------------------------------------------------------------------------------------------------------------------------- Top-ranked similarities (based on backbone shifts), as measured by a combination of score and contiguity. Some relevant parameters: HELIX min length: 5 STRAND min length: 3 shift-tolerance = -10 permissible-violations = 4 max-breaks = NIL retain-m = 100 best-n = 100 anglethresh = 0.5 septhresh = 5 min_length = 4 rmsd-tol = 9.9999999999999E12 Legend: ( ix1 chain1 ) ( ix2 chain2 ) rho___12 rho___21 L2_ERROR (Xbad Xsig Xtot) BRK maxrho12 maxrho21 SS1 SS2 ------------------------------------------------------------------------------------------------------------------------- ( 4936 1p91_A) ( 115 1af7 ) 0.6104 0.6461 6.8397 ( 0 31 55) 0 0.6653 0.7041 18 17 ( 4936 1p91_A) ( 439 1boo_A) 0.2778 0.2778 6.5585 ( 0 6 10) 0 0.6369 0.6369 18 18 ( 4936 1p91_A) ( 800 1dct_A) 0.3333 0.3000 5.6861 ( 0 3 15) 0 0.6825 0.6254 18 20 ( 4936 1p91_A) ( 869 1dl5_A) 0.5552 0.6243 4.2068 ( 1 25 45) 0 0.6107 0.6867 18 16 ( 4936 1p91_A) ( 943 1dus_A) 0.6108 0.7848 5.3639 ( 0 29 55) 0 0.6108 0.7848 18 14 ( 4936 1p91_A) ( 1179 1ej0_A) 0.5551 0.8297 6.9762 ( 0 18 45) 0 0.6092 0.9025 18 12 ( 4936 1p91_A) ( 1384 1f3l_A) 0.6105 0.4399 6.4929 ( 0 32 55) 0 0.6658 0.4798 18 25 ( 4936 1p91_A) ( 1596 1fp1_D) 0.6290 0.6685 7.8111 ( 6 47 78) 0 0.7156 0.8007 18 16 ( 4936 1p91_A) ( 1598 1fp2_A) 0.7202 0.6488 5.8135 ( 2 51 78) 0 0.7202 0.6488 18 20 ( 4936 1p91_A) ( 1708 1g38_A) 0.5554 0.3571 5.3631 ( 0 22 45) 0 0.5554 0.3802 18 28 ( 4936 1p91_A) ( 1727 1g55_A) 0.2778 0.2500 6.4267 ( 0 5 10) 0 0.6109 0.5499 18 20 ( 4936 1p91_A) ( 1737 1g60_A) 0.3325 0.4256 10.1736 ( 1 11 15) 0 0.6109 0.7851 18 14 ( 4936 1p91_A) ( 1761 1g8a_A) 0.6105 0.6105 5.8695 ( 1 31 55) 0 0.6646 0.6646 18 18 ( 4936 1p91_A) ( 2037 1h1d_A) 0.6662 0.7492 4.9981 ( 1 38 66) 0 0.6662 0.7492 18 16 ( 4936 1p91_A) ( 2249 1hnn_A) 0.6109 0.6109 4.9580 ( 0 35 55) 0 0.6661 0.6661 18 18 ( 4936 1p91_A) ( 2364 1i1n_A) 0.5555 0.6249 4.1136 ( 0 24 45) 0 0.6657 0.7482 18 16 ( 4936 1p91_A) ( 2390 1i4w_A) 0.6110 0.4999 4.7013 ( 0 31 55) 0 0.6110 0.4999 18 22 ( 4936 1p91_A) ( 2435 1i9g_A) 0.6109 0.4999 5.2358 ( 0 32 55) 0 0.6109 0.4999 18 22 ( 4936 1p91_A) ( 2533 1im8_A) 0.7145 0.7988 4.9519 ( 3 48 78) 0 0.7216 0.8113 18 16 ( 4936 1p91_A) ( 2545 1inl_A) 0.6110 0.4782 4.0549 ( 0 34 55) 0 0.6110 0.4782 18 23 ( 4936 1p91_A) ( 2649 1ixk_A) 0.6106 0.4582 6.3322 ( 0 30 55) 0 0.6635 0.4992 18 24 ( 4936 1p91_A) ( 2858 1jg1_A) 0.4444 0.5712 5.3873 ( 0 19 28) 0 0.6662 0.8555 18 14 ( 4936 1p91_A) ( 3018 1jqe_A) 0.7725 0.6344 5.4288 ( 3 60 91) 0 0.7725 0.6344 18 22 ( 4936 1p91_A) ( 3051 1jsx_A) 0.6660 0.7983 6.0827 ( 0 43 66) 0 0.6660 0.7983 18 15 ( 4936 1p91_A) ( 3391 1kpg_A) 0.6661 0.6311 5.5469 ( 1 39 66) 0 0.7132 0.6773 18 19 ( 4936 1p91_A) ( 3524 1l3i_A) 0.6110 0.7853 4.3195 ( 0 32 55) 0 0.6110 0.7853 18 14 ( 4936 1p91_A) ( 3577 1l9k_A) 0.3333 0.3333 6.1157 ( 0 8 15) 0 0.6280 0.6280 18 18 ( 4936 1p91_A) ( 3858 1m6e_X) 0.7040 0.7040 5.7332 ( 4 51 78) 0 0.7040 0.7040 18 18 ( 4936 1p91_A) ( 3865 1m6y_A) 0.6102 0.6859 7.2252 ( 0 29 55) 0 0.6105 0.6864 18 16 ( 4936 1p91_A) ( 3944 1mjf_A) 0.6109 0.4583 4.9683 ( 0 34 55) 0 0.6645 0.4995 18 24 ( 4936 1p91_A) ( 4204 1ne2_A) 0.3889 0.4999 5.2071 ( 0 10 21) 0 0.6106 0.7838 18 14 ( 4936 1p91_A) ( 4296 1nkv_A) 0.3333 0.3529 3.5071 ( 0 8 15) 0 0.5873 0.6069 18 17 ( 4936 1p91_A) ( 4384 1nt2_A) 0.6104 0.6104 5.9555 ( 1 29 55) 0 0.6648 0.6648 18 18 ( 4936 1p91_A) ( 4401 1nv8_A) 0.6108 0.5787 5.7148 ( 0 29 55) 0 0.6109 0.5788 18 19 ( 4936 1p91_A) ( 4412 1nw3_A) 0.5000 0.4286 3.7365 ( 0 16 36) 0 0.5951 0.5162 18 21 ( 4936 1p91_A) ( 4413 1nw6_A) 0.3333 0.3158 3.9116 ( 0 9 15) 0 0.6110 0.5788 18 19 ( 4936 1p91_A) ( 4492 1o54_A) 0.6109 0.5498 5.2893 ( 0 32 55) 0 0.6641 0.5985 18 20 ( 4936 1p91_A) ( 4567 1o9g_A) 0.6109 0.7328 5.1019 ( 0 30 55) 0 0.6109 0.7328 18 15 ( 4936 1p91_A) ( 4860 1p1c_A) 0.6110 0.6874 3.9786 ( 0 30 55) 0 0.6110 0.6874 18 16 ( 4936 1p91_A) ( 4936 1p91_A) 1.0000 1.0000 0.0000 ( 0 123 153) 0 1.0000 1.0000 18 18 ( 4936 1p91_A) ( 5033 1pjz_A) 0.4444 0.4999 4.8675 ( 0 11 28) 0 0.4444 0.4999 18 16 ( 4936 1p91_A) ( 5169 1q0s_A) 0.6106 0.6464 6.1557 ( 0 33 55) 0 0.6106 0.6464 18 17 ( 4936 1p91_A) ( 5266 1qam_A) 0.6107 0.6868 5.9619 ( 0 31 55) 0 0.6107 0.6868 18 16 ( 4936 1p91_A) ( 5509 1qzz_A) 0.3333 0.3158 4.6296 ( 0 8 15) 0 0.6682 0.6415 18 19 ( 4936 1p91_A) ( 5639 1ri5_A) 0.6634 0.5981 5.5929 ( 2 37 66) 0 0.6634 0.5981 18 20 ( 4936 1p91_A) ( 5650 1rjd_A) 0.6552 0.5411 5.5971 ( 3 39 66) 0 0.6552 0.5411 18 22 ( 4936 1p91_A) ( 6005 1ufk_A) 0.6662 0.4999 5.4910 ( 0 40 66) 0 0.6662 0.4999 18 24 ( 4936 1p91_A) ( 6027 1uir_A) 0.6110 0.4400 3.7681 ( 0 34 55) 0 0.6110 0.4400 18 25 ( 4936 1p91_A) ( 6132 1uwv_A) 0.6110 0.4074 4.6011 ( 0 31 55) 0 0.6675 0.4731 18 27 ( 4936 1p91_A) ( 6164 1v39 ) 0.5551 0.5551 6.7896 ( 0 20 45) 0 0.5551 0.5551 18 18 ( 4936 1p91_A) ( 6352 1xva_A) 0.7196 0.6822 5.9448 ( 2 46 78) 0 0.7196 0.6822 18 19 ( 4936 1p91_A) ( 6430 2dpm_A) 0.6108 0.6466 5.6778 ( 0 29 55) 0 0.6108 0.6466 18 17 ( 4936 1p91_A) ( 6629 6mht_A) 0.2778 0.2500 5.9599 ( 0 4 10) 0 0.6100 0.5493 18 20 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