: 0.4249] [3865, 1727]: Comparing 1m6y_A and 1g55_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 27 (16 H + 11 S) secondary structure elements in 1g55_A, of which 20 satisfy the size requirements. 2.30674 [ 2.86799] ((1 . 7) (2 . 8) (3 . 9) (4 . 10) (5 . 12) (6 . 13) (19 . 26)) 5.865 {1/10:21} B:0 3.20009 [ 4.00005] ((2 . 1) (3 . 2) (4 . 3) (5 . 4) (7 . 9)) 5.345 {0/3:10} B:0 3.20011 [ 4.00006] ((1 . 9) (2 . 10) (3 . 12) (4 . 13) (16 . 27)) 5.596 {0/0:10} B:0 3.20032 [ 4.00016] ((2 . 1) (3 . 2) (4 . 3) (5 . 7) (7 . 9)) 7.229 {0/3:10} B:0 3.20043 [ 4.00022] ((2 . 8) (3 . 9) (4 . 10) (8 . 13) (19 . 26)) 7.810 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.8079 [and 1/min{score2}: 0.6485] [3865, 1737]: Comparing 1m6y_A and 1g60_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 18 (9 H + 9 S) secondary structure elements in 1g60_A, of which 14 satisfy the size requirements. 2.66679 [ 2.33352] ((4 . 3) (5 . 5) (6 . 7) (16 . 16) (18 . 17) (19 . 18)) 4.984 {0/7:15} B:0 2.66679 [ 2.33352] ((2 . 3) (5 . 5) (6 . 7) (16 . 16) (18 . 17) (19 . 18)) 5.020 {0/6:15} B:0 2.66681 [ 2.33355] ((3 . 2) (4 . 3) (5 . 5) (16 . 16) (18 . 17) (19 . 18)) 5.179 {0/6:15} B:0 2.66725 [ 2.33420] ((2 . 1) (4 . 3) (5 . 5) (16 . 16) (18 . 17) (19 . 18)) 7.326 {0/4:15} B:0 3.20002 [ 2.80003] ((2 . 3) (3 . 5) (4 . 7) (5 . 8) (6 . 9)) 3.729 {0/1:10} B:0 SIMILARITY (1/min{score1}): 0.8118 [and 1/min{score2}: 0.9272] [3865, 1761]: Comparing 1m6y_A and 1g8a_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 20 (7 H + 13 S) secondary structure elements in 1g8a_A, of which 18 satisfy the size requirements. 1.23154 [ 1.38516] ((1 . 6) (2 . 7) (3 . 8) (4 . 9) (5 . 10) (6 . 11) (7 . 12) (8 . 13) (16 . 14) (18 . 16) (19 . 18) (20 . 19) (23 . 20)) 3.849 {1/45:78} B:0 1.33360 [ 1.50018] ((2 . 7) (3 . 8) (4 . 9) (5 . 10) (6 . 11) (7 . 12) (8 . 13) (16 . 14) (18 . 16) (19 . 18) (20 . 19) (23 . 20)) 3.573 {0/38:66} B:0 2.66672 [ 3.00004] ((1 . 12) (2 . 13) (3 . 14) (4 . 16) (5 . 18) (6 . 19)) 4.026 {0/6:15} B:0 2.66818 [ 3.00106] ((1 . 12) (2 . 13) (3 . 14) (4 . 16) (7 . 18) (8 . 19)) 9.308 {0/6:15} B:0 3.20013 [ 3.60009] ((1 . 8) (2 . 9) (3 . 10) (7 . 14) (8 . 16)) 5.834 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.8120 [and 1/min{score2}: 0.7219] [3865, 2037]: Comparing 1m6y_A and 1h1d_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 16 (9 H + 7 S) secondary structure elements in 1h1d_A, of which 16 satisfy the size requirements. 1.23137 [ 1.23137] ((1 . 3) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 9) (8 . 10) (16 . 11) (18 . 12) (19 . 14) (20 . 15) (23 . 16)) 4.140 {0/41:78} B:0 2.66671 [ 2.66671] ((1 . 9) (2 . 10) (3 . 11) (4 . 12) (5 . 14) (6 . 15)) 3.935 {0/5:15} B:0 3.07696 [ 3.07696] ((7 . 3) (8 . 4) (16 . 5) (18 . 6) (19 . 7) (23 . 8)) 4.485 {1/4:15} B:0 3.20006 [ 3.20006] ((1 . 5) (2 . 6) (3 . 7) (4 . 8) (8 . 10)) 4.719 {0/4:10} B:0 3.20011 [ 3.20011] ((1 . 5) (2 . 6) (3 . 7) (4 . 8) (7 . 11)) 5.502 {0/6:10} B:0 SIMILARITY (1/min{score1}): 0.8552 [and 1/min{score2}: 0.8552] [3865, 2249]: Comparing 1m6y_A and 1hnn_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 23 (12 H + 11 S) secondary structure elements in 1hnn_A, of which 18 satisfy the size requirements. 1.45567 [ 1.63715] ((1 . 3) (2 . 4) (4 . 7) (5 . 8) (6 . 11) (8 . 12) (16 . 14) (18 . 16) (19 . 19) (20 . 20) (23 . 23)) 3.127 {1/30:55} B:0 3.20020 [ 3.60014] ((1 . 3) (2 . 4) (4 . 7) (5 . 8) (8 . 11)) 6.401 {0/2:10} B:0 3.20031 [ 3.60022] ((2 . 12) (3 . 14) (4 . 16) (5 . 19) (8 . 21)) 7.201 {0/1:10} B:0 3.20062 [ 3.60044] ((2 . 12) (3 . 14) (4 . 16) (7 . 19) (8 . 21)) 8.542 {0/2:10} B:0 3.20069 [ 3.60049] ((1 . 3) (2 . 4) (4 . 7) (5 . 9) (8 . 11)) 8.784 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.7134 [and 1/min{score2}: 0.6454] [3865, 2364]: Comparing 1m6y_A and 1i1n_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 21 (11 H + 10 S) secondary structure elements in 1i1n_A, of which 16 satisfy the size requirements. 3.20013 [ 3.20013] ((1 . 6) (2 . 7) (3 . 8) (4 . 9) (8 . 12)) 5.829 {0/4:10} B:0 3.20016 [ 3.20016] ((1 . 8) (2 . 9) (3 . 10) (4 . 12) (7 . 16)) 6.052 {0/3:10} B:0 3.20021 [ 3.20021] ((1 . 8) (2 . 9) (3 . 10) (7 . 16) (8 . 18)) 6.523 {0/3:10} B:0 4.00000 [ 4.00000] ((2 . 15) (3 . 16) (4 . 18) (6 . 20)) 2.627 {0/1:6} B:0 4.00007 [ 4.00007] ((16 . 8) (18 . 9) (19 . 10) (20 . 12)) 5.776 {0/1:6} B:0 SIMILARITY (1/min{score1}): 0.6873 [and 1/min{score2}: 0.6873] [3865, 2390]: Comparing 1m6y_A and 1i4w_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 27 (18 H + 9 S) secondary structure elements in 1i4w_A, of which 22 satisfy the size requirements. 1.23118 [ 1.69246] ((1 . 2) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 9) (8 . 11) (16 . 12) (18 . 14) (19 . 15) (20 . 17) (23 . 22)) 3.759 {0/45:78} B:0 1.33510 [ 1.83401] ((2 . 4) (3 . 5) (4 . 6) (5 . 7) (7 . 9) (8 . 11) (16 . 12) (18 . 14) (19 . 15) (20 . 17) (22 . 18) (23 . 22)) 5.341 {1/39:66} B:0 1.89376 [ 2.14065] ((1 . 2) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 9) (8 . 11) (16 . 12) (18 . 14) (19 . 15) (23 . 17)) 3.777 {6/34:66} B:0 3.20003 [ 4.40001] ((2 . 11) (3 . 12) (4 . 14) (5 . 15) (6 . 17)) 3.956 {0/1:10} B:0 3.20007 [ 4.40003] ((1 . 12) (2 . 14) (3 . 15) (4 . 17) (5 . 18)) 4.892 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.8122 [and 1/min{score2}: 0.5909] [3865, 2435]: Comparing 1m6y_A and 1i9g_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 24 (8 H + 16 S) secondary structure elements in 1i9g_A, of which 22 satisfy the size requirements. 1.45459 [ 2.00002] ((1 . 9) (2 . 10) (3 . 11) (4 . 12) (5 . 13) (6 . 14) (8 . 16) (16 . 17) (18 . 19) (19 . 20) (23 . 24)) 2.457 {0/24:55} B:0 2.66671 [ 3.66669] ((1 . 9) (3 . 11) (5 . 13) (6 . 14) (7 . 17) (8 . 19)) 3.934 {0/8:15} B:0 3.20001 [ 4.40000] ((2 . 16) (3 . 17) (4 . 19) (5 . 20) (6 . 21)) 2.896 {0/1:10} B:0 3.20012 [ 4.40005] ((1 . 11) (2 . 12) (3 . 13) (4 . 14) (7 . 17)) 5.640 {0/5:10} B:0 3.20012 [ 4.40005] ((2 . 10) (3 . 11) (4 . 12) (5 . 13) (8 . 14)) 5.702 {0/1:10} B:0 SIMILARITY (1/min{score1}): 0.7497 [and 1/min{score2}: 0.5454] [3865, 2533]: Comparing 1m6y_A and 1im8_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 19 (11 H + 8 S) secondary structure elements in 1im8_A, of which 16 satisfy the size requirements. 2.66669 [ 2.66669] ((1 . 3) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (8 . 13)) 3.281 {0/6:15} B:0 2.66689 [ 2.66689] ((1 . 3) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 9)) 5.774 {0/3:15} B:0 3.20088 [ 3.20088] ((3 . 3) (4 . 4) (5 . 5) (8 . 6) (16 . 17)) 9.312 {0/2:10} B:0 3.20109 [ 3.20109] ((3 . 3) (4 . 4) (6 . 6) (7 . 7) (16 . 17)) 9.840 {0/4:10} B:0 4.00004 [ 4.00004] ((16 . 5) (18 . 6) (19 . 7) (20 . 8)) 5.049 {0/0:6} B:0 SIMILARITY (1/min{score1}): 0.8118 [and 1/min{score2}: 0.8118] [3865, 2545]: Comparing 1m6y_A and 1inl_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 25 (11 H + 14 S) secondary structure elements in 1inl_A, of which 23 satisfy the size requirements. 1.24035 [ 1.77248] ((1 . 8) (2 . 9) (3 . 10) (4 . 11) (5 . 12) (6 . 14) (7 . 15) (8 . 16) (16 . 17) (18 . 19) (19 . 20) (20 . 21) (23 . 22)) 5.031 {2/40:78} B:0 1.33470 [ 1.91713] ((1 . 8) (2 . 9) (3 . 10) (4 . 11) (5 . 12) (6 . 14) (7 . 15) (8 . 16) (18 . 19) (19 . 20) (20 . 21) (23 . 22)) 4.625 {1/36:66} B:0 1.34994 [ 1.92234] ((1 . 8) (2 . 9) (3 . 10) (4 . 11) (6 . 14) (7 . 15) (8 . 16) (16 . 17) (18 . 19) (19 . 20) (20 . 21) (23 . 22)) 4.762 {2/32:66} B:0 1.45607 [ 2.09142] ((1 . 8) (2 . 9) (3 . 10) (4 . 11) (6 . 14) (7 . 15) (8 . 16) (18 . 19) (19 . 20) (20 . 21) (23 . 22)) 4.176 {1/29:55} B:0 1.92810 [ 2.14890] ((1 . 8) (2 . 9) (3 . 10) (4 . 11) (5 . 13) (6 . 14) (7 . 15) (8 . 16) (16 . 17) (18 . 19) (19 . 20) (20 . 21) (23 . 22)) 5.177 {7/38:78} B:0 SIMILARITY (1/min{score1}): 0.8062 [and 1/min{score2}: 0.5642] [3865, 2649]: Comparing 1m6y_A and 1ixk_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 28 (14 H + 14 S) secondary structure elements in 1ixk_A, of which 24 satisfy the size requirements. 1.23085 [ 1.84618] ((1 . 11) (2 . 12) (3 . 13) (4 . 14) (5 . 15) (6 . 16) (7 . 17) (8 . 18) (16 . 19) (18 . 21) (19 . 22) (20 . 23) (23 . 28)) 2.502 {0/41:78} B:0 3.20010 [ 4.80003] ((1 . 15) (3 . 17) (4 . 18) (5 . 19) (6 . 21)) 5.406 {0/4:10} B:0 3.20015 [ 4.80005] ((1 . 19) (2 . 21) (3 . 22) (4 . 23) (6 . 27)) 6.039 {0/4:10} B:0 3.20059 [ 4.80017] ((1 . 13) (3 . 15) (5 . 17) (7 . 19) (8 . 21)) 8.426 {0/4:10} B:0 3.20065 [ 4.80019] ((1 . 13) (2 . 14) (3 . 15) (4 . 16) (5 . 17)) 8.637 {0/2:10} B:0 SIMILARITY (1/min{score1}): 0.8124 [and 1/min{score2}: 0.5417] [3865, 2858]: Comparing 1m6y_A and 1jg1_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 20 (10 H + 10 S) secondary structure elements in 1jg1_A, of which 14 satisfy the size requirements. 3.20001 [ 2.80001] ((1 . 7) (2 . 8) (3 . 9) (4 . 10) (8 . 18)) 2.731 {0/3:10} B:0 3.20016 [ 2.80024] ((1 . 9) (2 . 10) (3 . 11) (4 . 12) (7 . 16)) 6.069 {0/4:10} B:0 3.20027 [ 2.80041] ((1 . 7) (2 . 10) (3 . 11) (4 . 12) (7 . 16)) 6.958 {0/6:10} B:0 3.20036 [ 2.80053] ((1 . 9) (2 . 10) (4 . 15) (5 . 16) (6 . 18)) 7.435 {0/0:10} B:0 3.20061 [ 2.80091] ((1 . 9) (2 . 10) (3 . 11) (4 . 12) (6 . 15)) 8.501 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.6873 [and 1/min{score2}: 0.7854] [3865, 3018]: Comparing 1m6y_A and 1jqe_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 25 (14 H + 11 S) secondary structure elements in 1jqe_A, of which 22 satisfy the size requirements. 1.24116 [ 1.69634] ((1 . 2) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 9) (8 . 10) (16 . 12) (18 . 14) (19 . 16) (20 . 17) (23 . 25)) 4.975 {2/39:78} B:0 1.33397 [ 1.83358] ((1 . 2) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (8 . 10) (16 . 12) (18 . 14) (19 . 16) (20 . 17) (23 . 25)) 4.455 {0/32:66} B:0 1.34819 [ 1.83912] ((1 . 2) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (8 . 10) (16 . 12) (18 . 14) (19 . 16) (22 . 20) (23 . 25)) 4.836 {2/33:66} B:0 1.35172 [ 1.84051] ((1 . 3) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (7 . 9) (8 . 10) (16 . 12) (18 . 14) (19 . 16) (23 . 25)) 4.196 {2/31:66} B:0 2.30719 [ 3.15120] ((1 . 2) (7 . 5) (18 . 14) (19 . 16) (20 . 17) (22 . 20) (23 . 25)) 7.173 {1/10:21} B:0 SIMILARITY (1/min{score1}): 0.8057 [and 1/min{score2}: 0.5895] [3865, 3051]: Comparing 1m6y_A and 1jsx_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 15 (7 H + 8 S) secondary structure elements in 1jsx_A, of which 15 satisfy the size requirements. 1.45493 [ 1.36410] ((1 . 3) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (8 . 9) (16 . 10) (18 . 12) (20 . 14) (23 . 15)) 4.199 {0/29:55} B:0 1.60021 [ 1.50025] ((1 . 3) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (8 . 9) (18 . 12) (20 . 14) (23 . 15)) 3.867 {0/26:45} B:0 3.20007 [ 3.00008] ((3 . 3) (4 . 4) (5 . 5) (6 . 6) (8 . 9)) 4.865 {0/2:10} B:0 3.20141 [ 3.00171] ((7 . 1) (16 . 10) (19 . 13) (20 . 14) (23 . 15)) 10.484 {0/5:10} B:0 3.61934 [ 3.48640] ((16 . 5) (18 . 6) (19 . 7) (20 . 9) (22 . 10)) 9.093 {2/7:10} B:0 SIMILARITY (1/min{score1}): 0.7494 [and 1/min{score2}: 0.7992] [3865, 3391]: Comparing 1m6y_A and 1kpg_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 21 (14 H + 7 S) secondary structure elements in 1kpg_A, of which 19 satisfy the size requirements. 2.28604 [ 2.71448] ((1 . 3) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 10) (7 . 12)) 5.634 {0/7:21} B:0 2.59184 [ 2.62381] ((1 . 3) (2 . 4) (3 . 5) (4 . 6) (5 . 7) (6 . 8) (8 . 10) (16 . 12) (18 . 13) (19 . 16) (20 . 17) (22 . 18) (23 . 21)) 4.634 {11/43:78} B:0 3.20017 [ 3.80010] ((1 . 3) (4 . 4) (5 . 5) (6 . 6) (19 . 20)) 6.202 {0/6:10} B:0 3.20041 [ 3.80025] ((1 . 2) (4 . 4) (5 . 5) (6 . 6) (19 . 20)) 7.711 {0/6:10} B:0 3.20052 [ 3.80031] ((2 . 10) (3 . 12) (4 . 13) (7 . 16) (8 . 17)) 8.166 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.8041 [and 1/min{score2}: 0.6806] [3865, 3524]: Comparing 1m6y_A and 1l3i_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 16 (7 H + 9 S) secondary structure elements in 1l3i_A, of which 14 satisfy the size requirements. 1.33352 [ 1.16694] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (7 . 8) (8 . 9) (16 . 10) (18 . 12) (19 . 13) (23 . 16)) 3.274 {0/29:66} B:0 2.66668 [ 2.33335] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (8 . 12)) 2.606 {0/6:15} B:0 3.20005 [ 2.80008] ((3 . 2) (4 . 3) (5 . 6) (7 . 8) (8 . 9)) 4.600 {0/3:10} B:0 3.20013 [ 2.80019] ((1 . 4) (2 . 5) (3 . 6) (4 . 7) (7 . 10)) 5.740 {0/4:10} B:0 3.20029 [ 2.80044] ((1 . 2) (2 . 5) (5 . 8) (7 . 10) (8 . 12)) 7.085 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.7499 [and 1/min{score2}: 0.8569] [3865, 3577]: Comparing 1m6y_A and 1l9k_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 19 (10 H + 9 S) secondary structure elements in 1l9k_A, of which 18 satisfy the size requirements. 3.20003 [ 3.60002] ((3 . 5) (4 . 6) (5 . 7) (6 . 8) (8 . 12)) 4.096 {0/2:10} B:0 3.20014 [ 3.60010] ((1 . 5) (2 . 6) (3 . 7) (4 . 8) (6 . 12)) 5.939 {0/4:10} B:0 3.20031 [ 3.60022] ((1 . 7) (2 . 8) (4 . 12) (7 . 13) (8 . 14)) 7.167 {0/2:10} B:0 3.20035 [ 3.60025] ((1 . 7) (4 . 12) (5 . 13) (6 . 14) (8 . 16)) 7.416 {0/4:10} B:0 3.25827 [ 3.64134] ((7 . 2) (16 . 13) (18 . 14) (20 . 16) (23 . 17)) 9.655 {1/6:10} B:0 SIMILARITY (1/min{score1}): 0.6248 [and 1/min{score2}: 0.5554] [3865, 3858]: Comparing 1m6y_A and 1m6e_X, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 20 (12 H + 8 S) secondary structure elements in 1m6e_X, of which 18 satisfy the size requirements. 1.45507 [ 1.63674] ((1 . 2) (2 . 4) (3 . 5) (4 . 7) (5 . 8) (6 . 9) (8 . 10) (16 . 11) (18 . 12) (19 . 15) (23 . 20)) 4.546 {0/25:55} B:0 1.60041 [ 1.80029] ((1 . 2) (2 . 4) (3 . 5) (4 . 7) (6 . 9) (8 . 10) (16 . 11) (18 . 12) (19 . 15) (23 . 20)) 4.575 {0/19:45} B:0 2.29414 [ 2.57736] ((1 . 2) (2 . 4) (4 . 7) (5 . 8) (6 . 9) (8 . 10) (21 . 18)) 7.734 {1/13:21} B:0 2.66702 [ 3.00025] ((4 . 7) (5 . 8) (6 . 9) (8 . 10) (21 . 18) (23 . 20)) 6.455 {0/10:15} B:0 2.66707 [ 3.00028] ((1 . 2) (2 . 4) (3 . 5) (4 . 7) (8 . 9) (19 . 15)) 6.687 {0/6:15} B:0 SIMILARITY (1/min{score1}): 0.8680 [and 1/min{score2}: 0.7738] [3865, 3865]: Comparing 1m6y_A and 1m6y_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. 1.00000 [ 1.00000] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (16 . 16) (18 . 18) (19 . 19) (20 . 20) (21 . 21) (22 . 22) (23 . 23)) 0.000 {0/84:120} B:0 1.06667 [ 1.06667] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (9 . 9) (16 . 16) (18 . 18) (19 . 19) (20 . 20) (22 . 22) (23 . 23)) 0.000 {0/69:105} B:0 2.00008 [ 2.00008] ((4 . 2) (5 . 3) (6 . 4) (16 . 16) (19 . 19) (21 . 21) (22 . 22) (23 . 23)) 3.544 {0/19:28} B:0 2.28664 [ 2.28664] ((1 . 1) (2 . 4) (4 . 6) (5 . 7) (16 . 16) (19 . 19) (23 . 23)) 7.345 {0/10:21} B:0 2.28664 [ 2.28664] ((1 . 1) (4 . 2) (6 . 4) (7 . 5) (16 . 16) (19 . 19) (23 . 23)) 7.345 {0/10:21} B:0 SIMILARITY (1/min{score1}): 1.0000 [and 1/min{score2}: 1.0000] [3865, 3944]: Comparing 1m6y_A and 1mjf_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 25 (11 H + 14 S) secondary structure elements in 1mjf_A, of which 24 satisfy the size requirements. 1.23239 [ 1.84663] ((1 . 8) (2 . 9) (3 . 10) (4 . 11) (5 . 12) (6 . 14) (7 . 15) (8 . 16) (16 . 17) (18 . 19) (19 . 20) (20 . 21) (23 . 22)) 4.811 {1/40:78} B:0 1.33493 [ 2.00048] ((1 . 8) (2 . 9) (3 . 10) (4 . 11) (6 . 14) (7 . 15) (8 . 16) (16 . 17) (18 . 19) (19 . 20) (20 . 21) (23 . 22)) 4.391 {1/32:66} B:0 3.20004 [ 4.80001] ((1 . 10) (2 . 11) (6 . 14) (7 . 15) (8 . 16)) 4.348 {0/4:10} B:0 3.20015 [ 4.80004] ((1 . 8) (2 . 9) (3 . 10) (4 . 11) (8 . 14)) 5.961 {0/3:10} B:0 3.20064 [ 4.80019] ((1 . 8) (4 . 9) (5 . 10) (6 . 11) (8 . 14)) 8.596 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.8114 [and 1/min{score2}: 0.5415] [3865, 4204]: Comparing 1m6y_A and 1ne2_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 15 (7 H + 8 S) secondary structure elements in 1ne2_A, of which 14 satisfy the size requirements. 1.33351 [ 1.16694] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (8 . 9) (16 . 10) (18 . 11) (19 . 12) (20 . 13) (23 . 15)) 3.253 {0/37:66} B:0 1.45470 [ 1.27296] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (8 . 9) (16 . 10) (18 . 11) (19 . 12) (23 . 15)) 3.358 {0/26:55} B:0 1.45627 [ 1.27529] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (8 . 9) (16 . 10) (18 . 11) (22 . 12) (23 . 15)) 6.107 {0/27:55} B:0 2.28575 [ 2.00005] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (8 . 11)) 3.132 {0/10:21} B:0 3.20013 [ 2.80020] ((2 . 5) (3 . 6) (4 . 7) (7 . 10) (8 . 11)) 5.800 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.8116 [and 1/min{score2}: 0.9269] [3865, 4296]: Comparing 1m6y_A and 1nkv_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 20 (12 H + 8 S) secondary structure elements in 1nkv_A, of which 17 satisfy the size requirements. 1.33468 [ 1.41779] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (8 . 8) (16 . 10) (18 . 12) (20 . 16) (21 . 17) (23 . 20)) 5.377 {0/39:66} B:0 2.43252 [ 2.44338] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (8 . 8) (16 . 10) (18 . 12) (19 . 15) (20 . 16) (22 . 17) (23 . 20)) 5.901 {11/46:78} B:0 2.66684 [ 2.83348] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 8)) 5.419 {0/4:15} B:0 2.81408 [ 2.82376] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 7) (8 . 8) (16 . 10) (18 . 12) (19 . 15) (22 . 17) (23 . 20)) 5.424 {10/36:66} B:0 3.20023 [ 3.40019] ((1 . 2) (2 . 5) (3 . 6) (4 . 7) (7 . 10)) 6.669 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.8695 [and 1/min{score2}: 0.8195] [3865, 4384]: Comparing 1m6y_A and 1nt2_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 21 (8 H + 13 S) secondary structure elements in 1nt2_A, of which 18 satisfy the size requirements. 1.23157 [ 1.38518] ((1 . 7) (2 . 8) (3 . 9) (4 . 10) (5 . 11) (6 . 12) (7 . 13) (8 . 14) (16 . 15) (18 . 17) (19 . 19) (20 . 20) (23 . 21)) 3.907 {1/45:78} B:0 1.33367 [ 1.50024] ((2 . 8) (3 . 9) (4 . 10) (5 . 11) (6 . 12) (7 . 13) (8 . 14) (16 . 15) (18 . 17) (19 . 19) (20 . 20) (23 . 21)) 3.802 {0/38:66} B:0 2.66671 [ 3.00003] ((1 . 13) (2 . 14) (3 . 15) (4 . 17) (5 . 19) (6 . 20)) 3.930 {0/6:15} B:0 2.66721 [ 3.00038] ((1 . 9) (2 . 10) (3 . 11) (5 . 13) (7 . 15) (8 . 17)) 7.216 {0/7:15} B:0 2.66738 [ 3.00050] ((1 . 9) (2 . 10) (3 . 11) (4 . 12) (5 . 13) (7 . 15)) 7.710 {0/7:15} B:0 SIMILARITY (1/min{score1}): 0.8120 [and 1/min{score2}: 0.7219] [3865, 4401]: Comparing 1m6y_A and 1nv8_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 22 (13 H + 9 S) secondary structure elements in 1nv8_A, of which 19 satisfy the size requirements. 1.33460 [ 1.58409] ((1 . 8) (2 . 9) (3 . 10) (4 . 11) (5 . 12) (6 . 13) (7 . 14) (8 . 15) (16 . 18) (18 . 19) (19 . 20) (23 . 22)) 2.960 {1/31:66} B:0 1.45669 [ 1.72855] ((1 . 8) (2 . 9) (3 . 10) (4 . 11) (5 . 12) (6 . 13) (7 . 14) (8 . 15) (16 . 18) (18 . 19) (23 . 22)) 2.706 {1/25:55} B:0 2.66686 [ 3.16679] ((1 . 8) (2 . 9) (3 . 10) (4 . 11) (5 . 12) (8 . 13)) 5.604 {0/3:15} B:0 2.66757 [ 3.16721] ((3 . 14) (4 . 15) (5 . 18) (6 . 19) (7 . 20) (8 . 21)) 8.184 {0/7:15} B:0 3.20009 [ 3.80005] ((16 . 18) (18 . 19) (19 . 20) (20 . 21) (23 . 22)) 5.211 {0/3:10} B:0 SIMILARITY (1/min{score1}): 0.7493 [and 1/min{score2}: 0.6313] [3865, 4412]: Comparing 1m6y_A and 1nw3_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 23 (12 H + 11 S) secondary structure elements in 1nw3_A, of which 21 satisfy the size requirements. 1.45468 [ 1.90915] ((1 . 10) (2 . 11) (3 . 12) (4 . 13) (5 . 14) (6 . 15) (8 . 17) (16 . 18) (18 . 19) (20 . 21) (23 . 22)) 3.207 {0/29:55} B:0 1.72064 [ 1.96745] ((1 . 10) (2 . 11) (3 . 12) (4 . 13) (5 . 14) (6 . 15) (7 . 16) (8 . 17) (16 . 18) (18 . 19) (20 . 21) (23 . 22)) 3.603 {6/39:66} B:0 2.66687 [ 3.50009] ((1 . 10) (2 . 11) (3 . 12) (4 . 13) (5 . 14) (8 . 15)) 5.638 {0/3:15} B:0 3.20101 [ 4.20045] ((1 . 14) (4 . 17) (5 . 18) (6 . 19) (8 . 21)) 9.662 {0/6:10} B:0 3.31569 [ 4.25300] ((1 . 16) (2 . 17) (3 . 18) (4 . 19) (6 . 21)) 4.565 {1/5:10} B:0 SIMILARITY (1/min{score1}): 0.7483 [and 1/min{score2}: 0.5710] [3865, 4413]: Comparing 1m6y_A and 1nw6_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 21 (11 H + 10 S) secondary structure elements in 1nw6_A, of which 19 satisfy the size requirements. 2.66672 [ 3.16670] ((1 . 15) (2 . 16) (3 . 17) (4 . 18) (5 . 19) (6 . 20)) 3.950 {0/6:15} B:0 2.66672 [ 3.16670] ((3 . 2) (4 . 3) (6 . 7) (18 . 18) (19 . 19) (20 . 20)) 4.107 {0/9:15} B:0 2.66675 [ 3.16672] ((4 . 3) (5 . 5) (6 . 7) (16 . 17) (18 . 18) (19 . 19)) 4.521 {0/6:15} B:0 2.66676 [ 3.16672] ((2 . 3) (5 . 5) (6 . 7) (16 . 17) (18 . 18) (19 . 19)) 4.659 {0/5:15} B:0 2.66679 [ 3.16674] ((1 . 2) (2 . 3) (5 . 5) (16 . 17) (18 . 18) (20 . 20)) 4.960 {0/4:15} B:0 SIMILARITY (1/min{score1}): 0.8119 [and 1/min{score2}: 0.6840] [3865, 4492]: Comparing 1m6y_A and 1o54_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 26 (10 H + 16 S) secondary structure elements in 1o54_A, of which 20 satisfy the size requirements. 1.33350 [ 1.66675] ((1 . 10) (2 . 11) (3 . 12) (4 . 13) (5 . 14) (6 . 16) (8 . 18) (16 . 19) (18 . 21) (19 . 22) (20 . 23) (23 . 26)) 3.200 {0/32:66} B:0 2.66671 [ 3.33336] ((1 . 10) (2 . 11) (3 . 12) (5 . 14) (7 . 19) (8 . 21)) 3.923 {0/6:15} B:0 3.20001 [ 4.00000] ((2 . 18) (3 . 19) (4 . 21) (5 . 22) (6 . 23)) 2.597 {0/1:10} B:0 3.20017 [ 4.00009] ((1 . 12) (2 . 13) (3 . 14) (4 . 16) (7 . 19)) 6.171 {0/5:10} B:0 3.88726 [ 4.41364] ((1 . 19) (2 . 21) (3 . 22) (4 . 23) (6 . 26)) 6.176 {1/3:10} B:0 SIMILARITY (1/min{score1}): 0.8118 [and 1/min{score2}: 0.6498] [3865, 4567]: Comparing 1m6y_A and 1o9g_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 17 (10 H + 7 S) secondary structure elements in 1o9g_A, of which 15 satisfy the size requirements. 1.33396 [ 1.25076] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 9) (7 . 10) (8 . 11) (16 . 13) (18 . 14) (20 . 15) (23 . 16)) 4.444 {0/36:66} B:0 1.45464 [ 1.36375] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (6 . 9) (7 . 10) (8 . 11) (16 . 13) (18 . 14) (23 . 16)) 2.950 {0/28:55} B:0 2.66691 [ 2.50029] ((1 . 2) (2 . 3) (3 . 4) (4 . 5) (5 . 6) (8 . 9)) 5.892 {0/4:15} B:0 3.20005 [ 3.00006] ((1 . 10) (2 . 11) (3 . 13) (4 . 14) (6 . 15)) 4.589 {0/5:10} B:0 3.20006 [ 3.00007] ((1 . 4) (2 . 5) (6 . 9) (7 . 10) (8 . 11)) 4.762 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.7496 [and 1/min{score2}: 0.7995] [3865, 4860]: Comparing 1m6y_A and 1p1c_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 18 (10 H + 8 S) secondary structure elements in 1p1c_A, of which 16 satisfy the size requirements. 1.23277 [ 1.23277] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (16 . 9) (18 . 12) (19 . 15) (20 . 17) (23 . 18)) 5.134 {1/39:78} B:0 1.33369 [ 1.33369] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (16 . 9) (18 . 12) (19 . 15) (23 . 18)) 3.865 {0/29:66} B:0 1.33388 [ 1.33388] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (7 . 7) (8 . 8) (16 . 9) (18 . 12) (20 . 17) (23 . 18)) 4.296 {0/32:66} B:0 3.20006 [ 3.20006] ((1 . 5) (3 . 7) (4 . 8) (5 . 9) (6 . 12)) 4.743 {0/4:10} B:0 3.20011 [ 3.20011] ((1 . 5) (3 . 7) (4 . 8) (5 . 10) (6 . 12)) 5.534 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.8113 [and 1/min{score2}: 0.8113] [3865, 4936]: Comparing 1m6y_A and 1p91_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 21 (9 H + 12 S) secondary structure elements in 1p91_A, of which 18 satisfy the size requirements. 1.45791 [ 1.63873] ((1 . 6) (2 . 7) (3 . 8) (4 . 9) (5 . 10) (6 . 11) (8 . 12) (16 . 13) (18 . 15) (20 . 17) (23 . 21)) 7.225 {0/29:55} B:0 1.60065 [ 1.80046] ((1 . 6) (2 . 7) (3 . 8) (4 . 9) (5 . 10) (6 . 11) (8 . 12) (16 . 13) (18 . 15) (23 . 21)) 5.142 {0/21:45} B:0 2.00120 [ 2.25084] ((1 . 5) (2 . 7) (4 . 9) (5 . 10) (6 . 11) (7 . 13) (20 . 17) (23 . 21)) 7.080 {0/19:28} B:0 2.66670 [ 3.00003] ((1 . 6) (2 . 7) (3 . 8) (5 . 10) (7 . 13) (8 . 15)) 3.687 {0/8:15} B:0 3.20003 [ 3.60002] ((1 . 6) (2 . 7) (4 . 9) (7 . 13) (8 . 15)) 4.031 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.6864 [and 1/min{score2}: 0.6105] [3865, 5033]: Comparing 1m6y_A and 1pjz_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 17 (8 H + 9 S) secondary structure elements in 1pjz_A, of which 16 satisfy the size requirements. 1.33413 [ 1.33413] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (6 . 8) (7 . 9) (8 . 10) (16 . 12) (18 . 13) (20 . 15) (21 . 16) (23 . 17)) 4.716 {0/31:66} B:0 2.28621 [ 2.28621] ((1 . 3) (2 . 10) (4 . 13) (7 . 14) (8 . 15) (9 . 16) (18 . 17)) 6.267 {0/6:21} B:0 2.47146 [ 2.47146] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (6 . 8) (7 . 9) (8 . 10) (16 . 12) (18 . 13) (19 . 14) (20 . 15) (22 . 16) (23 . 17)) 4.642 {9/37:78} B:0 2.66678 [ 2.66678] ((8 . 2) (16 . 12) (18 . 13) (20 . 15) (21 . 16) (23 . 17)) 4.898 {0/8:15} B:0 2.66682 [ 2.66682] ((1 . 9) (2 . 10) (3 . 12) (4 . 13) (5 . 14) (6 . 15)) 5.219 {0/6:15} B:0 SIMILARITY (1/min{score1}): 0.8658 [and 1/min{score2}: 0.8658] [3865, 5169]: Comparing 1m6y_A and 1q0s_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 19 (12 H + 7 S) secondary structure elements in 1q0s_A, of which 17 satisfy the size requirements. 1.33368 [ 1.41696] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 11) (8 . 13) (16 . 15) (18 . 16) (19 . 17) (20 . 18) (23 . 19)) 3.834 {0/32:66} B:0 1.45466 [ 1.54555] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 11) (8 . 13) (16 . 15) (18 . 16) (19 . 17) (23 . 19)) 3.081 {0/22:55} B:0 1.60062 [ 1.70052] ((1 . 1) (4 . 2) (5 . 3) (6 . 4) (8 . 13) (16 . 15) (18 . 16) (19 . 17) (20 . 18) (23 . 19)) 5.077 {0/17:45} B:0 2.28585 [ 2.42868] ((4 . 2) (6 . 4) (16 . 15) (18 . 16) (19 . 17) (20 . 18) (23 . 19)) 4.501 {0/8:21} B:0 2.72089 [ 2.87883] ((5 . 1) (16 . 15) (18 . 16) (19 . 17) (20 . 18) (23 . 19)) 8.375 {1/7:15} B:0 SIMILARITY (1/min{score1}): 0.7498 [and 1/min{score2}: 0.7057] [3865, 5266]: Comparing 1m6y_A and 1qam_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 19 (12 H + 7 S) secondary structure elements in 1qam_A, of which 16 satisfy the size requirements. 1.33352 [ 1.33352] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (8 . 8) (16 . 9) (18 . 10) (19 . 11) (20 . 13) (23 . 15)) 3.269 {0/33:66} B:0 2.66678 [ 2.66678] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (6 . 6) (7 . 9)) 4.827 {0/8:15} B:0 2.66689 [ 2.66689] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (6 . 8) (7 . 9)) 5.771 {0/6:15} B:0 3.07767 [ 3.07767] ((2 . 8) (3 . 9) (4 . 10) (5 . 11) (6 . 13) (9 . 16)) 8.747 {1/4:15} B:0 3.20020 [ 3.20020] ((1 . 3) (2 . 4) (3 . 5) (4 . 6) (7 . 9)) 6.413 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.8111 [and 1/min{score2}: 0.8111] [3865, 5509]: Comparing 1m6y_A and 1qzz_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 30 (20 H + 10 S) secondary structure elements in 1qzz_A, of which 19 satisfy the size requirements. 1.33362 [ 1.58350] ((1 . 16) (2 . 17) (3 . 18) (4 . 19) (5 . 20) (6 . 21) (8 . 22) (16 . 24) (18 . 26) (19 . 28) (20 . 29) (23 . 30)) 3.649 {0/35:66} B:0 2.66672 [ 3.16670] ((1 . 16) (2 . 17) (3 . 18) (5 . 20) (7 . 24) (8 . 26)) 3.960 {0/8:15} B:0 3.20016 [ 3.80010] ((1 . 18) (2 . 19) (3 . 20) (4 . 21) (7 . 24)) 6.088 {0/3:10} B:0 3.20023 [ 3.80014] ((1 . 18) (3 . 20) (4 . 21) (7 . 24) (8 . 26)) 6.681 {0/5:10} B:0 3.20024 [ 3.80014] ((4 . 17) (5 . 18) (6 . 19) (7 . 20) (8 . 21)) 6.754 {0/2:10} B:0 SIMILARITY (1/min{score1}): 0.7865 [and 1/min{score2}: 0.6727] [3865, 5639]: Comparing 1m6y_A and 1ri5_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 21 (10 H + 11 S) secondary structure elements in 1ri5_A, of which 20 satisfy the size requirements. 1.26203 [ 1.55482] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (8 . 7) (16 . 9) (18 . 11) (19 . 16) (20 . 17) (22 . 20) (23 . 21)) 4.303 {3/43:78} B:0 1.33456 [ 1.66729] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (8 . 7) (16 . 9) (18 . 11) (19 . 16) (20 . 17) (23 . 21)) 3.800 {1/33:66} B:0 1.45467 [ 1.81825] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (8 . 7) (16 . 9) (18 . 11) (20 . 17) (23 . 21)) 3.162 {0/27:55} B:0 1.45632 [ 1.81909] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 6) (8 . 7) (16 . 8) (18 . 11) (20 . 17) (23 . 21)) 3.768 {1/27:55} B:0 2.69861 [ 3.34986] ((7 . 5) (8 . 7) (18 . 11) (19 . 16) (20 . 17) (23 . 21)) 6.402 {1/8:15} B:0 SIMILARITY (1/min{score1}): 0.8109 [and 1/min{score2}: 0.6495] [3865, 5650]: Comparing 1m6y_A and 1rjd_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 23 (15 H + 8 S) secondary structure elements in 1rjd_A, of which 22 satisfy the size requirements. 1.15235 [ 1.57511] ((1 . 4) (2 . 5) (3 . 6) (4 . 7) (5 . 9) (6 . 11) (7 . 12) (8 . 13) (16 . 15) (18 . 16) (19 . 18) (20 . 19) (21 . 21) (23 . 23)) 5.134 {2/43:91} B:0 1.23145 [ 1.69257] ((1 . 4) (2 . 5) (3 . 6) (4 . 7) (5 . 8) (6 . 11) (7 . 12) (8 . 13) (16 . 15) (18 . 16) (19 . 18) (20 . 19) (23 . 23)) 4.276 {0/36:78} B:0 2.66688 [ 3.66675] ((3 . 4) (4 . 5) (5 . 6) (6 . 7) (18 . 19) (23 . 23)) 5.684 {0/6:15} B:0 2.66694 [ 3.66677] ((3 . 4) (4 . 5) (5 . 6) (6 . 7) (16 . 18) (18 . 19)) 6.052 {0/5:15} B:0 1.14729 [ 1.57314] ((1 . 4) (2 . 5) (3 . 6) (4 . 7) (5 . 8) (6 . 11) (7 . 12) (8 . 13) (9 . 2) (16 . 15) (18 . 16) (19 . 18) (20 . 19) (23 . 23)) 6.237 {1/41:91} B:1 SIMILARITY (1/min{score1}): 0.8716 [and 1/min{score2}: 0.6357] [3865, 6005]: Comparing 1m6y_A and 1ufk_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 25 (10 H + 15 S) secondary structure elements in 1ufk_A, of which 24 satisfy the size requirements. 1.23125 [ 1.84630] ((1 . 11) (2 . 12) (3 . 13) (4 . 14) (5 . 15) (6 . 16) (7 . 17) (8 . 18) (16 . 19) (18 . 22) (19 . 23) (20 . 24) (23 . 25)) 3.919 {0/37:78} B:0 1.33343 [ 2.00003] ((1 . 11) (2 . 12) (3 . 13) (4 . 14) (5 . 15) (6 . 16) (7 . 17) (8 . 18) (16 . 19) (18 . 22) (19 . 23) (23 . 25)) 2.773 {0/28:66} B:0 2.28574 [ 3.42858] ((1 . 11) (2 . 12) (3 . 13) (4 . 14) (5 . 15) (6 . 16) (8 . 22)) 3.085 {0/7:21} B:0 2.66677 [ 4.00003] ((1 . 17) (2 . 18) (3 . 19) (4 . 22) (5 . 23) (6 . 24)) 4.768 {0/4:15} B:0 2.66780 [ 4.00034] ((3 . 11) (4 . 12) (5 . 13) (6 . 14) (7 . 15) (8 . 16)) 8.664 {0/4:15} B:0 SIMILARITY (1/min{score1}): 0.8122 [and 1/min{score2}: 0.5416] [3865, 6027]: Comparing 1m6y_A and 1uir_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 29 (13 H + 16 S) secondary structure elements in 1uir_A, of which 25 satisfy the size requirements. 1.24066 [ 1.92570] ((1 . 7) (2 . 8) (3 . 9) (4 . 10) (5 . 11) (6 . 14) (7 . 15) (8 . 16) (16 . 18) (18 . 20) (19 . 21) (20 . 22) (23 . 24)) 5.312 {2/40:78} B:0 1.34993 [ 2.08775] ((1 . 7) (2 . 8) (3 . 9) (4 . 10) (6 . 14) (7 . 15) (8 . 16) (16 . 17) (18 . 20) (19 . 21) (20 . 22) (23 . 24)) 4.744 {2/32:66} B:0 1.47565 [ 2.27836] ((1 . 7) (2 . 8) (3 . 9) (4 . 10) (6 . 14) (7 . 15) (8 . 16) (16 . 17) (18 . 20) (20 . 22) (23 . 24)) 4.301 {2/28:55} B:0 3.20003 [ 5.00001] ((1 . 7) (2 . 10) (6 . 14) (7 . 15) (8 . 16)) 3.938 {0/5:10} B:0 3.31591 [ 5.03177] ((4 . 8) (5 . 9) (6 . 10) (7 . 11) (8 . 14)) 7.053 {1/5:10} B:0 SIMILARITY (1/min{score1}): 0.8060 [and 1/min{score2}: 0.5193] [3865, 6132]: Comparing 1m6y_A and 1uwv_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 32 (10 H + 22 S) secondary structure elements in 1uwv_A, of which 27 satisfy the size requirements. 1.33375 [ 2.25009] ((1 . 20) (2 . 21) (3 . 22) (4 . 23) (5 . 24) (6 . 25) (8 . 27) (16 . 28) (18 . 29) (19 . 30) (20 . 31) (23 . 32)) 4.022 {0/31:66} B:0 1.57090 [ 2.17557] ((1 . 20) (2 . 21) (3 . 22) (4 . 23) (5 . 24) (6 . 25) (7 . 26) (8 . 27) (16 . 28) (18 . 29) (19 . 30) (20 . 31) (23 . 32)) 4.097 {6/43:78} B:0 2.66668 [ 4.50000] ((1 . 20) (2 . 21) (3 . 22) (4 . 23) (5 . 24) (8 . 29)) 2.922 {0/6:15} B:0 2.76310 [ 4.52103] ((1 . 26) (2 . 27) (3 . 28) (4 . 29) (5 . 30) (6 . 31)) 4.184 {1/6:15} B:0 3.20013 [ 5.40003] ((1 . 22) (2 . 23) (3 . 24) (4 . 25) (7 . 28)) 5.820 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.7498 [and 1/min{score2}: 0.4596] [3865, 6164]: Comparing 1m6y_A and 1v39, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 22 (11 H + 11 S) secondary structure elements in 1v39, of which 18 satisfy the size requirements. 1.46240 [ 1.64189] ((1 . 4) (2 . 5) (3 . 6) (4 . 7) (5 . 8) (6 . 9) (7 . 10) (8 . 11) (16 . 12) (18 . 13) (23 . 17)) 3.452 {1/18:55} B:0 2.66769 [ 3.00072] ((1 . 4) (2 . 5) (3 . 6) (4 . 7) (5 . 10) (6 . 11)) 8.455 {0/4:15} B:0 3.20008 [ 3.60005] ((2 . 9) (3 . 10) (4 . 11) (5 . 12) (6 . 13)) 5.038 {0/1:10} B:0 3.20010 [ 3.60007] ((1 . 10) (2 . 11) (3 . 12) (4 . 13) (6 . 16)) 5.351 {0/3:10} B:0 3.20013 [ 3.60009] ((1 . 4) (4 . 5) (5 . 6) (6 . 7) (8 . 11)) 5.753 {0/4:10} B:0 SIMILARITY (1/min{score1}): 0.7467 [and 1/min{score2}: 0.6648] [3865, 6352]: Comparing 1m6y_A and 1xva_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 21 (10 H + 11 S) secondary structure elements in 1xva_A, of which 19 satisfy the size requirements. 2.66671 [ 3.16669] ((3 . 2) (4 . 3) (5 . 4) (6 . 5) (16 . 19) (18 . 20)) 3.833 {0/5:15} B:0 2.66678 [ 3.16673] ((4 . 3) (5 . 4) (6 . 5) (19 . 19) (20 . 20) (23 . 21)) 4.847 {0/9:15} B:0 2.66691 [ 3.16681] ((1 . 2) (2 . 5) (3 . 6) (6 . 8) (7 . 9) (8 . 10)) 5.908 {0/9:15} B:0 3.20014 [ 3.80008] ((2 . 3) (3 . 4) (4 . 5) (5 . 6) (8 . 8)) 5.844 {0/0:10} B:0 3.20018 [ 3.80011] ((1 . 2) (2 . 5) (3 . 6) (4 . 8) (7 . 9)) 6.299 {0/7:10} B:0 SIMILARITY (1/min{score1}): 0.7533 [and 1/min{score2}: 0.6759] [3865, 6430]: Comparing 1m6y_A and 2dpm_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 19 (12 H + 7 S) secondary structure elements in 2dpm_A, of which 17 satisfy the size requirements. 1.23188 [ 1.30862] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 12) (7 . 13) (8 . 14) (16 . 15) (18 . 16) (19 . 17) (20 . 18) (23 . 19)) 3.735 {1/37:78} B:0 1.33478 [ 1.41787] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 12) (7 . 13) (8 . 14) (16 . 15) (18 . 16) (20 . 18) (23 . 19)) 3.703 {1/31:66} B:0 1.33545 [ 1.41843] ((1 . 1) (2 . 2) (3 . 3) (4 . 4) (5 . 5) (6 . 12) (7 . 13) (8 . 14) (16 . 15) (18 . 16) (19 . 17) (23 . 19)) 3.032 {1/27:66} B:0 2.66672 [ 2.83338] ((3 . 1) (4 . 2) (6 . 4) (16 . 15) (18 . 16) (19 . 17)) 4.107 {0/4:15} B:0 2.66674 [ 2.83339] ((3 . 1) (6 . 4) (16 . 15) (18 . 16) (19 . 17) (23 . 19)) 4.370 {0/5:15} B:0 SIMILARITY (1/min{score1}): 0.8118 [and 1/min{score2}: 0.7642] [3865, 6629]: Comparing 1m6y_A and 6mht_A, based on their crossing files. There are 23 (15 H + 8 S) secondary structure elements in 1m6y_A, of which 16 satisfy the size requirements. There are 25 (14 H + 11 S) secondary structure elements in 6mht_A, of which 20 satisfy the size requirements. 3.20006 [ 4.00003] ((1 . 4) (2 . 6) (5 . 8) (6 . 9) (19 . 23)) 4.826 {0/6:10} B:0 3.20011 [ 4.00005] ((1 . 4) (2 . 6) (5 . 8) (6 . 9) (19 . 24)) 5.483 {0/6:10} B:0 3.20016 [ 4.00008] ((2 . 1) (3 . 2) (4 . 3) (5 . 4) (6 . 6)) 6.089 {0/0:10} B:0 3.20019 [ 4.00010] ((16 . 8) (18 . 9) (19 . 10) (20 . 12) (23 . 14)) 6.355 {0/3:10} B:0 3.20043 [ 4.00022] ((2 . 6) (3 . 8) (4 . 9) (8 . 12) (19 . 24)) 7.814 {0/5:10} B:0 SIMILARITY (1/min{score1}): 0.7444 [and 1/min{score2}: 0.5982] -------------------------------------------------------------------------------------------------------------------------