------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4204 1ne2_A) ( 115 1af7 ) 0.7853 0.6469 4.4270 ( 0 32 55) 0 0.7853 0.6469 14 17 ( 4204 1ne2_A) ( 439 1boo_A) 0.4286 0.3333 4.4285 ( 0 8 15) 0 0.9951 0.7764 14 18 ( 4204 1ne2_A) ( 800 1dct_A) 0.5000 0.3500 4.2787 ( 0 6 21) 0 0.8559 0.5998 14 20 ( 4204 1ne2_A) ( 869 1dl5_A) 0.4999 0.4374 5.5256 ( 0 11 21) 0 0.8566 0.7497 14 16 ( 4204 1ne2_A) ( 943 1dus_A) 0.8568 0.8568 3.6661 ( 0 34 66) 0 0.8568 0.8568 14 14 ( 4204 1ne2_A) ( 1179 1ej0_A) 0.7849 0.9150 5.1407 ( 0 19 55) 0 0.8523 0.9897 14 12 ( 4204 1ne2_A) ( 1384 1f3l_A) 0.6453 0.3952 4.8823 ( 2 17 45) 0 0.8445 0.4793 14 25 ( 4204 1ne2_A) ( 1596 1fp1_D) 0.8550 0.7489 5.5301 ( 1 39 66) 0 0.8550 0.7489 14 16 ( 4204 1ne2_A) ( 1598 1fp2_A) 0.7659 0.5811 7.7185 ( 4 40 66) 0 0.8556 0.5997 14 20 ( 4204 1ne2_A) ( 1708 1g38_A) 0.7855 0.3929 3.7099 ( 0 25 55) 0 0.8443 0.4282 14 28 ( 4204 1ne2_A) ( 1727 1g55_A) 0.4286 0.3000 4.2976 ( 0 6 15) 0 0.7852 0.5499 14 20 ( 4204 1ne2_A) ( 1737 1g60_A) 0.4285 0.4285 4.9259 ( 0 8 15) 0 0.8569 0.8569 14 14 ( 4204 1ne2_A) ( 1761 1g8a_A) 0.8559 0.6663 3.7834 ( 1 34 66) 0 0.8559 0.6663 14 18 ( 4204 1ne2_A) ( 2037 1h1d_A) 0.8559 0.7494 4.1599 ( 1 36 66) 0 0.9179 0.8069 14 16 ( 4204 1ne2_A) ( 2249 1hnn_A) 0.4286 0.3333 4.0361 ( 0 6 15) 0 0.8543 0.6659 14 18 ( 4204 1ne2_A) ( 2364 1i1n_A) 0.5714 0.5000 3.8276 ( 0 17 28) 0 0.8567 0.7498 14 16 ( 4204 1ne2_A) ( 2390 1i4w_A) 0.8566 0.5454 4.2288 ( 0 36 66) 0 0.8566 0.5454 14 22 ( 4204 1ne2_A) ( 2435 1i9g_A) 0.9280 0.5908 3.9146 ( 0 43 78) 0 0.9280 0.5908 14 22 ( 4204 1ne2_A) ( 2533 1im8_A) 0.8570 0.7499 3.0942 ( 0 34 66) 0 0.8570 0.7499 14 16 ( 4204 1ne2_A) ( 2545 1inl_A) 0.8568 0.5217 3.7034 ( 0 37 66) 0 0.8568 0.5480 14 23 ( 4204 1ne2_A) ( 2649 1ixk_A) 0.9279 0.5416 3.9279 ( 0 47 78) 0 0.9282 0.5416 14 24 ( 4204 1ne2_A) ( 2858 1jg1_A) 0.5000 0.5000 3.8133 ( 0 13 21) 0 0.8566 0.8566 14 14 ( 4204 1ne2_A) ( 3018 1jqe_A) 0.9269 0.5907 5.0146 ( 0 46 78) 0 0.9269 0.5907 14 22 ( 4204 1ne2_A) ( 3051 1jsx_A) 0.9272 0.8657 4.7903 ( 0 46 78) 0 0.9272 0.8657 14 15 ( 4204 1ne2_A) ( 3391 1kpg_A) 0.8569 0.6315 3.4130 ( 0 33 66) 0 0.8569 0.6315 14 19 ( 4204 1ne2_A) ( 3524 1l3i_A) 0.8569 0.8569 3.5237 ( 0 37 66) 0 0.8569 0.8569 14 14 ( 4204 1ne2_A) ( 3577 1l9k_A) 0.8544 0.6659 5.6576 ( 1 33 66) 0 0.8544 0.6659 14 18 ( 4204 1ne2_A) ( 3858 1m6e_X) 0.8567 0.6665 4.0309 ( 0 35 66) 0 0.8567 0.6665 14 18 ( 4204 1ne2_A) ( 3865 1m6y_A) 0.8569 0.7499 3.2527 ( 0 37 66) 0 0.9269 0.8116 14 16 ( 4204 1ne2_A) ( 3944 1mjf_A) 0.8568 0.5000 3.7070 ( 0 37 66) 0 0.9264 0.5415 14 24 ( 4204 1ne2_A) ( 4204 1ne2_A) 1.0000 1.0000 0.0000 ( 0 65 91) 0 1.0000 1.0000 14 14 ( 4204 1ne2_A) ( 4296 1nkv_A) 0.8569 0.7058 3.5549 ( 0 38 66) 0 0.9242 0.7630 14 17 ( 4204 1ne2_A) ( 4384 1nt2_A) 0.8557 0.6663 4.0463 ( 1 33 66) 0 0.8557 0.6663 14 18 ( 4204 1ne2_A) ( 4401 1nv8_A) 0.8567 0.6315 3.9360 ( 0 36 66) 0 0.8567 0.6315 14 19 ( 4204 1ne2_A) ( 4412 1nw3_A) 0.8559 0.5713 5.1192 ( 0 43 66) 0 0.9205 0.6180 14 21 ( 4204 1ne2_A) ( 4413 1nw6_A) 0.4286 0.3158 3.7765 ( 0 7 15) 0 0.9274 0.6840 14 19 ( 4204 1ne2_A) ( 4492 1o54_A) 0.9282 0.6499 3.5481 ( 0 43 78) 0 0.9282 0.6499 14 20 ( 4204 1ne2_A) ( 4567 1o9g_A) 0.7856 0.7332 3.2114 ( 0 30 55) 0 0.8565 0.7995 14 15 ( 4204 1ne2_A) ( 4860 1p1c_A) 0.8568 0.7498 3.6457 ( 0 35 66) 0 0.8568 0.7498 14 16 ( 4204 1ne2_A) ( 4936 1p91_A) 0.7855 0.6111 3.4691 ( 0 31 55) 0 0.7855 0.6111 14 18 ( 4204 1ne2_A) ( 5033 1pjz_A) 0.8566 0.7497 4.2526 ( 0 29 66) 0 0.9215 0.8088 14 16 ( 4204 1ne2_A) ( 5169 1q0s_A) 0.8566 0.7057 4.2560 ( 0 34 66) 0 0.8566 0.7057 14 17 ( 4204 1ne2_A) ( 5266 1qam_A) 0.8567 0.7498 4.0195 ( 0 35 66) 0 0.8567 0.7498 14 16 ( 4204 1ne2_A) ( 5509 1qzz_A) 0.8566 0.6315 4.1180 ( 0 39 66) 0 0.8566 0.6315 14 19 ( 4204 1ne2_A) ( 5639 1ri5_A) 0.4285 0.3000 4.4697 ( 0 4 15) 0 0.9271 0.6497 14 20 ( 4204 1ne2_A) ( 5650 1rjd_A) 0.9274 0.5908 4.5961 ( 0 43 78) 0 0.9274 0.5908 14 22 ( 4204 1ne2_A) ( 6005 1ufk_A) 0.8569 0.5000 3.4171 ( 0 34 66) 0 0.9250 0.5414 14 24 ( 4204 1ne2_A) ( 6027 1uir_A) 0.8570 0.4800 3.1031 ( 0 36 66) 0 0.8570 0.4800 14 25 ( 4204 1ne2_A) ( 6132 1uwv_A) 0.8569 0.4444 3.3274 ( 0 34 66) 0 0.9274 0.4814 14 27 ( 4204 1ne2_A) ( 6164 1v39 ) 0.5713 0.4444 4.7681 ( 0 8 28) 0 0.9210 0.7200 14 18 ( 4204 1ne2_A) ( 6352 1xva_A) 0.8570 0.6315 3.1735 ( 0 36 66) 0 0.8570 0.6315 14 19 ( 4204 1ne2_A) ( 6430 2dpm_A) 0.8568 0.7057 3.8396 ( 0 35 66) 0 0.8568 0.7057 14 17 ( 4204 1ne2_A) ( 6629 6mht_A) 0.4286 0.3000 4.1657 ( 0 5 15) 0 0.7857 0.5500 14 20 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